RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CCDC87Q9NVE4 849 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 CACNA1SQ13698 1873 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 TLR10Q9BXR5 811 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 UBA5Q9GZZ9 404 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 TUBB4BP68371 445 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 CACNB1Q02641 598 aaPredicted RBP23.31■■□□□ 1.32
CTCF-202ENST00000401394 FGFBP2Q9BYJ0 223 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 STXBP3O00186 592 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 BACH1O14867 736 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 KCNB1Q14721 858 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 CCDC181Q5TID7 509 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 TANGO6Q9C0B7 1094 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 POTEMA6NI47 508 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 MYMKA6NI61 221 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 KCNK18Q7Z418 384 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 NDST4Q9H3R1 872 aa23.3■■□□□ 1.32
CTCF-202ENST00000401394 SEC24CP53992 1094 aa23.29■■□□□ 1.32
CTCF-202ENST00000401394 PACSIN1Q9BY11 444 aa23.29■■□□□ 1.32
CTCF-202ENST00000401394 SIK3Q9Y2K2 1263 aa23.29■■□□□ 1.32
CTCF-202ENST00000401394 MAGEA1P43355 309 aa23.29■■□□□ 1.32
CTCF-202ENST00000401394 TDRD12Q587J7 1177 aaKnown RBP23.29■■□□□ 1.32
CTCF-202ENST00000401394 SH3RF3Q8TEJ3 882 aaPredicted RBP23.29■■□□□ 1.32
CTCF-202ENST00000401394 PPM1EQ8WY54 764 aa23.29■■□□□ 1.32
CTCF-202ENST00000401394 SHOX2O60902 331 aaPredicted RBP23.28■■□□□ 1.32
CTCF-202ENST00000401394 TUBBP07437 444 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 IBSPP21815 317 aaPredicted RBP23.28■■□□□ 1.32
CTCF-202ENST00000401394 SF3A3Q12874 501 aaKnown RBP eCLIP23.28■■□□□ 1.32
CTCF-202ENST00000401394 CCDC43Q96MW1 224 aaKnown RBP23.28■■□□□ 1.32
CTCF-202ENST00000401394 CRNKL1Q9BZJ0 848 aaKnown RBP23.28■■□□□ 1.32
CTCF-202ENST00000401394 EFCC1Q9HA90 598 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 MKNK2Q9HBH9 465 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 ORC4O43929 436 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 TACC1O75410 805 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 ADAMTS2O95450 1211 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 GUCY2DQ02846 1103 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 PLAGL2Q9UPG8 496 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 LRP5O75197 1615 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 KCNQ2O43526 872 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 CALML3P27482 149 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 NAPAP54920 295 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 DHTKD1Q96HY7 919 aaPredicted RBP23.28■■□□□ 1.32
CTCF-202ENST00000401394 EPB41L5Q9HCM4 733 aa23.28■■□□□ 1.32
CTCF-202ENST00000401394 MYO1FO00160 1098 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 KLHDC7AQ5VTJ3 777 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 CCDC170Q8IYT3 715 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 EHBP1Q8NDI1 1231 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 CENPHQ9H3R5 247 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 EIF3HO15372 352 aaKnown RBP eCLIP23.27■■□□□ 1.32
CTCF-202ENST00000401394 KIF5BP33176 963 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 VWA3BQ502W6 1294 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 CLEC10AQ8IUN9 316 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 MAPKAPK5Q8IW41 473 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 OR2W6PQ8NHA6 318 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 TGFBRAP1Q8WUH2 860 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 CCSER1Q9C0I3 900 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 TCP11L1Q9NUJ3 509 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 STIM2Q9P246 746 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 PLCH1Q4KWH8 1693 aa23.27■■□□□ 1.32
CTCF-202ENST00000401394 CHADLQ6NUI6 762 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 MMGT1Q8N4V1 131 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 TRIM58Q8NG06 486 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 TBCKQ8TEA7 893 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 RNPC3Q96LT9 517 aaKnown RBP23.26■■□□□ 1.31
CTCF-202ENST00000401394 TMEM47Q9BQJ4 181 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 ANO9A1A5B4 782 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 ZNF233A6NK53 670 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 EBAG9O00559 213 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 OR52Z1P0C646 297 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 C8orf74Q6P047 294 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 ITGB4P16144 1822 aa23.26■■□□□ 1.31
CTCF-202ENST00000401394 SMCO2A6NFE2 343 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 KLRF2D3W0D1 207 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 KCNV1Q6PIU1 500 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 BLOC1S4Q9NUP1 217 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 LOC102724428A0A0B4J2F2 783 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 SLC37A4O43826 429 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 TLR2O60603 784 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 ERLIN2O94905 339 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 TDP2O95551 362 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 TSPY3P0CV98 308 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 TSPY8P0CW00 308 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 SIK1P57059 783 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 PPFIA1Q13136 1202 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 NNTQ13423 1086 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 ECM1Q16610 540 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 BAP1Q92560 729 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 ERGIC2Q96RQ1 377 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 KRT12Q99456 494 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 NHSL1Q5SYE7 1610 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 USO1O60763 962 aaKnown RBP23.25■■□□□ 1.31
CTCF-202ENST00000401394 KCNMA1Q12791 1236 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 TMED8Q6PL24 325 aaPredicted RBP23.25■■□□□ 1.31
CTCF-202ENST00000401394 DDX42Q86XP3 938 aaKnown RBP eCLIP23.25■■□□□ 1.31
CTCF-202ENST00000401394 ZSCAN29Q8IWY8 852 aaPredicted RBP23.25■■□□□ 1.31
CTCF-202ENST00000401394 KLHL7Q8IXQ5 586 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 BARHL2Q9NY43 387 aa23.25■■□□□ 1.31
CTCF-202ENST00000401394 PALMO75781 387 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 EIF6P56537 245 aaKnown RBP23.24■■□□□ 1.31
CTCF-202ENST00000401394 GRB10Q13322 594 aa23.24■■□□□ 1.31
CTCF-202ENST00000401394 NELFCDQ8IXH7 590 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms