RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C ESS1P22696 170 aa7.07□□□□□ -1.28
EAR1YMR171C SAP30P38429 201 aa7.06□□□□□ -1.28
EAR1YMR171C YDR344CQ05510 147 aa7.06□□□□□ -1.28
EAR1YMR171C HAP5Q02516 242 aa7.05□□□□□ -1.28
EAR1YMR171C PKH3Q03306 898 aaPredicted RBP7.05□□□□□ -1.28
EAR1YMR171C AIR2Q12476 344 aaKnown RBP7.05□□□□□ -1.28
EAR1YMR171C PDR1P12383 1068 aa7.03□□□□□ -1.28
EAR1YMR171C YJU3P28321 313 aa7.03□□□□□ -1.28
EAR1YMR171C NUD1P32336 851 aa7.03□□□□□ -1.28
EAR1YMR171C ARH1P48360 493 aa7.03□□□□□ -1.28
EAR1YMR171C RAD59Q12223 238 aa7.03□□□□□ -1.28
EAR1YMR171C YJL007CP47080 104 aa7.02□□□□□ -1.29
EAR1YMR171C SLY41P22215 453 aa7.01□□□□□ -1.29
EAR1YMR171C BIM1P40013 344 aa7.01□□□□□ -1.29
EAR1YMR171C RTF1P53064 558 aa7.01□□□□□ -1.29
EAR1YMR171C YNL115CP53925 644 aa7.01□□□□□ -1.29
EAR1YMR171C TY1B-DR4Q07793 1604 aa7.01□□□□□ -1.29
EAR1YMR171C KEX2P13134 814 aa7□□□□□ -1.29
EAR1YMR171C YBL036CP38197 257 aa7□□□□□ -1.29
EAR1YMR171C ERF2Q06551 359 aa7□□□□□ -1.29
EAR1YMR171C ARG8P18544 423 aa6.98□□□□□ -1.29
EAR1YMR171C ATG32P40458 529 aa6.98□□□□□ -1.29
EAR1YMR171C STR2P47164 639 aa6.98□□□□□ -1.29
EAR1YMR171C ISM1P48526 1002 aa6.98□□□□□ -1.29
EAR1YMR171C NPL4P33755 580 aa6.97□□□□□ -1.29
EAR1YMR171C RSC30P38781 883 aa6.97□□□□□ -1.29
EAR1YMR171C BNI4P53858 892 aa6.97□□□□□ -1.29
EAR1YMR171C ELP4Q02884 456 aaKnown RBP6.97□□□□□ -1.29
EAR1YMR171C BIO2P32451 375 aa6.96□□□□□ -1.29
EAR1YMR171C RAM1P22007 431 aa6.96□□□□□ -1.3
EAR1YMR171C CSE4P36012 229 aa6.95□□□□□ -1.3
EAR1YMR171C SPT23P35210 1082 aa6.94□□□□□ -1.3
EAR1YMR171C LAM6Q08001 693 aa6.94□□□□□ -1.3
EAR1YMR171C TRM1P15565 570 aaKnown RBP6.93□□□□□ -1.3
EAR1YMR171C SIS1P25294 352 aaKnown RBP6.93□□□□□ -1.3
EAR1YMR171C BMT6Q12291 365 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-DR4O74302 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-HP0C2I4 478 aaKnown RBP6.93□□□□□ -1.3
EAR1YMR171C TY1A-AP0CX57 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-PR1P0CX58 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-ORP0CX59 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-PR2P0CX60 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-DR5P0CX65 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-ER2P0CX66 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-GR3P0CX67 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-LR1P0CX68 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-MR2P0CX69 440 aa6.93□□□□□ -1.3
EAR1YMR171C TIF1P10081 395 aaKnown RBP6.93□□□□□ -1.3
EAR1YMR171C TY1A-JR2P47099 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-DR1Q03856 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-ML1Q04706 440 aaKnown RBP6.93□□□□□ -1.3
EAR1YMR171C TY1A-BRQ12217 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-NL2Q12470 440 aa6.93□□□□□ -1.3
EAR1YMR171C TY1A-GR2Q12485 440 aa6.93□□□□□ -1.3
EAR1YMR171C GCD11P32481 527 aaKnown RBP6.92□□□□□ -1.3
EAR1YMR171C PTC2P39966 464 aaKnown RBP6.92□□□□□ -1.3
EAR1YMR171C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.92□□□□□ -1.3not detected
EAR1YMR171C PUS6P53294 404 aa6.92□□□□□ -1.3
EAR1YMR171C ERG12P07277 443 aa6.91□□□□□ -1.3
EAR1YMR171C SEC2P17065 759 aa6.91□□□□□ -1.3
EAR1YMR171C RPL34BP40525 121 aaKnown RBP6.91□□□□□ -1.3
EAR1YMR171C YNL108CP53929 270 aa6.91□□□□□ -1.3
EAR1YMR171C BUD20Q08004 166 aaPredicted RBP6.91□□□□□ -1.3
EAR1YMR171C YPR015CQ12531 247 aa6.91□□□□□ -1.3
EAR1YMR171C HSL1P34244 1518 aa6.91□□□□□ -1.3
EAR1YMR171C PRE3P38624 215 aa6.9□□□□□ -1.3
EAR1YMR171C YJL171CP46992 396 aa6.9□□□□□ -1.3
EAR1YMR171C MAK16P10962 306 aaPredicted RBP6.9□□□□□ -1.31
EAR1YMR171C AGE1Q04412 482 aa6.9□□□□□ -1.31
EAR1YMR171C TUB4P53378 473 aa6.89□□□□□ -1.31
EAR1YMR171C TBF1Q02457 562 aa6.88□□□□□ -1.31
EAR1YMR171C SPT6P23615 1451 aaKnown RBP6.88□□□□□ -1.31
EAR1YMR171C SUP45P12385 437 aaKnown RBP6.87□□□□□ -1.31
EAR1YMR171C YML082WQ04533 649 aaKnown RBP6.87□□□□□ -1.31
EAR1YMR171C YDJ1P25491 409 aaKnown RBP6.87□□□□□ -1.31
EAR1YMR171C RTG2P32608 588 aaKnown RBP6.87□□□□□ -1.31
EAR1YMR171C CHL1P22516 861 aaPredicted RBP6.86□□□□□ -1.31
EAR1YMR171C SPT5P27692 1063 aaKnown RBP6.86□□□□□ -1.31
EAR1YMR171C YPR204WQ08995 1032 aa6.86□□□□□ -1.31
EAR1YMR171C YDL206WQ12424 762 aa6.86□□□□□ -1.31
EAR1YMR171C PRT1P06103 763 aaKnown RBP6.85□□□□□ -1.31
EAR1YMR171C ENO2P00925 437 aaKnown RBP6.84□□□□□ -1.32
EAR1YMR171C PAC1P39946 494 aaKnown RBP6.84□□□□□ -1.32
EAR1YMR171C RRN7P40992 514 aa6.82□□□□□ -1.32
EAR1YMR171C RPA14P50106 137 aa6.81□□□□□ -1.32
EAR1YMR171C NAF1P53919 492 aaKnown RBP6.81□□□□□ -1.32
EAR1YMR171C SUB2Q07478 446 aaKnown RBP6.81□□□□□ -1.32
EAR1YMR171C ENO1P00924 437 aaKnown RBP6.8□□□□□ -1.32
EAR1YMR171C TTI1P36097 1038 aa6.8□□□□□ -1.32
EAR1YMR171C RIM21P48565 533 aa6.8□□□□□ -1.32
EAR1YMR171C HIR3P47171 1648 aa6.79□□□□□ -1.32
EAR1YMR171C CPS1P27614 576 aa6.79□□□□□ -1.32
EAR1YMR171C MRX10Q05648 414 aa6.79□□□□□ -1.32
EAR1YMR171C YPR097WQ06839 1073 aa6.79□□□□□ -1.32
EAR1YMR171C PDC1P06169 563 aaKnown RBP6.78□□□□□ -1.32
EAR1YMR171C SSA4P22202 642 aaKnown RBP6.78□□□□□ -1.32
EAR1YMR171C PAT1P25644 796 aaKnown RBP6.78□□□□□ -1.32
EAR1YMR171C ALR1Q08269 859 aa6.78□□□□□ -1.32
EAR1YMR171C XRN1P22147 1528 aaKnown RBP6.77□□□□□ -1.33
EAR1YMR171C SPT16P32558 1035 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms