RNA–Protein interactions for RNA: YPL234C

VMA11, Transcript of Vacuolar ATPase V0 domain subunit c', yeast

Gene VMA11, Length 495 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA11	YPL234C	FKH1	P40466	484 aa		11.08	□□□□□ -0.64
VMA11	YPL234C	RPP0	P05317	312 aa	Known RBP	11.07	□□□□□ -0.64
VMA11	YPL234C	CFT1	Q06632	1357 aa	Known RBP	11.06	□□□□□ -0.64
VMA11	YPL234C	MRX12	P47084	519 aa		11.06	□□□□□ -0.64
VMA11	YPL234C	TY1B-NL2	Q99337	1749 aa	Known RBP	11.05	□□□□□ -0.64
VMA11	YPL234C	CDC45	Q08032	650 aa		11.04	□□□□□ -0.64
VMA11	YPL234C	KRE5	P22023	1365 aa		11.03	□□□□□ -0.64
VMA11	YPL234C	VPS27	P40343	622 aa	Known RBP	11.03	□□□□□ -0.64
VMA11	YPL234C	IOC4	Q04213	475 aa		11.01	□□□□□ -0.65
VMA11	YPL234C	YML133C	Q03099	1374 aa		11.01	□□□□□ -0.65
VMA11	YPL234C	YLL067C	Q07888	1374 aa		11.01	□□□□□ -0.65
VMA11	YPL234C	YLL066C	Q99208	1374 aa		11.01	□□□□□ -0.65
VMA11	YPL234C	PSK1	P31374	1356 aa		11	□□□□□ -0.65
VMA11	YPL234C	TRK1	P12685	1235 aa		10.98	□□□□□ -0.65
VMA11	YPL234C	TFA1	P36100	482 aa		10.98	□□□□□ -0.65
VMA11	YPL234C	RIA1	P53893	1110 aa		10.98	□□□□□ -0.65
VMA11	YPL234C	YDL144C	Q07589	356 aa		10.98	□□□□□ -0.65
VMA11	YPL234C	YEF3	P16521	1044 aa	Known RBP	10.97	□□□□□ -0.65
VMA11	YPL234C	RCM1	P53972	490 aa		10.95	□□□□□ -0.66
VMA11	YPL234C	RVB2	Q12464	471 aa	Known RBP	10.94	□□□□□ -0.66
VMA11	YPL234C	FUN12	P39730	1002 aa	Known RBP	10.93	□□□□□ -0.66
VMA11	YPL234C	THI12	P42883	340 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	THI5	P43534	340 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	THI11	P47183	340 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	THI13	Q07748	340 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	TY4B-H	P0C2J7	1802 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	TY4B-J	P47024	1803 aa		10.93	□□□□□ -0.66
VMA11	YPL234C	YRB30	P53107	440 aa	Predicted RBP	10.92	□□□□□ -0.66
VMA11	YPL234C	KAR2	P16474	682 aa	Known RBP	10.91	□□□□□ -0.66
VMA11	YPL234C	PPH3	P32345	308 aa		10.9	□□□□□ -0.66
VMA11	YPL234C	PDI1	P17967	522 aa	Known RBP	10.89	□□□□□ -0.67
VMA11	YPL234C	FPR3	P38911	411 aa	Known RBP	10.89	□□□□□ -0.67
VMA11	YPL234C	MPP10	P47083	593 aa	Known RBP	10.89	□□□□□ -0.67
VMA11	YPL234C	SUI2	P20459	304 aa	Known RBP	10.88	□□□□□ -0.67
VMA11	YPL234C	RTR1	P40084	226 aa	Predicted RBP	10.88	□□□□□ -0.67
VMA11	YPL234C	TAP42	Q04372	366 aa		10.87	□□□□□ -0.67
VMA11	YPL234C	RTF1	P53064	558 aa		10.86	□□□□□ -0.67
VMA11	YPL234C	YMR196W	Q04336	1088 aa		10.86	□□□□□ -0.67
VMA11	YPL234C	APC1	P53886	1748 aa		10.85	□□□□□ -0.67
VMA11	YPL234C	LEU2	P04173	364 aa	Predicted RBP	10.85	□□□□□ -0.67
VMA11	YPL234C	YNR029C	P53729	429 aa	Known RBP	10.85	□□□□□ -0.67
VMA11	YPL234C	CPS1	P27614	576 aa		10.84	□□□□□ -0.67
VMA11	YPL234C	MTR4	P47047	1073 aa	Known RBP	10.84	□□□□□ -0.67
VMA11	YPL234C	GRX4	P32642	244 aa		10.83	□□□□□ -0.68
VMA11	YPL234C	RRP46	P53256	223 aa	Predicted RBP	10.83	□□□□□ -0.68
VMA11	YPL234C	PAP2	P53632	584 aa	Known RBP	10.83	□□□□□ -0.68
VMA11	YPL234C	YIL177C	P40434	1758 aa		10.82	□□□□□ -0.68
VMA11	YPL234C	YJL225C	P40889	1758 aa		10.82	□□□□□ -0.68
VMA11	YPL234C	AUS1	Q08409	1394 aa		10.82	□□□□□ -0.68
VMA11	YPL234C	RRP5	Q05022	1729 aa	Known RBP	10.81	□□□□□ -0.68
VMA11	YPL234C	FKS3	Q04952	1785 aa		10.81	□□□□□ -0.68
VMA11	YPL234C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	10.8	□□□□□ -0.68	not detected
VMA11	YPL234C	HIM1	Q06674	414 aa		10.8	□□□□□ -0.68
VMA11	YPL234C	SAP155	P43612	1002 aa		10.79	□□□□□ -0.68
VMA11	YPL234C	YRF1-2	P40105	1681 aa		10.79	□□□□□ -0.68
VMA11	YPL234C	RPC31	P17890	251 aa		10.78	□□□□□ -0.68
VMA11	YPL234C	RAD2	P07276	1031 aa		10.77	□□□□□ -0.69
VMA11	YPL234C	PRD1	P25375	712 aa		10.77	□□□□□ -0.69
VMA11	YPL234C	TPD3	P31383	635 aa		10.77	□□□□□ -0.69
VMA11	YPL234C	URB1	P34241	1764 aa	Known RBP	10.77	□□□□□ -0.69
VMA11	YPL234C	RPO41	P13433	1351 aa	Known RBP	10.76	□□□□□ -0.69
VMA11	YPL234C	ADE6	P38972	1358 aa	Known RBP	10.76	□□□□□ -0.69
VMA11	YPL234C	CSE4	P36012	229 aa		10.75	□□□□□ -0.69
VMA11	YPL234C	THI22	Q06490	572 aa		10.75	□□□□□ -0.69
VMA11	YPL234C	SIR4	P11978	1358 aa		10.75	□□□□□ -0.69
VMA11	YPL234C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	10.74	□□□□□ -0.69	not detected
VMA11	YPL234C	RPS24A	P0CX31	135 aa	Known RBP	10.73	□□□□□ -0.69
VMA11	YPL234C	RPS24B	P0CX32	135 aa	Known RBP	10.73	□□□□□ -0.69
VMA11	YPL234C	PRP43	P53131	767 aa	Known RBP	10.72	□□□□□ -0.69
VMA11	YPL234C	GAS4	Q08271	471 aa		10.72	□□□□□ -0.69
VMA11	YPL234C	HEF3	P53978	1044 aa	Known RBP	10.71	□□□□□ -0.69
VMA11	YPL234C	DPS1	P04802	557 aa	Known RBP	10.7	□□□□□ -0.7
VMA11	YPL234C	YRF1-4	O13559	1382 aa		10.69	□□□□□ -0.7
VMA11	YPL234C	DAL5	P15365	543 aa		10.69	□□□□□ -0.7
VMA11	YPL234C	RTT109	Q07794	436 aa		10.69	□□□□□ -0.7
VMA11	YPL234C	MAK21	Q12176	1025 aa	Known RBP	10.69	□□□□□ -0.7
VMA11	YPL234C	YIL092W	P40497	633 aa		10.68	□□□□□ -0.7
VMA11	YPL234C	APP1	P53933	587 aa		10.67	□□□□□ -0.7
VMA11	YPL234C	AKL1	P38080	1108 aa	Known RBP	10.65	□□□□□ -0.7
VMA11	YPL234C	GLN1	P32288	370 aa	Known RBP	10.64	□□□□□ -0.71
VMA11	YPL234C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	10.64	□□□□□ -0.71	not detected
VMA11	YPL234C	YAH1	Q12184	172 aa	Known RBP	10.63	□□□□□ -0.71
VMA11	YPL234C	POL32	P47110	350 aa		10.62	□□□□□ -0.71
VMA11	YPL234C	GYP7	P48365	746 aa		10.59	□□□□□ -0.71
VMA11	YPL234C	DSD1	P53095	428 aa		10.59	□□□□□ -0.71
VMA11	YPL234C	YNL050C	P53952	270 aa		10.59	□□□□□ -0.71
VMA11	YPL234C	YFR016C	P43597	1233 aa	Known RBP	10.58	□□□□□ -0.72
VMA11	YPL234C	PUF6	Q04373	656 aa	Known RBP	10.58	□□□□□ -0.72
VMA11	YPL234C	IME2	P32581	645 aa		10.57	□□□□□ -0.72
VMA11	YPL234C	OPY1	P38271	328 aa		10.57	□□□□□ -0.72
VMA11	YPL234C	MAM1	P40065	302 aa		10.57	□□□□□ -0.72
VMA11	YPL234C	YIL055C	P40523	627 aa	Known RBP	10.57	□□□□□ -0.72
VMA11	YPL234C	RRT14	P40470	206 aa		10.56	□□□□□ -0.72
VMA11	YPL234C	YIR014W	P40570	242 aa		10.56	□□□□□ -0.72
VMA11	YPL234C	ZDS1	P50111	915 aa	Known RBP	10.56	□□□□□ -0.72
VMA11	YPL234C	EAF7	P53911	425 aa	Known RBP	10.56	□□□□□ -0.72
VMA11	YPL234C	EDE1	P34216	1381 aa		10.55	□□□□□ -0.72
VMA11	YPL234C	NTH2	P35172	780 aa		10.55	□□□□□ -0.72
VMA11	YPL234C	PTP3	P40048	928 aa		10.54	□□□□□ -0.72
VMA11	YPL234C	TRP5	P00931	707 aa	Known RBP	10.53	□□□□□ -0.72

Retrieved 100 of 5,963 RNA–protein pairs in 35.3 ms