RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C ORC1P54784 914 aaPredicted RBP14.44□□□□□ -0.1
SPT8YLR055C KIP3P53086 805 aaKnown RBP14.43□□□□□ -0.1
SPT8YLR055C TY3B-IQ7LHG5 1498 aaKnown RBP14.43□□□□□ -0.1
SPT8YLR055C SPE2P21182 396 aa14.38□□□□□ -0.11
SPT8YLR055C RCM1P53972 490 aa14.35□□□□□ -0.11
SPT8YLR055C CPS1P27614 576 aa14.3□□□□□ -0.12
SPT8YLR055C PPH3P32345 308 aa14.28□□□□□ -0.12
SPT8YLR055C TFA1P36100 482 aa14.28□□□□□ -0.12
SPT8YLR055C CHZ1P40019 153 aaPredicted RBP14.25□□□□□ -0.13
SPT8YLR055C PTP3P40048 928 aa14.25□□□□□ -0.13
SPT8YLR055C PDS5Q04264 1277 aa14.25□□□□□ -0.13
SPT8YLR055C SCT1P32784 759 aa14.24□□□□□ -0.13
SPT8YLR055C PSK1P31374 1356 aa14.22□□□□□ -0.13
SPT8YLR055C TY4B-HP0C2J7 1802 aa14.18□□□□□ -0.14
SPT8YLR055C TY4B-JP47024 1803 aa14.18□□□□□ -0.14
SPT8YLR055C NST1P53935 1240 aa14.15□□□□□ -0.14
SPT8YLR055C MLP1Q02455 1875 aaKnown RBP14.15□□□□□ -0.14
SPT8YLR055C YAH1Q12184 172 aaKnown RBP14.14□□□□□ -0.15
SPT8YLR055C APP1P53933 587 aa14.13□□□□□ -0.15
SPT8YLR055C RRP5Q05022 1729 aaKnown RBP14.13□□□□□ -0.15
SPT8YLR055C ADE6P38972 1358 aaKnown RBP14.11□□□□□ -0.15
SPT8YLR055C LEU2P04173 364 aaPredicted RBP14.11□□□□□ -0.15
SPT8YLR055C PRP45P28004 379 aaPredicted RBP14.09□□□□□ -0.15
SPT8YLR055C FUN12P39730 1002 aaKnown RBP14.09□□□□□ -0.15
SPT8YLR055C REB1P21538 810 aa14.08□□□□□ -0.15
SPT8YLR055C YML133CQ03099 1374 aa14.08□□□□□ -0.15
SPT8YLR055C YLL067CQ07888 1374 aa14.08□□□□□ -0.15
SPT8YLR055C YLL066CQ99208 1374 aa14.08□□□□□ -0.15
SPT8YLR055C MTR4P47047 1073 aaKnown RBP14.08□□□□□ -0.16
SPT8YLR055C FKH1P40466 484 aa14.06□□□□□ -0.16
SPT8YLR055C ENT1Q12518 454 aa14.06□□□□□ -0.16
SPT8YLR055C RTG3P38165 486 aa14.05□□□□□ -0.16
SPT8YLR055C CSE4P36012 229 aa14.04□□□□□ -0.16
SPT8YLR055C PRP5P21372 849 aaPredicted RBP14.03□□□□□ -0.16
SPT8YLR055C RPS24AP0CX31 135 aaKnown RBP14.02□□□□□ -0.16
SPT8YLR055C RPS24BP0CX32 135 aaKnown RBP14.02□□□□□ -0.16
SPT8YLR055C YRF1-2P40105 1681 aa14.01□□□□□ -0.17
SPT8YLR055C PRP43P53131 767 aaKnown RBP14.01□□□□□ -0.17
SPT8YLR055C CDC45Q08032 650 aa14□□□□□ -0.17
SPT8YLR055C ENV9Q08651 330 aa14□□□□□ -0.17
SPT8YLR055C RPC31P17890 251 aa13.99□□□□□ -0.17
SPT8YLR055C RPP0P05317 312 aaKnown RBP13.99□□□□□ -0.17
SPT8YLR055C VPS27P40343 622 aaKnown RBP13.99□□□□□ -0.17
SPT8YLR055C MSB3P48566 633 aaPredicted RBP13.97□□□□□ -0.17
SPT8YLR055C RVB2Q12464 471 aaKnown RBP13.95□□□□□ -0.18
SPT8YLR055C PDI1P17967 522 aaKnown RBP13.94□□□□□ -0.18
SPT8YLR055C YIL055CP40523 627 aaKnown RBP13.94□□□□□ -0.18
SPT8YLR055C IME2P32581 645 aa13.94□□□□□ -0.18
SPT8YLR055C YIL177CP40434 1758 aa13.94□□□□□ -0.18
SPT8YLR055C YJL225CP40889 1758 aa13.94□□□□□ -0.18
SPT8YLR055C YPR148CQ06523 435 aa13.92□□□□□ -0.18
SPT8YLR055C IMH1Q06704 911 aaKnown RBP13.92□□□□□ -0.18
SPT8YLR055C FPR3P38911 411 aaKnown RBP13.92□□□□□ -0.18
SPT8YLR055C RTF1P53064 558 aa13.92□□□□□ -0.18
SPT8YLR055C GAS4Q08271 471 aa13.9□□□□□ -0.18
SPT8YLR055C SLM3Q12093 417 aa13.9□□□□□ -0.18
SPT8YLR055C TCB1Q12466 1186 aa13.89□□□□□ -0.19
SPT8YLR055C DPS1P04802 557 aaKnown RBP13.88□□□□□ -0.19
SPT8YLR055C YFR016CP43597 1233 aaKnown RBP13.88□□□□□ -0.19
SPT8YLR055C OPY1P38271 328 aa13.87□□□□□ -0.19
SPT8YLR055C TAP42Q04372 366 aa13.87□□□□□ -0.19
SPT8YLR055C YDL144CQ07589 356 aa13.87□□□□□ -0.19
SPT8YLR055C FKS3Q04952 1785 aa13.86□□□□□ -0.19
SPT8YLR055C URB1P34241 1764 aaKnown RBP13.86□□□□□ -0.19
SPT8YLR055C GRX4P32642 244 aa13.84□□□□□ -0.19
SPT8YLR055C HIM1Q06674 414 aa13.84□□□□□ -0.19
SPT8YLR055C AUS1Q08409 1394 aa13.84□□□□□ -0.19
SPT8YLR055C RSF2P46974 1380 aa13.83□□□□□ -0.2
SPT8YLR055C KAR2P16474 682 aaKnown RBP13.81□□□□□ -0.2
SPT8YLR055C CLC1P17891 233 aa13.81□□□□□ -0.2
SPT8YLR055C GLN1P32288 370 aaKnown RBP13.81□□□□□ -0.2
SPT8YLR055C IES2P40154 320 aa13.81□□□□□ -0.2
SPT8YLR055C YRB30P53107 440 aaPredicted RBP13.81□□□□□ -0.2
SPT8YLR055C IOC4Q04213 475 aa13.81□□□□□ -0.2
SPT8YLR055C YEF3P16521 1044 aaKnown RBP13.8□□□□□ -0.2
SPT8YLR055C APC1P53886 1748 aa13.8□□□□□ -0.2
SPT8YLR055C TRK1P12685 1235 aa13.79□□□□□ -0.2
SPT8YLR055C CAB3P36076 571 aa13.79□□□□□ -0.2
SPT8YLR055C XKS1P42826 600 aa13.79□□□□□ -0.2
SPT8YLR055C YRF1-3P0CX14 1859 aa13.79□□□□□ -0.2
SPT8YLR055C YRF1-7P0CX15 1859 aa13.79□□□□□ -0.2
SPT8YLR055C YRF1-6P53819 1859 aa13.79□□□□□ -0.2
SPT8YLR055C SUI2P20459 304 aaKnown RBP13.78□□□□□ -0.2
SPT8YLR055C EAF7P53911 425 aaKnown RBP13.78□□□□□ -0.2
SPT8YLR055C SNF2P22082 1703 aa13.78□□□□□ -0.2
SPT8YLR055C YMR074CQ04773 145 aa13.74□□□□□ -0.21
SPT8YLR055C MPP10P47083 593 aaKnown RBP13.73□□□□□ -0.21
SPT8YLR055C PAP2P53632 584 aaKnown RBP13.72□□□□□ -0.21
SPT8YLR055C ROM2P51862 1356 aaKnown RBP13.71□□□□□ -0.22
SPT8YLR055C RPO41P13433 1351 aaKnown RBP13.7□□□□□ -0.22
SPT8YLR055C NAB6Q03735 1134 aaKnown RBP RIP-Chip data13.7□□□□□ -0.22not detected
SPT8YLR055C YKL133CP36066 463 aa13.69□□□□□ -0.22
SPT8YLR055C DOT5P40553 215 aa13.69□□□□□ -0.22
SPT8YLR055C YIR014WP40570 242 aa13.69□□□□□ -0.22
SPT8YLR055C BUB1P41695 1021 aaKnown RBP RIP-Chip data13.69□□□□□ -0.22not detected
SPT8YLR055C RCR1P38212 213 aa13.68□□□□□ -0.22
SPT8YLR055C EBP2P36049 427 aaKnown RBP13.67□□□□□ -0.22
SPT8YLR055C FOX2Q02207 900 aaKnown RBP13.66□□□□□ -0.22
SPT8YLR055C SIR4P11978 1358 aa13.66□□□□□ -0.22
SPT8YLR055C SNF7P39929 240 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms