RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W TIF11P38912 153 aaKnown RBP9.26□□□□□ -0.93
CAF40YNL288W IFH1P39520 1085 aa9.26□□□□□ -0.93
CAF40YNL288W YOL036WQ08206 761 aa9.26□□□□□ -0.93
CAF40YNL288W MSB4Q12317 492 aa9.26□□□□□ -0.93
CAF40YNL288W TRM3Q07527 1436 aa9.25□□□□□ -0.93
CAF40YNL288W BUD3P25558 1636 aa9.25□□□□□ -0.93
CAF40YNL288W MIF2P35201 549 aa9.25□□□□□ -0.93
CAF40YNL288W SAM3Q08986 587 aa9.25□□□□□ -0.93
CAF40YNL288W SET4P42948 560 aa9.24□□□□□ -0.93
CAF40YNL288W TY3B-GQ99315 1547 aa9.24□□□□□ -0.93
CAF40YNL288W YBT1P32386 1661 aa9.23□□□□□ -0.93
CAF40YNL288W DOP1Q03921 1698 aa9.22□□□□□ -0.93
CAF40YNL288W COQ8P27697 501 aa9.2□□□□□ -0.94
CAF40YNL288W EAP1P36041 632 aaKnown RBP9.2□□□□□ -0.94
CAF40YNL288W ULI1P43604 169 aa9.2□□□□□ -0.94
CAF40YNL288W GYP5Q12344 894 aa9.17□□□□□ -0.94
CAF40YNL288W ARO1P08566 1588 aaKnown RBP9.16□□□□□ -0.94
CAF40YNL288W EDS1P38073 919 aa9.16□□□□□ -0.94
CAF40YNL288W DNF2Q12675 1612 aa9.16□□□□□ -0.94
CAF40YNL288W ABP1P15891 592 aaKnown RBP9.13□□□□□ -0.95
CAF40YNL288W PTC3P34221 468 aaKnown RBP9.13□□□□□ -0.95
CAF40YNL288W CHC1P22137 1653 aaKnown RBP9.13□□□□□ -0.95
CAF40YNL288W GRE2Q12068 342 aaKnown RBP9.12□□□□□ -0.95
CAF40YNL288W IOC2Q12072 812 aa9.12□□□□□ -0.95
CAF40YNL288W TRP5P00931 707 aaKnown RBP9.11□□□□□ -0.95
CAF40YNL288W LDB19Q12502 818 aa9.11□□□□□ -0.95
CAF40YNL288W DCW1P36091 449 aa9.1□□□□□ -0.95
CAF40YNL288W YSP2Q06681 1438 aa9.09□□□□□ -0.95
CAF40YNL288W SET1P38827 1080 aaKnown RBP9.09□□□□□ -0.95
CAF40YNL288W ATH1P48016 1211 aa9.09□□□□□ -0.95
CAF40YNL288W NOP53Q12080 455 aaKnown RBP9.09□□□□□ -0.95
CAF40YNL288W HTA1P04911 132 aaKnown RBP9.08□□□□□ -0.96
CAF40YNL288W HTA2P04912 132 aa9.08□□□□□ -0.96
CAF40YNL288W SRB8P25648 1427 aa9.06□□□□□ -0.96
CAF40YNL288W DMA1P38823 416 aa9.06□□□□□ -0.96
CAF40YNL288W GUT1P32190 709 aa9.05□□□□□ -0.96
CAF40YNL288W CKB1P43639 278 aa9.05□□□□□ -0.96
CAF40YNL288W IKI3Q06706 1349 aaKnown RBP9.05□□□□□ -0.96
CAF40YNL288W BNR1P40450 1375 aa9.03□□□□□ -0.96
CAF40YNL288W RTG1P32607 177 aa9.02□□□□□ -0.97
CAF40YNL288W FKH1P40466 484 aa9.02□□□□□ -0.97
CAF40YNL288W SEC7P11075 2009 aaKnown RBP9.02□□□□□ -0.97
CAF40YNL288W YNL035CP53962 389 aaKnown RBP9.01□□□□□ -0.97
CAF40YNL288W JIP4Q03361 876 aa8.99□□□□□ -0.97
CAF40YNL288W YOR093CQ12275 1648 aa8.98□□□□□ -0.97
CAF40YNL288W YEL023CP39992 682 aa8.98□□□□□ -0.97
CAF40YNL288W AIR2Q12476 344 aaKnown RBP8.98□□□□□ -0.97
CAF40YNL288W PTC4P38089 393 aa8.96□□□□□ -0.98
CAF40YNL288W SEC61P32915 480 aa8.95□□□□□ -0.98
CAF40YNL288W YJL171CP46992 396 aa8.95□□□□□ -0.98
CAF40YNL288W NCR1Q12200 1170 aa8.95□□□□□ -0.98
CAF40YNL288W TFG1P41895 735 aaPredicted RBP8.93□□□□□ -0.98
CAF40YNL288W DAN4P47179 1161 aa8.92□□□□□ -0.98
CAF40YNL288W BUD21Q08492 214 aaPredicted RBP8.92□□□□□ -0.98
CAF40YNL288W DNF3Q12674 1656 aa8.91□□□□□ -0.98
CAF40YNL288W SSM4P40318 1319 aa8.89□□□□□ -0.99
CAF40YNL288W SOL3P38858 249 aa8.88□□□□□ -0.99
CAF40YNL288W URN1Q06525 465 aaKnown RBP8.88□□□□□ -0.99
CAF40YNL288W YGR273CP53329 174 aa8.87□□□□□ -0.99
CAF40YNL288W BMT6Q12291 365 aa8.87□□□□□ -0.99
CAF40YNL288W NUP188P52593 1655 aaKnown RBP8.86□□□□□ -0.99
CAF40YNL288W YAP3P38749 330 aa8.86□□□□□ -0.99
CAF40YNL288W NST1P53935 1240 aa8.86□□□□□ -0.99
CAF40YNL288W YPR148CQ06523 435 aa8.84□□□□□ -0.99
CAF40YNL288W AI4P03878 556 aa8.83□□□□□ -1
CAF40YNL288W MPH3P0CE00 602 aa8.83□□□□□ -1
CAF40YNL288W GCN2P15442 1659 aa8.83□□□□□ -1
CAF40YNL288W HAP1P0CE41 1502 aa8.83□□□□□ -1
CAF40YNL288W VMR1P38735 1592 aa8.82□□□□□ -1
CAF40YNL288W VPS70P47161 811 aa8.82□□□□□ -1
CAF40YNL288W PDR5P33302 1511 aaKnown RBP8.81□□□□□ -1
CAF40YNL288W YDL129WQ07555 291 aa8.81□□□□□ -1
CAF40YNL288W IML1P47170 1584 aa8.8□□□□□ -1
CAF40YNL288W PML39Q03760 334 aa8.79□□□□□ -1
CAF40YNL288W SAP30P38429 201 aa8.78□□□□□ -1
CAF40YNL288W IPL1P38991 367 aa8.76□□□□□ -1.01
CAF40YNL288W ILV3P39522 585 aaKnown RBP8.76□□□□□ -1.01
CAF40YNL288W VHR2P40041 505 aa8.75□□□□□ -1.01
CAF40YNL288W KEX1P09620 729 aa8.74□□□□□ -1.01
CAF40YNL288W MAK10Q02197 733 aa8.73□□□□□ -1.01
CAF40YNL288W YLR326WQ06170 240 aaKnown RBP8.73□□□□□ -1.01
CAF40YNL288W UBP14P38237 781 aaKnown RBP8.72□□□□□ -1.01
CAF40YNL288W REF2P42073 533 aaPredicted RBP8.72□□□□□ -1.01
CAF40YNL288W MID1P41821 548 aa8.71□□□□□ -1.02
CAF40YNL288W TYS1P36421 394 aaKnown RBP8.69□□□□□ -1.02
CAF40YNL288W PEX29Q03370 554 aa8.69□□□□□ -1.02
CAF40YNL288W RAD54P32863 898 aa8.68□□□□□ -1.02
CAF40YNL288W SLI15P38283 698 aa8.67□□□□□ -1.02
CAF40YNL288W PDR11P40550 1411 aa8.67□□□□□ -1.02
CAF40YNL288W KIC1P38692 1080 aa8.66□□□□□ -1.02
CAF40YNL288W TY1B-NL2Q99337 1749 aaKnown RBP8.66□□□□□ -1.02
CAF40YNL288W RAV1P47104 1357 aa8.65□□□□□ -1.02
CAF40YNL288W PAF1P38351 445 aa8.65□□□□□ -1.02
CAF40YNL288W PCS60P38137 543 aaKnown RBP RIP-Chip data8.64□□□□□ -1.03not detected
CAF40YNL288W PRE3P38624 215 aa8.62□□□□□ -1.03
CAF40YNL288W ELP4Q02884 456 aaKnown RBP8.62□□□□□ -1.03
CAF40YNL288W YDR090CQ03193 310 aa8.62□□□□□ -1.03
CAF40YNL288W CHL1P22516 861 aaPredicted RBP8.61□□□□□ -1.03
CAF40YNL288W MAK21Q12176 1025 aaKnown RBP8.61□□□□□ -1.03
CAF40YNL288W USO1P25386 1790 aa8.61□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms