RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W PPH3P32345 308 aa14.11□□□□□ -0.15
UBA4YHR111W ENV9Q08651 330 aa14.1□□□□□ -0.15
UBA4YHR111W SPE2P21182 396 aa14.09□□□□□ -0.15
UBA4YHR111W KIP3P53086 805 aaKnown RBP14.09□□□□□ -0.15
UBA4YHR111W RRP5Q05022 1729 aaKnown RBP14.08□□□□□ -0.16
UBA4YHR111W PRP45P28004 379 aaPredicted RBP14.05□□□□□ -0.16
UBA4YHR111W PSK1P31374 1356 aa14.04□□□□□ -0.16
UBA4YHR111W IMH1Q06704 911 aaKnown RBP14.02□□□□□ -0.17
UBA4YHR111W TY4B-HP0C2J7 1802 aa14.01□□□□□ -0.17
UBA4YHR111W TY4B-JP47024 1803 aa14.01□□□□□ -0.17
UBA4YHR111W ADE6P38972 1358 aaKnown RBP13.99□□□□□ -0.17
UBA4YHR111W YRF1-2P40105 1681 aa13.99□□□□□ -0.17
UBA4YHR111W PRP5P21372 849 aaPredicted RBP13.98□□□□□ -0.17
UBA4YHR111W ORC1P54784 914 aaPredicted RBP13.98□□□□□ -0.17
UBA4YHR111W YLR419WQ06698 1435 aaKnown RBP13.97□□□□□ -0.17
UBA4YHR111W YMR074CQ04773 145 aa13.97□□□□□ -0.17
UBA4YHR111W CHZ1P40019 153 aaPredicted RBP13.95□□□□□ -0.18
UBA4YHR111W LEU2P04173 364 aaPredicted RBP13.9□□□□□ -0.19
UBA4YHR111W MSB3P48566 633 aaPredicted RBP13.9□□□□□ -0.19
UBA4YHR111W MTR4P47047 1073 aaKnown RBP13.88□□□□□ -0.19
UBA4YHR111W PRP43P53131 767 aaKnown RBP13.88□□□□□ -0.19
UBA4YHR111W SCT1P32784 759 aa13.87□□□□□ -0.19
UBA4YHR111W CSE4P36012 229 aa13.86□□□□□ -0.19
UBA4YHR111W RPS24AP0CX31 135 aaKnown RBP13.84□□□□□ -0.19
UBA4YHR111W RPS24BP0CX32 135 aaKnown RBP13.84□□□□□ -0.19
UBA4YHR111W PRI1P10363 409 aa13.83□□□□□ -0.2
UBA4YHR111W TCB1Q12466 1186 aa13.83□□□□□ -0.2
UBA4YHR111W YML133CQ03099 1374 aa13.82□□□□□ -0.2
UBA4YHR111W YLL067CQ07888 1374 aa13.82□□□□□ -0.2
UBA4YHR111W YLL066CQ99208 1374 aa13.82□□□□□ -0.2
UBA4YHR111W LEU3P08638 886 aa13.81□□□□□ -0.2
UBA4YHR111W SLM3Q12093 417 aa13.81□□□□□ -0.2
UBA4YHR111W BUD31P25337 157 aaPredicted RBP13.8□□□□□ -0.2
UBA4YHR111W IES2P40154 320 aa13.8□□□□□ -0.2
UBA4YHR111W URB1P34241 1764 aaKnown RBP13.8□□□□□ -0.2
UBA4YHR111W RSF2P46974 1380 aa13.79□□□□□ -0.2
UBA4YHR111W FKH1P40466 484 aa13.74□□□□□ -0.21
UBA4YHR111W DOT5P40553 215 aa13.74□□□□□ -0.21
UBA4YHR111W ROM2P51862 1356 aaKnown RBP13.72□□□□□ -0.21
UBA4YHR111W YIL177CP40434 1758 aa13.71□□□□□ -0.21
UBA4YHR111W YJL225CP40889 1758 aa13.71□□□□□ -0.21
UBA4YHR111W RPN11P43588 306 aaKnown RBP13.71□□□□□ -0.21
UBA4YHR111W FKS3Q04952 1785 aa13.71□□□□□ -0.22
UBA4YHR111W UBP1P25037 809 aa13.7□□□□□ -0.22
UBA4YHR111W YRF1-3P0CX14 1859 aa13.7□□□□□ -0.22
UBA4YHR111W YRF1-7P0CX15 1859 aa13.7□□□□□ -0.22
UBA4YHR111W YRF1-6P53819 1859 aa13.7□□□□□ -0.22
UBA4YHR111W MLP1Q02455 1875 aaKnown RBP13.7□□□□□ -0.22
UBA4YHR111W XKS1P42826 600 aa13.69□□□□□ -0.22
UBA4YHR111W ENP1P38333 483 aaKnown RBP13.68□□□□□ -0.22
UBA4YHR111W FOX2Q02207 900 aaKnown RBP13.68□□□□□ -0.22
UBA4YHR111W RTG3P38165 486 aa13.67□□□□□ -0.22
UBA4YHR111W DPS1P04802 557 aaKnown RBP13.65□□□□□ -0.22
UBA4YHR111W YEF3P16521 1044 aaKnown RBP13.65□□□□□ -0.22
UBA4YHR111W PDI1P17967 522 aaKnown RBP13.65□□□□□ -0.22
UBA4YHR111W YKL133CP36066 463 aa13.65□□□□□ -0.22
UBA4YHR111W RTF1P53064 558 aa13.65□□□□□ -0.22
UBA4YHR111W GAS4Q08271 471 aa13.65□□□□□ -0.22
UBA4YHR111W APC1P53886 1748 aa13.65□□□□□ -0.22
UBA4YHR111W POL5P39985 1022 aaKnown RBP13.64□□□□□ -0.23
UBA4YHR111W EDE1P34216 1381 aa13.63□□□□□ -0.23
UBA4YHR111W MHP1P43638 1398 aa13.62□□□□□ -0.23
UBA4YHR111W YJL181WP46987 611 aa13.61□□□□□ -0.23
UBA4YHR111W NPR2P39923 615 aa13.6□□□□□ -0.23
UBA4YHR111W COBP00163 385 aa13.59□□□□□ -0.23
UBA4YHR111W PDS5Q04264 1277 aa13.59□□□□□ -0.23
UBA4YHR111W TAP42Q04372 366 aa13.59□□□□□ -0.23
UBA4YHR111W LAM6Q08001 693 aa13.59□□□□□ -0.23
UBA4YHR111W AUS1Q08409 1394 aa13.57□□□□□ -0.24
UBA4YHR111W GRX4P32642 244 aa13.57□□□□□ -0.24
UBA4YHR111W PRP40P33203 583 aaKnown RBP13.57□□□□□ -0.24
UBA4YHR111W YBL086CP38177 466 aa13.56□□□□□ -0.24
UBA4YHR111W YRF1-4O13559 1382 aa13.55□□□□□ -0.24
UBA4YHR111W YKR075CP36155 307 aa13.55□□□□□ -0.24
UBA4YHR111W RCR1P38212 213 aa13.55□□□□□ -0.24
UBA4YHR111W LYS4P49367 693 aaPredicted RBP13.55□□□□□ -0.24
UBA4YHR111W SIR4P11978 1358 aa13.54□□□□□ -0.24
UBA4YHR111W HIM1Q06674 414 aa13.54□□□□□ -0.24
UBA4YHR111W SEC3P33332 1336 aaKnown RBP13.54□□□□□ -0.24
UBA4YHR111W MEC3Q02574 474 aa13.53□□□□□ -0.24
UBA4YHR111W GTT3P39996 337 aa13.51□□□□□ -0.25
UBA4YHR111W FRK1Q03002 865 aaPredicted RBP13.51□□□□□ -0.25
UBA4YHR111W SNF2P22082 1703 aa13.5□□□□□ -0.25
UBA4YHR111W UGA2P38067 497 aa13.49□□□□□ -0.25
UBA4YHR111W ADE16P54113 591 aaKnown RBP13.49□□□□□ -0.25
UBA4YHR111W ALD2P47771 506 aa13.48□□□□□ -0.25
UBA4YHR111W SSA2P10592 639 aaKnown RBP13.45□□□□□ -0.26
UBA4YHR111W KAR2P16474 682 aaKnown RBP13.45□□□□□ -0.26
UBA4YHR111W CTH1P47976 325 aa13.45□□□□□ -0.26
UBA4YHR111W RPO41P13433 1351 aaKnown RBP13.43□□□□□ -0.26
UBA4YHR111W ATG13Q06628 738 aa13.41□□□□□ -0.26
UBA4YHR111W BUB1P41695 1021 aaKnown RBP RIP-Chip data13.4□□□□□ -0.26not detected
UBA4YHR111W INP54Q08227 384 aaKnown RBP13.39□□□□□ -0.27
UBA4YHR111W NST1P53935 1240 aa13.38□□□□□ -0.27
UBA4YHR111W TRK1P12685 1235 aa13.37□□□□□ -0.27
UBA4YHR111W OSM1P21375 501 aaKnown RBP13.37□□□□□ -0.27
UBA4YHR111W PAP2P53632 584 aaKnown RBP13.37□□□□□ -0.27
UBA4YHR111W MSB4Q12317 492 aa13.37□□□□□ -0.27
UBA4YHR111W DSD1P53095 428 aa13.36□□□□□ -0.27
UBA4YHR111W RIM15P43565 1770 aa13.35□□□□□ -0.27
Retrieved 100 of 5,963 RNA–protein pairs in 154.4 ms