RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 BRWD1Q9NSI6 2320 aa21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 GTPBP6O43824 516 aaPredicted RBP21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 PPP2R5BQ15173 497 aa21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 RNF207Q6ZRF8 634 aa21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 HERC6Q8IVU3 1022 aa21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 PHOSPHO2Q8TCD6 241 aa21.01■□□□□ 0.95
CLSTN3-214ENST00000542663 NKRFO15226 690 aaKnown RBP eCLIP21■□□□□ 0.95
CLSTN3-214ENST00000542663 TOP1P11387 765 aaKnown RBP21■□□□□ 0.95
CLSTN3-214ENST00000542663 MX1P20591 662 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 RPS6P62753 249 aaKnown RBP21■□□□□ 0.95
CLSTN3-214ENST00000542663 PTPN11Q06124 597 aaPredicted RBP21■□□□□ 0.95
CLSTN3-214ENST00000542663 PDE4DQ08499 809 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 SCFD2Q8WU76 684 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 ARNTL2Q8WYA1 636 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 CTAGE1Q96RT6 745 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 C1QTNF1Q9BXJ1 281 aa21■□□□□ 0.95
CLSTN3-214ENST00000542663 TLL1O43897 1013 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 LPXNO60711 386 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 ARIH2O95376 493 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 PDHBP11177 359 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 ALX1Q15699 326 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 DIEXFQ68CQ4 756 aaKnown RBP20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 RETREG2Q8NC44 543 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 FTOQ9C0B1 505 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 TCP11L1Q9NUJ3 509 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 PCDHB15Q9Y5E8 787 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 RAD50Q92878 1312 aa20.99■□□□□ 0.95
CLSTN3-214ENST00000542663 KPNA6O60684 536 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 GRB10Q13322 594 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 GPNMBQ14956 572 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 BRDTQ58F21 947 aaPredicted RBP20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 DNERQ8NFT8 737 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 FAM122AQ96E09 287 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 EPHX3Q9H6B9 360 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 TOMM22Q9NS69 142 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 COG5Q9UP83 839 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 MICAL3Q7RTP6 2002 aa20.98■□□□□ 0.95
CLSTN3-214ENST00000542663 BAIAP3O94812 1187 aa20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 TXNP10599 105 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 ZNF543Q08ER8 600 aa20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 BFSP2Q13515 415 aa20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 RRP12Q5JTH9 1297 aaKnown RBP20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 WDR19Q8NEZ3 1342 aa20.97■□□□□ 0.95
CLSTN3-214ENST00000542663 LCHNA4D1U4 455 aa20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 FGAP02671 866 aa20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 SNHG28P0DPA3 235 aa20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 CCDC62Q6P9F0 684 aa20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 TMCO2Q7Z6W1 182 aaPredicted RBP20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 NLRC5Q86WI3 1866 aa20.96■□□□□ 0.95
CLSTN3-214ENST00000542663 KIF28PB7ZC32 967 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 RBAK-RBAKDNI3L0D1 243 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 WDR5P61964 334 aaKnown RBP20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 PTGISQ16647 500 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 GDF6Q6KF10 455 aaPredicted RBP20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 HLA-CQ95604 372 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 MPHOSPH6Q99547 160 aaKnown RBP20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 LRFN3Q9BTN0 628 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 HELLSQ9NRZ9 838 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 PNMA2Q9UL42 364 aa20.95■□□□□ 0.94
CLSTN3-214ENST00000542663 A0A0D9SFI3 127 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 CHMP4BP1P59074 171 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 SESTD1Q86VW0 696 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 AFAP1L1Q8TED9 768 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 AFG1LQ8WV93 481 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 DHX38Q92620 1227 aaKnown RBP20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 KAT2BQ92831 832 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 KHSRPQ92945 711 aaKnown RBP eCLIP20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 FAM227BQ96M60 508 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 NOD1Q9Y239 953 aa20.94■□□□□ 0.94
CLSTN3-214ENST00000542663 MMP3P08254 477 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 DEFB103AP81534 67 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 ARHGAP1Q07960 439 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 TCTN1Q2MV58 587 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 USH1GQ495M9 461 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 CAGE1Q8TC20 777 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 TBC1D5Q92609 795 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 EVI5LQ96CN4 794 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 CPVLQ9H3G5 476 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 ATG2AQ2TAZ0 1938 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 ZMYM6O95789 1325 aa20.93■□□□□ 0.94
CLSTN3-214ENST00000542663 HSPD1P10809 573 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 KCNJ6P48051 423 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 HAND2P61296 217 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 LY6KQ17RY6 165 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 RGS22Q8NE09 1264 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 TTC14Q96N46 770 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 COL20A1Q9P218 1284 aa20.92■□□□□ 0.94
CLSTN3-214ENST00000542663 NBNO60934 754 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 CXCL10P02778 98 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 GOLGA8HP0CJ92 632 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 SELPP16109 830 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 HOXD11P31277 338 aaPredicted RBP20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 RBL2Q08999 1139 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 LRRC8DQ7L1W4 858 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 ZNF589Q86UQ0 364 aaPredicted RBP20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 CCDC155Q8N6L0 562 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 GDPD5Q8WTR4 605 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 TAAR1Q96RJ0 339 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 DOCK5Q9H7D0 1870 aa20.91■□□□□ 0.94
CLSTN3-214ENST00000542663 C11orf16Q9NQ32 467 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms