RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C YRF1-2P40105 1681 aa18.69■□□□□ 0.58
SHU1YHL006C RCM1P53972 490 aa18.69■□□□□ 0.58
SHU1YHL006C TY4B-HP0C2J7 1802 aa18.65■□□□□ 0.58
SHU1YHL006C TY4B-JP47024 1803 aa18.65■□□□□ 0.58
SHU1YHL006C YMR074CQ04773 145 aa18.63■□□□□ 0.57
SHU1YHL006C PPH3P32345 308 aa18.62■□□□□ 0.57
SHU1YHL006C IMH1Q06704 911 aaKnown RBP18.62■□□□□ 0.57
SHU1YHL006C PRP45P28004 379 aaPredicted RBP18.6■□□□□ 0.57
SHU1YHL006C PRP5P21372 849 aaPredicted RBP18.48■□□□□ 0.55
SHU1YHL006C ADE6P38972 1358 aaKnown RBP18.47■□□□□ 0.55
SHU1YHL006C SPE2P21182 396 aa18.47■□□□□ 0.55
SHU1YHL006C PSK1P31374 1356 aa18.46■□□□□ 0.55
SHU1YHL006C PRI1P10363 409 aa18.46■□□□□ 0.55
SHU1YHL006C KIP3P53086 805 aaKnown RBP18.45■□□□□ 0.54
SHU1YHL006C URB1P34241 1764 aaKnown RBP18.4■□□□□ 0.54
SHU1YHL006C BUD31P25337 157 aaPredicted RBP18.4■□□□□ 0.54
SHU1YHL006C MSB3P48566 633 aaPredicted RBP18.4■□□□□ 0.54
SHU1YHL006C FKS3Q04952 1785 aa18.31■□□□□ 0.52
SHU1YHL006C LEU3P08638 886 aa18.3■□□□□ 0.52
SHU1YHL006C YLR419WQ06698 1435 aaKnown RBP18.3■□□□□ 0.52
SHU1YHL006C CHZ1P40019 153 aaPredicted RBP18.29■□□□□ 0.52
SHU1YHL006C ORC1P54784 914 aaPredicted RBP18.29■□□□□ 0.52
SHU1YHL006C IES2P40154 320 aa18.27■□□□□ 0.52
SHU1YHL006C DOT5P40553 215 aa18.26■□□□□ 0.51
SHU1YHL006C PRP43P53131 767 aaKnown RBP18.26■□□□□ 0.51
SHU1YHL006C YIL177CP40434 1758 aa18.25■□□□□ 0.51
SHU1YHL006C YJL225CP40889 1758 aa18.25■□□□□ 0.51
SHU1YHL006C LEU2P04173 364 aaPredicted RBP18.25■□□□□ 0.51
SHU1YHL006C CSE4P36012 229 aa18.25■□□□□ 0.51
SHU1YHL006C TCB1Q12466 1186 aa18.25■□□□□ 0.51
SHU1YHL006C YRF1-3P0CX14 1859 aa18.24■□□□□ 0.51
SHU1YHL006C YRF1-7P0CX15 1859 aa18.24■□□□□ 0.51
SHU1YHL006C YRF1-6P53819 1859 aa18.24■□□□□ 0.51
SHU1YHL006C RPS24AP0CX31 135 aaKnown RBP18.24■□□□□ 0.51
SHU1YHL006C RPS24BP0CX32 135 aaKnown RBP18.24■□□□□ 0.51
SHU1YHL006C SLM3Q12093 417 aa18.24■□□□□ 0.51
SHU1YHL006C RSF2P46974 1380 aa18.23■□□□□ 0.51
SHU1YHL006C RPN11P43588 306 aaKnown RBP18.23■□□□□ 0.51
SHU1YHL006C MTR4P47047 1073 aaKnown RBP18.23■□□□□ 0.51
SHU1YHL006C YML133CQ03099 1374 aa18.18■□□□□ 0.5
SHU1YHL006C YLL067CQ07888 1374 aa18.18■□□□□ 0.5
SHU1YHL006C YLL066CQ99208 1374 aa18.18■□□□□ 0.5
SHU1YHL006C UBP1P25037 809 aa18.18■□□□□ 0.5
SHU1YHL006C FOX2Q02207 900 aaKnown RBP18.17■□□□□ 0.5
SHU1YHL006C ROM2P51862 1356 aaKnown RBP18.17■□□□□ 0.5
SHU1YHL006C APC1P53886 1748 aa18.12■□□□□ 0.49
SHU1YHL006C NPR2P39923 615 aa18.09■□□□□ 0.49
SHU1YHL006C XKS1P42826 600 aa18.08■□□□□ 0.48
SHU1YHL006C YBL086CP38177 466 aa18.07■□□□□ 0.48
SHU1YHL006C EDE1P34216 1381 aa18.05■□□□□ 0.48
SHU1YHL006C YKL133CP36066 463 aa18.05■□□□□ 0.48
SHU1YHL006C YEF3P16521 1044 aaKnown RBP18.04■□□□□ 0.48
SHU1YHL006C LYS4P49367 693 aaPredicted RBP18.04■□□□□ 0.48
SHU1YHL006C ENP1P38333 483 aaKnown RBP18.03■□□□□ 0.48
SHU1YHL006C MLP1Q02455 1875 aaKnown RBP18.01■□□□□ 0.47
SHU1YHL006C YJL181WP46987 611 aa18.01■□□□□ 0.47
SHU1YHL006C COBP00163 385 aa18■□□□□ 0.47
SHU1YHL006C FKH1P40466 484 aa17.99■□□□□ 0.47
SHU1YHL006C SCT1P32784 759 aa17.98■□□□□ 0.47
SHU1YHL006C YKR075CP36155 307 aa17.97■□□□□ 0.47
SHU1YHL006C LAM6Q08001 693 aa17.97■□□□□ 0.47
SHU1YHL006C GAS4Q08271 471 aa17.97■□□□□ 0.47
SHU1YHL006C YRF1-4O13559 1382 aa17.96■□□□□ 0.47
SHU1YHL006C DPS1P04802 557 aaKnown RBP17.95■□□□□ 0.46
SHU1YHL006C PRP40P33203 583 aaKnown RBP17.95■□□□□ 0.46
SHU1YHL006C GTT3P39996 337 aa17.95■□□□□ 0.46
SHU1YHL006C UGA2P38067 497 aa17.94■□□□□ 0.46
SHU1YHL006C SNF2P22082 1703 aa17.92■□□□□ 0.46
SHU1YHL006C CTH1P47976 325 aa17.92■□□□□ 0.46
SHU1YHL006C RTG3P38165 486 aa17.91■□□□□ 0.46
SHU1YHL006C PDI1P17967 522 aaKnown RBP17.9■□□□□ 0.46
SHU1YHL006C ALD2P47771 506 aa17.9■□□□□ 0.46
SHU1YHL006C SSA2P10592 639 aaKnown RBP17.89■□□□□ 0.45
SHU1YHL006C RCR1P38212 213 aa17.87■□□□□ 0.45
SHU1YHL006C RTF1P53064 558 aa17.87■□□□□ 0.45
SHU1YHL006C FRK1Q03002 865 aaPredicted RBP17.86■□□□□ 0.45
SHU1YHL006C SIR4P11978 1358 aa17.85■□□□□ 0.45
SHU1YHL006C AUS1Q08409 1394 aa17.85■□□□□ 0.45
SHU1YHL006C ADE16P54113 591 aaKnown RBP17.83■□□□□ 0.44
SHU1YHL006C MEC3Q02574 474 aa17.81■□□□□ 0.44
SHU1YHL006C TAP42Q04372 366 aa17.79■□□□□ 0.44
SHU1YHL006C HIM1Q06674 414 aa17.79■□□□□ 0.44
SHU1YHL006C RIM15P43565 1770 aa17.79■□□□□ 0.44
SHU1YHL006C SEC3P33332 1336 aaKnown RBP17.77■□□□□ 0.44
SHU1YHL006C GRX4P32642 244 aa17.75■□□□□ 0.43
SHU1YHL006C RPO41P13433 1351 aaKnown RBP17.75■□□□□ 0.43
SHU1YHL006C MHP1P43638 1398 aa17.69■□□□□ 0.42
SHU1YHL006C PDS5Q04264 1277 aa17.69■□□□□ 0.42
SHU1YHL006C ATG13Q06628 738 aa17.68■□□□□ 0.42
SHU1YHL006C BDF1P35817 686 aa17.67■□□□□ 0.42
SHU1YHL006C SSA1P10591 642 aaKnown RBP17.66■□□□□ 0.42
SHU1YHL006C MSB4Q12317 492 aa17.66■□□□□ 0.42
SHU1YHL006C SPT7P35177 1332 aa17.66■□□□□ 0.42
SHU1YHL006C INP54Q08227 384 aaKnown RBP17.65■□□□□ 0.42
SHU1YHL006C RPG1P38249 964 aaKnown RBP17.64■□□□□ 0.41
SHU1YHL006C OSM1P21375 501 aaKnown RBP17.62■□□□□ 0.41
SHU1YHL006C POL5P39985 1022 aaKnown RBP17.62■□□□□ 0.41
SHU1YHL006C ALD3P54114 506 aa17.61■□□□□ 0.41
SHU1YHL006C BUB1P41695 1021 aaKnown RBP RIP-Chip data17.6■□□□□ 0.41not detected
SHU1YHL006C KAR2P16474 682 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms