RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C FKH1P40466 484 aa11.02□□□□□ -0.65
RPD3YNL330C MLP1Q02455 1875 aaKnown RBP11.01□□□□□ -0.65
RPD3YNL330C RAD9P14737 1309 aa11□□□□□ -0.65
RPD3YNL330C CFT1Q06632 1357 aaKnown RBP10.99□□□□□ -0.65
RPD3YNL330C YRB30P53107 440 aaPredicted RBP10.97□□□□□ -0.65
RPD3YNL330C RVB2Q12464 471 aaKnown RBP10.97□□□□□ -0.65
RPD3YNL330C ITT1Q04638 464 aa10.96□□□□□ -0.65
RPD3YNL330C YDL144CQ07589 356 aa10.96□□□□□ -0.65
RPD3YNL330C FPR3P38911 411 aaKnown RBP10.95□□□□□ -0.66
RPD3YNL330C CAB1Q04430 367 aa10.95□□□□□ -0.66
RPD3YNL330C FUN12P39730 1002 aaKnown RBP10.93□□□□□ -0.66
RPD3YNL330C HAP1P0CE41 1502 aa10.92□□□□□ -0.66
RPD3YNL330C TRK1P12685 1235 aa10.91□□□□□ -0.66
RPD3YNL330C YEF3P16521 1044 aaKnown RBP10.91□□□□□ -0.66
RPD3YNL330C BNI1P41832 1953 aa10.89□□□□□ -0.67
RPD3YNL330C RPC31P17890 251 aa10.88□□□□□ -0.67
RPD3YNL330C SUI2P20459 304 aaKnown RBP10.86□□□□□ -0.67
RPD3YNL330C MRX12P47084 519 aa10.86□□□□□ -0.67
RPD3YNL330C SNF2P22082 1703 aa10.85□□□□□ -0.67
RPD3YNL330C YML133CQ03099 1374 aa10.85□□□□□ -0.67
RPD3YNL330C YLL067CQ07888 1374 aa10.85□□□□□ -0.67
RPD3YNL330C YLL066CQ99208 1374 aa10.85□□□□□ -0.67
RPD3YNL330C MPP10P47083 593 aaKnown RBP10.84□□□□□ -0.67
RPD3YNL330C RTR1P40084 226 aaPredicted RBP10.84□□□□□ -0.67
RPD3YNL330C NAB6Q03735 1134 aaKnown RBP RIP-Chip data10.84□□□□□ -0.67not detected
RPD3YNL330C PSK1P31374 1356 aa10.82□□□□□ -0.68
RPD3YNL330C KAR2P16474 682 aaKnown RBP10.81□□□□□ -0.68
RPD3YNL330C TAP42Q04372 366 aa10.81□□□□□ -0.68
RPD3YNL330C KRE5P22023 1365 aa10.79□□□□□ -0.68
RPD3YNL330C RCM1P53972 490 aa10.79□□□□□ -0.68
RPD3YNL330C TSR3Q12094 313 aaKnown RBP10.79□□□□□ -0.68
RPD3YNL330C RAD2P07276 1031 aa10.78□□□□□ -0.68
RPD3YNL330C PDI1P17967 522 aaKnown RBP10.78□□□□□ -0.68
RPD3YNL330C RRP46P53256 223 aaPredicted RBP10.78□□□□□ -0.68
RPD3YNL330C SAP155P43612 1002 aa10.77□□□□□ -0.69
RPD3YNL330C LEU2P04173 364 aaPredicted RBP10.76□□□□□ -0.69
RPD3YNL330C RIA1P53893 1110 aa10.76□□□□□ -0.69
RPD3YNL330C RTF1P53064 558 aa10.75□□□□□ -0.69
RPD3YNL330C ABP1P15891 592 aaKnown RBP10.74□□□□□ -0.69
RPD3YNL330C PRD1P25375 712 aa10.74□□□□□ -0.69
RPD3YNL330C PPH3P32345 308 aa10.74□□□□□ -0.69
RPD3YNL330C IME2P32581 645 aa10.74□□□□□ -0.69
RPD3YNL330C GRX4P32642 244 aa10.74□□□□□ -0.69
RPD3YNL330C BUD27P43573 796 aaKnown RBP RIP-Chip data10.74□□□□□ -0.69not detected
RPD3YNL330C PAP2P53632 584 aaKnown RBP10.74□□□□□ -0.69
RPD3YNL330C RPL17AP05740 184 aaKnown RBP10.72□□□□□ -0.69
RPD3YNL330C REB1P21538 810 aa10.72□□□□□ -0.69
RPD3YNL330C TPD3P31383 635 aa10.72□□□□□ -0.69
RPD3YNL330C RPL17BP46990 184 aaKnown RBP10.72□□□□□ -0.69
RPD3YNL330C MTR4P47047 1073 aaKnown RBP10.72□□□□□ -0.69
RPD3YNL330C OPY1P38271 328 aa10.71□□□□□ -0.69
RPD3YNL330C THI22Q06490 572 aa10.71□□□□□ -0.69
RPD3YNL330C DNF3Q12674 1656 aa10.7□□□□□ -0.7
RPD3YNL330C YIR014WP40570 242 aa10.7□□□□□ -0.7
RPD3YNL330C HIM1Q06674 414 aa10.7□□□□□ -0.7
RPD3YNL330C CPS1P27614 576 aa10.69□□□□□ -0.7
RPD3YNL330C YFR016CP43597 1233 aaKnown RBP10.69□□□□□ -0.7
RPD3YNL330C YIL092WP40497 633 aa10.68□□□□□ -0.7
RPD3YNL330C EAF7P53911 425 aaKnown RBP10.68□□□□□ -0.7
RPD3YNL330C HEF3P53978 1044 aaKnown RBP10.68□□□□□ -0.7
RPD3YNL330C SIR4P11978 1358 aa10.67□□□□□ -0.7
RPD3YNL330C MAK21Q12176 1025 aaKnown RBP10.67□□□□□ -0.7
RPD3YNL330C AUS1Q08409 1394 aa10.66□□□□□ -0.7
RPD3YNL330C DAL5P15365 543 aa10.66□□□□□ -0.7
RPD3YNL330C MAK10Q02197 733 aa10.65□□□□□ -0.7
RPD3YNL330C HAA1Q12753 694 aaKnown RBP10.65□□□□□ -0.7
RPD3YNL330C YNR029CP53729 429 aaKnown RBP10.64□□□□□ -0.71
RPD3YNL330C YRF1-4O13559 1382 aa10.64□□□□□ -0.71
RPD3YNL330C RPO41P13433 1351 aaKnown RBP10.64□□□□□ -0.71
RPD3YNL330C CLC1P17891 233 aa10.63□□□□□ -0.71
RPD3YNL330C POL32P47110 350 aa10.63□□□□□ -0.71
RPD3YNL330C RTT109Q07794 436 aa10.63□□□□□ -0.71
RPD3YNL330C CSE4P36012 229 aa10.62□□□□□ -0.71
RPD3YNL330C PRP43P53131 767 aaKnown RBP10.61□□□□□ -0.71
RPD3YNL330C USO1P25386 1790 aa10.61□□□□□ -0.71
RPD3YNL330C RPS24AP0CX31 135 aaKnown RBP10.58□□□□□ -0.72
RPD3YNL330C RPS24BP0CX32 135 aaKnown RBP10.58□□□□□ -0.72
RPD3YNL330C PUF6Q04373 656 aaKnown RBP10.58□□□□□ -0.72
RPD3YNL330C GAS4Q08271 471 aa10.58□□□□□ -0.72
RPD3YNL330C YPR148CQ06523 435 aa10.57□□□□□ -0.72
RPD3YNL330C ADE6P38972 1358 aaKnown RBP10.56□□□□□ -0.72
RPD3YNL330C DPS1P04802 557 aaKnown RBP10.56□□□□□ -0.72
RPD3YNL330C AKL1P38080 1108 aaKnown RBP10.56□□□□□ -0.72
RPD3YNL330C BUB1P41695 1021 aaKnown RBP RIP-Chip data10.54□□□□□ -0.72not detected
RPD3YNL330C GYP7P48365 746 aa10.54□□□□□ -0.72
RPD3YNL330C TY1B-NL2Q99337 1749 aaKnown RBP10.53□□□□□ -0.72
RPD3YNL330C SNF7P39929 240 aaKnown RBP10.53□□□□□ -0.72
RPD3YNL330C YNL050CP53952 270 aa10.53□□□□□ -0.72
RPD3YNL330C ECM16Q04217 1267 aaKnown RBP10.53□□□□□ -0.72
RPD3YNL330C APC1P53886 1748 aa10.52□□□□□ -0.73
RPD3YNL330C MAM1P40065 302 aa10.52□□□□□ -0.73
RPD3YNL330C PCT1P13259 424 aa10.51□□□□□ -0.73
RPD3YNL330C ZDS1P50111 915 aaKnown RBP10.51□□□□□ -0.73
RPD3YNL330C DSD1P53095 428 aa10.51□□□□□ -0.73
RPD3YNL330C MRPL32P25348 183 aa10.5□□□□□ -0.73
RPD3YNL330C TRP5P00931 707 aaKnown RBP10.49□□□□□ -0.73
RPD3YNL330C RRT14P40470 206 aa10.49□□□□□ -0.73
RPD3YNL330C ROX1P25042 368 aa10.47□□□□□ -0.73
RPD3YNL330C NTH2P35172 780 aa10.47□□□□□ -0.73
RPD3YNL330C VPS24P36095 224 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms