RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeastyeast

Gene PRE6, Length 765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE6YOL038W YMR074CQ04773 145 aa15.14■□□□□ 0.01
PRE6YOL038W CPS1P27614 576 aa15.13■□□□□ 0.01
PRE6YOL038W TAF5P38129 798 aa15.12■□□□□ 0.01
PRE6YOL038W URB1P34241 1764 aaKnown RBP15.11■□□□□ 0.01
PRE6YOL038W PPH3P32345 308 aa15.11■□□□□ 0.01
PRE6YOL038W IMH1Q06704 911 aaKnown RBP15.1■□□□□ 0.01
PRE6YOL038W FKS3Q04952 1785 aa15.08■□□□□ 0
PRE6YOL038W PRP45P28004 379 aaPredicted RBP15.06■□□□□ 0
PRE6YOL038W YIL177CP40434 1758 aa15.06■□□□□ 0
PRE6YOL038W YJL225CP40889 1758 aa15.06■□□□□ 0
PRE6YOL038W ESL2P36168 1195 aa15.04■□□□□ -0
PRE6YOL038W YRF1-3P0CX14 1859 aa15.01□□□□□ -0.01
PRE6YOL038W YRF1-7P0CX15 1859 aa15.01□□□□□ -0.01
PRE6YOL038W YRF1-6P53819 1859 aa15.01□□□□□ -0.01
PRE6YOL038W ADE6P38972 1358 aaKnown RBP15□□□□□ -0.01
PRE6YOL038W BUD31P25337 157 aaPredicted RBP14.99□□□□□ -0.01
PRE6YOL038W NAP1P25293 417 aaKnown RBP14.98□□□□□ -0.01
PRE6YOL038W PRI1P10363 409 aa14.96□□□□□ -0.01
PRE6YOL038W PRP5P21372 849 aaPredicted RBP14.96□□□□□ -0.01
PRE6YOL038W PSK1P31374 1356 aa14.95□□□□□ -0.02
PRE6YOL038W MSB3P48566 633 aaPredicted RBP14.94□□□□□ -0.02
PRE6YOL038W SPE2P21182 396 aa14.91□□□□□ -0.02
PRE6YOL038W KIP3P53086 805 aaKnown RBP14.87□□□□□ -0.03
PRE6YOL038W DOT5P40553 215 aa14.84□□□□□ -0.03
PRE6YOL038W YLR419WQ06698 1435 aaKnown RBP14.83□□□□□ -0.03
PRE6YOL038W APC1P53886 1748 aa14.83□□□□□ -0.03
PRE6YOL038W RPN11P43588 306 aaKnown RBP14.82□□□□□ -0.04
PRE6YOL038W IES2P40154 320 aa14.81□□□□□ -0.04
PRE6YOL038W YML133CQ03099 1374 aa14.81□□□□□ -0.04
PRE6YOL038W YLL067CQ07888 1374 aa14.81□□□□□ -0.04
PRE6YOL038W YLL066CQ99208 1374 aa14.81□□□□□ -0.04
PRE6YOL038W RSF2P46974 1380 aa14.8□□□□□ -0.04
PRE6YOL038W FOX2Q02207 900 aaKnown RBP14.78□□□□□ -0.04
PRE6YOL038W LEU3P08638 886 aa14.77□□□□□ -0.05
PRE6YOL038W PRP43P53131 767 aaKnown RBP14.77□□□□□ -0.05
PRE6YOL038W SLM3Q12093 417 aa14.76□□□□□ -0.05
PRE6YOL038W RPS24AP0CX31 135 aaKnown RBP14.75□□□□□ -0.05
PRE6YOL038W RPS24BP0CX32 135 aaKnown RBP14.75□□□□□ -0.05
PRE6YOL038W ORC1P54784 914 aaPredicted RBP14.75□□□□□ -0.05
PRE6YOL038W TCB1Q12466 1186 aa14.74□□□□□ -0.05
PRE6YOL038W CSE4P36012 229 aa14.73□□□□□ -0.05
PRE6YOL038W NPR2P39923 615 aa14.73□□□□□ -0.05
PRE6YOL038W CHZ1P40019 153 aaPredicted RBP14.73□□□□□ -0.05
PRE6YOL038W MLP1Q02455 1875 aaKnown RBP14.73□□□□□ -0.05
PRE6YOL038W ROM2P51862 1356 aaKnown RBP14.72□□□□□ -0.05
PRE6YOL038W LEU2P04173 364 aaPredicted RBP14.71□□□□□ -0.05
PRE6YOL038W MTR4P47047 1073 aaKnown RBP14.69□□□□□ -0.06
PRE6YOL038W LYS4P49367 693 aaPredicted RBP14.69□□□□□ -0.06
PRE6YOL038W UBP1P25037 809 aa14.68□□□□□ -0.06
PRE6YOL038W YBL086CP38177 466 aa14.68□□□□□ -0.06
PRE6YOL038W SNF2P22082 1703 aa14.66□□□□□ -0.06
PRE6YOL038W XKS1P42826 600 aa14.64□□□□□ -0.07
PRE6YOL038W RIM15P43565 1770 aa14.63□□□□□ -0.07
PRE6YOL038W COBP00163 385 aa14.61□□□□□ -0.07
PRE6YOL038W YKL133CP36066 463 aa14.61□□□□□ -0.07
PRE6YOL038W YKR075CP36155 307 aa14.61□□□□□ -0.07
PRE6YOL038W CTH1P47976 325 aa14.61□□□□□ -0.07
PRE6YOL038W EDE1P34216 1381 aa14.6□□□□□ -0.07
PRE6YOL038W YRF1-4O13559 1382 aa14.59□□□□□ -0.07
PRE6YOL038W YEF3P16521 1044 aaKnown RBP14.54□□□□□ -0.08
PRE6YOL038W SSA2P10592 639 aaKnown RBP14.53□□□□□ -0.08
PRE6YOL038W FKH1P40466 484 aa14.52□□□□□ -0.09
PRE6YOL038W GTT3P39996 337 aa14.51□□□□□ -0.09
PRE6YOL038W YJL181WP46987 611 aa14.51□□□□□ -0.09
PRE6YOL038W LAM6Q08001 693 aa14.51□□□□□ -0.09
PRE6YOL038W AUS1Q08409 1394 aa14.5□□□□□ -0.09
PRE6YOL038W DPS1P04802 557 aaKnown RBP14.5□□□□□ -0.09
PRE6YOL038W ENP1P38333 483 aaKnown RBP14.5□□□□□ -0.09
PRE6YOL038W GAS4Q08271 471 aa14.5□□□□□ -0.09
PRE6YOL038W UGA2P38067 497 aa14.49□□□□□ -0.09
PRE6YOL038W FRK1Q03002 865 aaPredicted RBP14.49□□□□□ -0.09
PRE6YOL038W PRP40P33203 583 aaKnown RBP14.48□□□□□ -0.09
PRE6YOL038W RCR1P38212 213 aa14.47□□□□□ -0.09
PRE6YOL038W ALD2P47771 506 aa14.47□□□□□ -0.09
PRE6YOL038W ADE16P54113 591 aaKnown RBP14.47□□□□□ -0.09
PRE6YOL038W SIR4P11978 1358 aa14.47□□□□□ -0.09
PRE6YOL038W RTG3P38165 486 aa14.45□□□□□ -0.1
PRE6YOL038W RPO41P13433 1351 aaKnown RBP14.41□□□□□ -0.1
PRE6YOL038W PDI1P17967 522 aaKnown RBP14.39□□□□□ -0.11
PRE6YOL038W HIM1Q06674 414 aa14.38□□□□□ -0.11
PRE6YOL038W SSA1P10591 642 aaKnown RBP14.36□□□□□ -0.11
PRE6YOL038W RTF1P53064 558 aa14.35□□□□□ -0.11
PRE6YOL038W MEC3Q02574 474 aa14.34□□□□□ -0.11
PRE6YOL038W SEC3P33332 1336 aaKnown RBP14.34□□□□□ -0.11
PRE6YOL038W TAP42Q04372 366 aa14.33□□□□□ -0.12
PRE6YOL038W INP54Q08227 384 aaKnown RBP14.3□□□□□ -0.12
PRE6YOL038W BDF1P35817 686 aa14.29□□□□□ -0.12
PRE6YOL038W RPG1P38249 964 aaKnown RBP14.29□□□□□ -0.12
PRE6YOL038W MSB4Q12317 492 aa14.28□□□□□ -0.12
PRE6YOL038W GRX4P32642 244 aa14.27□□□□□ -0.13
PRE6YOL038W SCT1P32784 759 aa14.26□□□□□ -0.13
PRE6YOL038W OSM1P21375 501 aaKnown RBP14.25□□□□□ -0.13
PRE6YOL038W ATG13Q06628 738 aa14.25□□□□□ -0.13
PRE6YOL038W SPT7P35177 1332 aa14.24□□□□□ -0.13
PRE6YOL038W MHP1P43638 1398 aa14.23□□□□□ -0.13
PRE6YOL038W GRE2Q12068 342 aaKnown RBP14.23□□□□□ -0.13
PRE6YOL038W ALD3P54114 506 aa14.22□□□□□ -0.13
PRE6YOL038W PDS5Q04264 1277 aa14.22□□□□□ -0.13
PRE6YOL038W BUB1P41695 1021 aaKnown RBP RIP-Chip data14.21□□□□□ -0.13not detected
PRE6YOL038W EAF6P47128 113 aa14.21□□□□□ -0.13
Retrieved 100 of 5,963 RNA–protein pairs in 37.8 ms