RNA–Protein interactions for RNA: YGR143W

SKN1, Transcript of Protein involved in sphingolipid biosynthesis, yeastyeast

Gene SKN1, Length 2,316 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKN1YGR143W MAK10Q02197 733 aa7.35□□□□□ -1.23
SKN1YGR143W HSP82P02829 709 aaKnown RBP7.35□□□□□ -1.23
SKN1YGR143W MDG1P53885 366 aa7.35□□□□□ -1.23
SKN1YGR143W TYS1P36421 394 aaKnown RBP7.34□□□□□ -1.23
SKN1YGR143W FUN12P39730 1002 aaKnown RBP7.34□□□□□ -1.23
SKN1YGR143W IPL1P38991 367 aa7.33□□□□□ -1.24
SKN1YGR143W PDR5P33302 1511 aaKnown RBP7.32□□□□□ -1.24
SKN1YGR143W PLP2Q12017 286 aa7.32□□□□□ -1.24
SKN1YGR143W RPN1P38764 993 aaKnown RBP7.32□□□□□ -1.24
SKN1YGR143W SPC110P32380 944 aa7.29□□□□□ -1.24
SKN1YGR143W RIX1P38883 763 aaPredicted RBP7.29□□□□□ -1.24
SKN1YGR143W GRX3Q03835 250 aa7.29□□□□□ -1.24
SKN1YGR143W PDR11P40550 1411 aa7.28□□□□□ -1.24
SKN1YGR143W HAP1P0CE41 1502 aa7.28□□□□□ -1.24
SKN1YGR143W GCN2P15442 1659 aa7.28□□□□□ -1.24
SKN1YGR143W YNL011CP53980 444 aa7.28□□□□□ -1.24
SKN1YGR143W IME2P32581 645 aa7.27□□□□□ -1.25
SKN1YGR143W NMD2P38798 1089 aaKnown RBP7.27□□□□□ -1.25
SKN1YGR143W TIF4632P39936 914 aaKnown RBP7.26□□□□□ -1.25
SKN1YGR143W ORC1P54784 914 aaPredicted RBP7.26□□□□□ -1.25
SKN1YGR143W RPS0AP32905 252 aaKnown RBP7.23□□□□□ -1.25
SKN1YGR143W PIL1P53252 339 aaKnown RBP7.23□□□□□ -1.25
SKN1YGR143W TY1B-NL2Q99337 1749 aaKnown RBP7.22□□□□□ -1.25
SKN1YGR143W HIF1Q12373 385 aa7.22□□□□□ -1.25
SKN1YGR143W VPS4P52917 437 aa7.21□□□□□ -1.26
SKN1YGR143W ETT1Q08421 412 aaKnown RBP7.21□□□□□ -1.26
SKN1YGR143W TOA1P32773 286 aa7.19□□□□□ -1.26
SKN1YGR143W THI12P42883 340 aa7.19□□□□□ -1.26
SKN1YGR143W THI5P43534 340 aa7.19□□□□□ -1.26
SKN1YGR143W THI11P47183 340 aa7.19□□□□□ -1.26
SKN1YGR143W THI13Q07748 340 aa7.19□□□□□ -1.26
SKN1YGR143W DMA1P38823 416 aa7.19□□□□□ -1.26
SKN1YGR143W NHA1Q99271 985 aa7.18□□□□□ -1.26
SKN1YGR143W SSA1P10591 642 aaKnown RBP7.18□□□□□ -1.26
SKN1YGR143W SSA2P10592 639 aaKnown RBP7.18□□□□□ -1.26
SKN1YGR143W TLG1Q03322 224 aa7.18□□□□□ -1.26
SKN1YGR143W DOS2P54858 310 aa7.17□□□□□ -1.26
SKN1YGR143W SUB1P54000 292 aaKnown RBP7.16□□□□□ -1.26
SKN1YGR143W GIN4Q12263 1142 aa7.16□□□□□ -1.26
SKN1YGR143W KRE5P22023 1365 aa7.15□□□□□ -1.26
SKN1YGR143W SWE1P32944 819 aa7.15□□□□□ -1.26
SKN1YGR143W YMR196WQ04336 1088 aa7.15□□□□□ -1.26
SKN1YGR143W NNF2P53253 936 aa7.15□□□□□ -1.27
SKN1YGR143W NUP192P47054 1683 aa7.14□□□□□ -1.27
SKN1YGR143W YSH1Q06224 779 aaPredicted RBP7.13□□□□□ -1.27
SKN1YGR143W RAV1P47104 1357 aa7.13□□□□□ -1.27
SKN1YGR143W MSH3P25336 1018 aa7.12□□□□□ -1.27
SKN1YGR143W EAF7P53911 425 aaKnown RBP7.12□□□□□ -1.27
SKN1YGR143W BCK1Q01389 1478 aa7.12□□□□□ -1.27
SKN1YGR143W CFT1Q06632 1357 aaKnown RBP7.11□□□□□ -1.27
SKN1YGR143W OPY1P38271 328 aa7.11□□□□□ -1.27
SKN1YGR143W MSH4P40965 878 aaPredicted RBP7.11□□□□□ -1.27
SKN1YGR143W RIA1P53893 1110 aa7.11□□□□□ -1.27
SKN1YGR143W ECM16Q04217 1267 aaKnown RBP7.11□□□□□ -1.27
SKN1YGR143W RAD26P40352 1085 aa7.1□□□□□ -1.27
SKN1YGR143W SPT16P32558 1035 aaKnown RBP7.1□□□□□ -1.27
SKN1YGR143W PAF1P38351 445 aa7.1□□□□□ -1.27
SKN1YGR143W SIC1P38634 284 aa7.1□□□□□ -1.27
SKN1YGR143W RAD9P14737 1309 aa7.09□□□□□ -1.27
SKN1YGR143W PRS1P32895 427 aaKnown RBP7.09□□□□□ -1.27
SKN1YGR143W RTC1Q08281 1341 aa7.08□□□□□ -1.28
SKN1YGR143W MRX12P47084 519 aa7.08□□□□□ -1.28
SKN1YGR143W CAB1Q04430 367 aa7.08□□□□□ -1.28
SKN1YGR143W CTR9P89105 1077 aa7.07□□□□□ -1.28
SKN1YGR143W RPN7Q06103 429 aaKnown RBP7.07□□□□□ -1.28
SKN1YGR143W NST1P53935 1240 aa7.06□□□□□ -1.28
SKN1YGR143W LTV1P34078 463 aa7.06□□□□□ -1.28
SKN1YGR143W YNR029CP53729 429 aaKnown RBP7.06□□□□□ -1.28
SKN1YGR143W PRP3Q03338 469 aaPredicted RBP7.05□□□□□ -1.28
SKN1YGR143W MCM1P11746 286 aa7.04□□□□□ -1.28
SKN1YGR143W RRP14P36080 434 aaKnown RBP7.04□□□□□ -1.28
SKN1YGR143W ALD4P46367 519 aaKnown RBP7.04□□□□□ -1.28
SKN1YGR143W NOP7P53261 605 aaKnown RBP7.04□□□□□ -1.28
SKN1YGR143W SNF7P39929 240 aaKnown RBP7.04□□□□□ -1.28
SKN1YGR143W SMC3P47037 1230 aa7.04□□□□□ -1.28
SKN1YGR143W TY3B-IQ7LHG5 1498 aaKnown RBP7.03□□□□□ -1.28
SKN1YGR143W BYE1P36106 594 aa7.03□□□□□ -1.28
SKN1YGR143W TAN1P53072 289 aaPredicted RBP7.03□□□□□ -1.28
SKN1YGR143W TY1B-AO13527 1196 aaKnown RBP7.02□□□□□ -1.28
SKN1YGR143W MPP10P47083 593 aaKnown RBP7.02□□□□□ -1.28
SKN1YGR143W SAP190P36123 1033 aa7.02□□□□□ -1.29
SKN1YGR143W CBF5P33322 483 aaKnown RBP RIP-Chip data7.01□□□□□ -1.29not detected
SKN1YGR143W PEA2P40091 420 aa7.01□□□□□ -1.29
SKN1YGR143W SEC9P40357 651 aa7.01□□□□□ -1.29
SKN1YGR143W NOP8Q08287 484 aaPredicted RBP7.01□□□□□ -1.29
SKN1YGR143W NOP58Q12499 511 aaKnown RBP7.01□□□□□ -1.29
SKN1YGR143W PTP3P40048 928 aa7□□□□□ -1.29
SKN1YGR143W SUP35P05453 685 aaKnown RBP6.99□□□□□ -1.29
SKN1YGR143W ISW1P38144 1129 aa6.99□□□□□ -1.29
SKN1YGR143W DSN1P40568 576 aa6.99□□□□□ -1.29
SKN1YGR143W LEM3P42838 414 aa6.99□□□□□ -1.29
SKN1YGR143W APL5Q08951 932 aaKnown RBP6.99□□□□□ -1.29
SKN1YGR143W BRN1P38170 754 aa6.99□□□□□ -1.29
SKN1YGR143W RSC8P43609 557 aaKnown RBP6.99□□□□□ -1.29
SKN1YGR143W TAF5P38129 798 aa6.98□□□□□ -1.29
SKN1YGR143W TPO2P53283 614 aa6.98□□□□□ -1.29
SKN1YGR143W APP1P53933 587 aa6.98□□□□□ -1.29
SKN1YGR143W BRL1P38770 471 aa6.98□□□□□ -1.29
SKN1YGR143W RPC31P17890 251 aa6.96□□□□□ -1.29
SKN1YGR143W CLB5P30283 435 aa6.96□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 43.2 ms