RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C YPR109WQ06104 294 aa5.48□□□□□ -1.53
RPC40YPR110C GYP1Q08484 637 aa5.48□□□□□ -1.53
RPC40YPR110C KTR1P27810 393 aaKnown RBP5.47□□□□□ -1.53
RPC40YPR110C SIT4P20604 311 aa5.46□□□□□ -1.54
RPC40YPR110C BRL1P38770 471 aa5.46□□□□□ -1.54
RPC40YPR110C HST2P53686 357 aa5.46□□□□□ -1.54
RPC40YPR110C NIS1P53939 407 aa5.45□□□□□ -1.54
RPC40YPR110C PEX21P50091 288 aa5.44□□□□□ -1.54
RPC40YPR110C FPK1P53739 893 aa5.44□□□□□ -1.54
RPC40YPR110C YRR1Q12172 810 aa5.44□□□□□ -1.54
RPC40YPR110C AMS1P22855 1083 aa5.43□□□□□ -1.54
RPC40YPR110C PKC1P24583 1151 aa5.43□□□□□ -1.54
RPC40YPR110C GLN1P32288 370 aaKnown RBP5.43□□□□□ -1.54
RPC40YPR110C STR2P47164 639 aa5.43□□□□□ -1.54
RPC40YPR110C BUD20Q08004 166 aaPredicted RBP5.42□□□□□ -1.54
RPC40YPR110C TUM1Q08686 304 aaKnown RBP5.42□□□□□ -1.54
RPC40YPR110C TYW1Q08960 810 aaKnown RBP5.42□□□□□ -1.54
RPC40YPR110C ISM1P48526 1002 aa5.41□□□□□ -1.54
RPC40YPR110C MMP1Q12372 583 aa5.41□□□□□ -1.54
RPC40YPR110C YMR196WQ04336 1088 aa5.4□□□□□ -1.54
RPC40YPR110C RTF1P53064 558 aa5.38□□□□□ -1.55
RPC40YPR110C SCJ1P25303 377 aa5.37□□□□□ -1.55
RPC40YPR110C NUD1P32336 851 aa5.37□□□□□ -1.55
RPC40YPR110C CSE4P36012 229 aa5.37□□□□□ -1.55
RPC40YPR110C ESS1P22696 170 aa5.36□□□□□ -1.55
RPC40YPR110C BIM1P40013 344 aa5.36□□□□□ -1.55
RPC40YPR110C YNL115CP53925 644 aa5.36□□□□□ -1.55
RPC40YPR110C SAS4Q04003 481 aa5.36□□□□□ -1.55
RPC40YPR110C RAD59Q12223 238 aa5.36□□□□□ -1.55
RPC40YPR110C TY1A-DR4O74302 440 aa5.35□□□□□ -1.55
RPC40YPR110C PRT1P06103 763 aaKnown RBP5.35□□□□□ -1.55
RPC40YPR110C TY1A-HP0C2I4 478 aaKnown RBP5.35□□□□□ -1.55
RPC40YPR110C TY1A-AP0CX57 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-PR1P0CX58 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-ORP0CX59 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-PR2P0CX60 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-DR5P0CX65 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-ER2P0CX66 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-GR3P0CX67 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-LR1P0CX68 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-MR2P0CX69 440 aa5.35□□□□□ -1.55
RPC40YPR110C TRK1P12685 1235 aa5.35□□□□□ -1.55
RPC40YPR110C YBL036CP38197 257 aa5.35□□□□□ -1.55
RPC40YPR110C RSC30P38781 883 aa5.35□□□□□ -1.55
RPC40YPR110C YJL007CP47080 104 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-JR2P47099 440 aa5.35□□□□□ -1.55
RPC40YPR110C PKH3Q03306 898 aaPredicted RBP5.35□□□□□ -1.55
RPC40YPR110C TY1A-DR1Q03856 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-ML1Q04706 440 aaKnown RBP5.35□□□□□ -1.55
RPC40YPR110C TY1A-BRQ12217 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-NL2Q12470 440 aa5.35□□□□□ -1.55
RPC40YPR110C TY1A-GR2Q12485 440 aa5.35□□□□□ -1.55
RPC40YPR110C YJU3P28321 313 aa5.34□□□□□ -1.55
RPC40YPR110C CLA4P48562 842 aa5.34□□□□□ -1.55
RPC40YPR110C SEC2P17065 759 aa5.33□□□□□ -1.56
RPC40YPR110C ATG32P40458 529 aa5.33□□□□□ -1.56
RPC40YPR110C CST6P40535 587 aa5.33□□□□□ -1.56
RPC40YPR110C BUB1P41695 1021 aaKnown RBP RIP-Chip data5.33□□□□□ -1.56not detected
RPC40YPR110C LAM6Q08001 693 aa5.33□□□□□ -1.56
RPC40YPR110C YEL077CQ3E7X8 1277 aa5.33□□□□□ -1.56
RPC40YPR110C SLY41P22215 453 aa5.32□□□□□ -1.56
RPC40YPR110C AIR1P40507 360 aaKnown RBP5.32□□□□□ -1.56
RPC40YPR110C ARG8P18544 423 aa5.31□□□□□ -1.56
RPC40YPR110C KEX2P13134 814 aa5.3□□□□□ -1.56
RPC40YPR110C SPT5P27692 1063 aaKnown RBP5.3□□□□□ -1.56
RPC40YPR110C BIO2P32451 375 aa5.3□□□□□ -1.56
RPC40YPR110C PUS6P53294 404 aa5.3□□□□□ -1.56
RPC40YPR110C ERF2Q06551 359 aa5.3□□□□□ -1.56
RPC40YPR110C TIF1P10081 395 aaKnown RBP5.29□□□□□ -1.56
RPC40YPR110C MAK16P10962 306 aaPredicted RBP5.29□□□□□ -1.56
RPC40YPR110C SUP45P12385 437 aaKnown RBP5.29□□□□□ -1.56
RPC40YPR110C GCD11P32481 527 aaKnown RBP5.29□□□□□ -1.56
RPC40YPR110C NPL4P33755 580 aa5.29□□□□□ -1.56
RPC40YPR110C RGA1P39083 1007 aa5.29□□□□□ -1.56
RPC40YPR110C TRM1P15565 570 aaKnown RBP5.28□□□□□ -1.56
RPC40YPR110C MRF1P30775 413 aaPredicted RBP5.28□□□□□ -1.56
RPC40YPR110C RPL34BP40525 121 aaKnown RBP5.28□□□□□ -1.56
RPC40YPR110C RGA2Q06407 1009 aa5.28□□□□□ -1.56
RPC40YPR110C ERG12P07277 443 aa5.26□□□□□ -1.57
RPC40YPR110C NAF1P53919 492 aaKnown RBP5.26□□□□□ -1.57
RPC40YPR110C RRN7P40992 514 aa5.25□□□□□ -1.57
RPC40YPR110C YNL108CP53929 270 aa5.25□□□□□ -1.57
RPC40YPR110C FRK1Q03002 865 aaPredicted RBP5.25□□□□□ -1.57
RPC40YPR110C AGE1Q04412 482 aa5.25□□□□□ -1.57
RPC40YPR110C SUB2Q07478 446 aaKnown RBP5.25□□□□□ -1.57
RPC40YPR110C RTG2P32608 588 aaKnown RBP5.24□□□□□ -1.57
RPC40YPR110C TTI1P36097 1038 aa5.24□□□□□ -1.57
RPC40YPR110C SSA4P22202 642 aaKnown RBP5.23□□□□□ -1.57
RPC40YPR110C YDJ1P25491 409 aaKnown RBP5.23□□□□□ -1.57
RPC40YPR110C SPT16P32558 1035 aaKnown RBP5.23□□□□□ -1.57
RPC40YPR110C TUB4P53378 473 aa5.23□□□□□ -1.57
RPC40YPR110C MRX10Q05648 414 aa5.23□□□□□ -1.57
RPC40YPR110C YPR204WQ08995 1032 aa5.23□□□□□ -1.57
RPC40YPR110C ENO2P00925 437 aaKnown RBP5.22□□□□□ -1.57
RPC40YPR110C RPA14P50106 137 aa5.22□□□□□ -1.57
RPC40YPR110C TBF1Q02457 562 aa5.22□□□□□ -1.57
RPC40YPR110C SIS2P36024 562 aa5.21□□□□□ -1.58
RPC40YPR110C BDP1P46678 594 aa5.21□□□□□ -1.58
RPC40YPR110C YPP1P46951 817 aa5.21□□□□□ -1.58
RPC40YPR110C RIM21P48565 533 aa5.21□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms