RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SPDYE3A6NKU9 549 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 MEIS2O14770 477 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 SEPT4O43236 478 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 AP3B2Q13367 1082 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 STXBP2Q15833 593 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 TBC1D5Q92609 795 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 PXMP2Q9NR77 195 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 KIF3AQ9Y496 699 aa21.55■■□□□ 1.04
VPS33A-205ENST00000541169 SNAI1O95863 264 aaPredicted RBP21.54■■□□□ 1.04
VPS33A-205ENST00000541169 AKR1A1P14550 325 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 HOXA13P31271 388 aaPredicted RBP21.54■■□□□ 1.04
VPS33A-205ENST00000541169 ACVR2BQ13705 512 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 NECAB1Q8N987 351 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 TAAR1Q96RJ0 339 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 UNC93B1Q9H1C4 597 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 ORC3Q9UBD5 711 aaPredicted RBP21.54■■□□□ 1.04
VPS33A-205ENST00000541169 FAM184BQ9ULE4 1060 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 LCTP09848 1927 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 FRMPD4Q14CM0 1322 aa21.54■■□□□ 1.04
VPS33A-205ENST00000541169 EIF3JO75822 258 aaKnown RBP21.53■■□□□ 1.04
VPS33A-205ENST00000541169 LARGE1O95461 756 aa21.53■■□□□ 1.04
VPS33A-205ENST00000541169 KCNV1Q6PIU1 500 aa21.53■■□□□ 1.04
VPS33A-205ENST00000541169 FCHSD1Q86WN1 690 aa21.53■■□□□ 1.04
VPS33A-205ENST00000541169 NSUN7Q8NE18 718 aaKnown RBP21.53■■□□□ 1.04
VPS33A-205ENST00000541169 ASTN1O14525 1302 aa21.53■■□□□ 1.04
VPS33A-205ENST00000541169 CCDC85CA6NKD9 419 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 CTDNEP1O95476 244 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 NR3C2P08235 984 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 ZNF865P0CJ78 1059 aaPredicted RBP21.52■■□□□ 1.04
VPS33A-205ENST00000541169 CNGA1P29973 690 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 GJA8P48165 433 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 TRIM32Q13049 653 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 MTFR1Q15390 333 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 IQSEC1Q6DN90 963 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 USP17L6PQ6QN14 398 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 TMX3Q96JJ7 454 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 PDCD2LQ9BRP1 358 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 COL20A1Q9P218 1284 aa21.52■■□□□ 1.04
VPS33A-205ENST00000541169 DDX20Q9UHI6 824 aaKnown RBP21.52■■□□□ 1.04
VPS33A-205ENST00000541169 SGPL1O95470 568 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 CCND2P30279 289 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 NLRP5P59047 1200 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 TRIM29Q14134 588 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 TYW1BQ6NUM6 668 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 VSIG10LQ86VR7 867 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 CCDC83Q8IWF9 413 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 REXO1Q8N1G1 1221 aaKnown RBP21.51■■□□□ 1.03
VPS33A-205ENST00000541169 ZHX1Q9UKY1 873 aaPredicted RBP21.51■■□□□ 1.03
VPS33A-205ENST00000541169 HTTP42858 3142 aa21.51■■□□□ 1.03
VPS33A-205ENST00000541169 NKRFO15226 690 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS33A-205ENST00000541169 RARBP10826 455 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 EIF2AK2P19525 551 aaKnown RBP21.5■■□□□ 1.03
VPS33A-205ENST00000541169 CCND3P30281 292 aaPredicted RBP21.5■■□□□ 1.03
VPS33A-205ENST00000541169 PGM5Q15124 567 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 PCNX4Q63HM2 1172 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 ANKLE1Q8NAG6 615 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 DAGLBQ8NCG7 672 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 SCFD2Q8WU76 684 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 SNX21Q969T3 373 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 PURBQ96QR8 312 aaKnown RBP21.5■■□□□ 1.03
VPS33A-205ENST00000541169 CRISPLD2Q9H0B8 497 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 VPS54Q9P1Q0 977 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 Q9Y3F1 56 aa21.5■■□□□ 1.03
VPS33A-205ENST00000541169 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.5■■□□□ 1.03
VPS33A-205ENST00000541169 CLK2P49760 499 aaKnown RBP21.49■■□□□ 1.03
VPS33A-205ENST00000541169 CCDC144BQ3MJ40 725 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 GNPTABQ3T906 1256 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 TRPV1Q8NER1 839 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 U2AF1L4Q8WU68 220 aaKnown RBP21.49■■□□□ 1.03
VPS33A-205ENST00000541169 DEFB118Q96PH6 123 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 ALG1Q9BT22 464 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 KATNBL1Q9H079 304 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 BRMS1Q9HCU9 246 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 PCDHA6Q9UN73 950 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 PCDHA4Q9UN74 947 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 PCDHA8Q9Y5H6 950 aa21.49■■□□□ 1.03
VPS33A-205ENST00000541169 MCM3APO60318 1980 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 RBM47A0AV96 593 aaKnown RBP21.48■■□□□ 1.03
VPS33A-205ENST00000541169 DUSP11O75319 330 aaKnown RBP21.48■■□□□ 1.03
VPS33A-205ENST00000541169 TGFB3P10600 412 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 PRAMEF19Q5SWL8 479 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 FAM184AQ8NB25 1140 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 ARRDC4Q8NCT1 418 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 PHF20Q9BVI0 1012 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 SPC25Q9HBM1 224 aa21.48■■□□□ 1.03
VPS33A-205ENST00000541169 MAFGO15525 162 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 TFRCP02786 760 aaKnown RBP21.47■■□□□ 1.03
VPS33A-205ENST00000541169 FDPSP14324 419 aaKnown RBP21.47■■□□□ 1.03
VPS33A-205ENST00000541169 TNFAIP2Q03169 654 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 TTLL4Q14679 1199 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 LHX8Q68G74 356 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 CDHR1Q96JP9 859 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 OGDHLQ9ULD0 1010 aa21.47■■□□□ 1.03
VPS33A-205ENST00000541169 LRRC37A2A6NM11 1700 aa21.46■■□□□ 1.03
VPS33A-205ENST00000541169 PPFIA3O75145 1194 aa21.46■■□□□ 1.03
VPS33A-205ENST00000541169 MYCP01106 439 aaPredicted RBP21.46■■□□□ 1.03
VPS33A-205ENST00000541169 ST3GAL1Q11201 340 aa21.46■■□□□ 1.03
VPS33A-205ENST00000541169 UBE2SQ16763 222 aa21.46■■□□□ 1.03
VPS33A-205ENST00000541169 TAPT1Q6NXT6 567 aa21.46■■□□□ 1.03
VPS33A-205ENST00000541169 NLRX1Q86UT6 975 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms