RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 ABCC5O15440 1437 aa16.27■□□□□ 0.2
ZNF540-210ENST00000592533 MPHOSPH9Q99550 1183 aa16.27■□□□□ 0.19
ZNF540-210ENST00000592533 ANKRD30BQ9BXX2 1392 aa16.26■□□□□ 0.19
ZNF540-210ENST00000592533 WASHC2AQ641Q2 1341 aa16.25■□□□□ 0.19
ZNF540-210ENST00000592533 FKBP8Q14318 412 aa16.25■□□□□ 0.19
ZNF540-210ENST00000592533 CHIC2Q9UKJ5 165 aa16.25■□□□□ 0.19
ZNF540-210ENST00000592533 NCOA1Q15788 1441 aa16.24■□□□□ 0.19
ZNF540-210ENST00000592533 CNTLNQ9NXG0 1405 aa16.24■□□□□ 0.19
ZNF540-210ENST00000592533 HSPA5P11021 654 aaKnown RBP16.24■□□□□ 0.19
ZNF540-210ENST00000592533 MAGI1Q96QZ7 1491 aaPredicted RBP16.22■□□□□ 0.19
ZNF540-210ENST00000592533 EIF4G2P78344 907 aaKnown RBP eCLIP16.21■□□□□ 0.19
ZNF540-210ENST00000592533 ADGRL2O95490 1459 aa16.21■□□□□ 0.19
ZNF540-210ENST00000592533 TRIM52Q96A61 297 aa16.21■□□□□ 0.19
ZNF540-210ENST00000592533 NEFLP07196 543 aa16.21■□□□□ 0.18
ZNF540-210ENST00000592533 TROQ12816 1431 aaPredicted RBP16.2■□□□□ 0.18
ZNF540-210ENST00000592533 CAMSAP2Q08AD1 1489 aa16.2■□□□□ 0.18
ZNF540-210ENST00000592533 SPATA31E1Q6ZUB1 1445 aa16.19■□□□□ 0.18
ZNF540-210ENST00000592533 CEP170Q5SW79 1584 aa16.19■□□□□ 0.18
ZNF540-210ENST00000592533 L3MBTL2Q969R5 705 aa16.19■□□□□ 0.18
ZNF540-210ENST00000592533 PZPP20742 1482 aa16.18■□□□□ 0.18
ZNF540-210ENST00000592533 MBD5Q9P267 1494 aa16.18■□□□□ 0.18
ZNF540-210ENST00000592533 CCDC7Q96M83 1385 aa16.17■□□□□ 0.18
ZNF540-210ENST00000592533 CDK11AQ9UQ88 783 aaPredicted RBP16.17■□□□□ 0.18
ZNF540-210ENST00000592533 KIF14Q15058 1648 aa16.16■□□□□ 0.18
ZNF540-210ENST00000592533 SYNJ2O15056 1496 aa16.15■□□□□ 0.18
ZNF540-210ENST00000592533 GPATCH8Q9UKJ3 1502 aaKnown RBP16.15■□□□□ 0.18
ZNF540-210ENST00000592533 CDC42BPAQ5VT25 1732 aa16.13■□□□□ 0.17
ZNF540-210ENST00000592533 BCANQ96GW7 911 aa16.13■□□□□ 0.17
ZNF540-210ENST00000592533 NUP160Q12769 1436 aa16.12■□□□□ 0.17
ZNF540-210ENST00000592533 PRG4Q92954 1404 aaPredicted RBP16.12■□□□□ 0.17
ZNF540-210ENST00000592533 SHANK2Q9UPX8 1470 aa16.11■□□□□ 0.17
ZNF540-210ENST00000592533 ZNF644Q9H582 1327 aaPredicted RBP16.11■□□□□ 0.17
ZNF540-210ENST00000592533 NBPF8Q3BBV2 869 aa16.1■□□□□ 0.17
ZNF540-210ENST00000592533 ABCA8O94911 1581 aa16.1■□□□□ 0.17
ZNF540-210ENST00000592533 PLB1Q6P1J6 1458 aa16.1■□□□□ 0.17
ZNF540-210ENST00000592533 KIAA1107Q9UPP5 1409 aa16.1■□□□□ 0.17
ZNF540-210ENST00000592533 FOXD1Q16676 465 aa16.09■□□□□ 0.17
ZNF540-210ENST00000592533 KDM5DQ9BY66 1539 aa16.09■□□□□ 0.17
ZNF540-210ENST00000592533 C11orf95C9JLR9 678 aaPredicted RBP16.09■□□□□ 0.17
ZNF540-210ENST00000592533 HNRNPUQ00839 825 aaKnown RBP eCLIP16.08■□□□□ 0.17
ZNF540-210ENST00000592533 ERICH6BQ5W0A0 696 aa16.08■□□□□ 0.16
ZNF540-210ENST00000592533 PRKRIP1Q9H875 184 aaPredicted RBP16.08■□□□□ 0.16
ZNF540-210ENST00000592533 KDM5CP41229 1560 aa16.07■□□□□ 0.16
ZNF540-210ENST00000592533 ARID3CA6NKF2 412 aa16.07■□□□□ 0.16
ZNF540-210ENST00000592533 SLC4A1APQ9BWU0 796 aaKnown RBP16.07■□□□□ 0.16
ZNF540-210ENST00000592533 CARMIL2Q6F5E8 1435 aa16.07■□□□□ 0.16
ZNF540-210ENST00000592533 ABCC10Q5T3U5 1492 aa16.06■□□□□ 0.16
ZNF540-210ENST00000592533 BCORL1Q5H9F3 1711 aa16.06■□□□□ 0.16
ZNF540-210ENST00000592533 ARHGEF12Q9NZN5 1544 aa16.05■□□□□ 0.16
ZNF540-210ENST00000592533 KIF7Q2M1P5 1343 aa16.05■□□□□ 0.16
ZNF540-210ENST00000592533 UHRF1BP1Q6BDS2 1440 aa16.04■□□□□ 0.16
ZNF540-210ENST00000592533 ANKRD30AQ9BXX3 1397 aa16.04■□□□□ 0.16
ZNF540-210ENST00000592533 CFDP1Q9UEE9 299 aaPredicted RBP16.04■□□□□ 0.16
ZNF540-210ENST00000592533 ARHGEF5Q12774 1597 aa16.04■□□□□ 0.16
ZNF540-210ENST00000592533 ANP32EQ9BTT0 268 aa16.02■□□□□ 0.16
ZNF540-210ENST00000592533 ARID4BQ4LE39 1312 aaPredicted RBP16.01■□□□□ 0.15
ZNF540-210ENST00000592533 ZBED9Q6R2W3 1325 aa16.01■□□□□ 0.15
ZNF540-210ENST00000592533 RALGAPBQ86X10 1494 aa16.01■□□□□ 0.15
ZNF540-210ENST00000592533 ANKRD50Q9ULJ7 1429 aa16■□□□□ 0.15
ZNF540-210ENST00000592533 CCDC184Q52MB2 194 aa16■□□□□ 0.15
ZNF540-210ENST00000592533 RBM19Q9Y4C8 960 aaKnown RBP16■□□□□ 0.15
ZNF540-210ENST00000592533 DHX29Q7Z478 1369 aaKnown RBP16■□□□□ 0.15
ZNF540-210ENST00000592533 PTPRGP23470 1445 aa15.99■□□□□ 0.15
ZNF540-210ENST00000592533 ERCC6Q03468 1493 aa15.98■□□□□ 0.15
ZNF540-210ENST00000592533 C9orf84Q5VXU9 1444 aa15.97■□□□□ 0.15
ZNF540-210ENST00000592533 CHMP7Q8WUX9 453 aaPredicted RBP15.97■□□□□ 0.15
ZNF540-210ENST00000592533 ATP10BO94823 1461 aa15.97■□□□□ 0.15
ZNF540-210ENST00000592533 USP47Q96K76 1375 aa15.97■□□□□ 0.15
ZNF540-210ENST00000592533 E9PCH4 1651 aa15.96■□□□□ 0.15
ZNF540-210ENST00000592533 PREX2Q70Z35 1606 aa15.96■□□□□ 0.15
ZNF540-210ENST00000592533 JPH4Q96JJ6 628 aa15.95■□□□□ 0.14
ZNF540-210ENST00000592533 MRS2Q9HD23 443 aa15.95■□□□□ 0.14
ZNF540-210ENST00000592533 CDC42BPBQ9Y5S2 1711 aa15.94■□□□□ 0.14
ZNF540-210ENST00000592533 ROCK2O75116 1388 aaKnown RBP15.93■□□□□ 0.14
ZNF540-210ENST00000592533 PKD2Q13563 968 aa15.93■□□□□ 0.14
ZNF540-210ENST00000592533 MAST1Q9Y2H9 1570 aa15.91■□□□□ 0.14
ZNF540-210ENST00000592533 PPP4R2Q9NY27 417 aa15.91■□□□□ 0.14
ZNF540-210ENST00000592533 SAMD9LQ8IVG5 1584 aa15.91■□□□□ 0.14
ZNF540-210ENST00000592533 SMG6Q86US8 1419 aaKnown RBP15.9■□□□□ 0.14
ZNF540-210ENST00000592533 PLEKHD1A6NEE1 506 aa15.9■□□□□ 0.14
ZNF540-210ENST00000592533 UNC13BO14795 1591 aa15.89■□□□□ 0.13
ZNF540-210ENST00000592533 FAM9BQ8IZU0 186 aa15.88■□□□□ 0.13
ZNF540-210ENST00000592533 FANCIQ9NVI1 1328 aa15.88■□□□□ 0.13
ZNF540-210ENST00000592533 NUP155O75694 1391 aa15.88■□□□□ 0.13
ZNF540-210ENST00000592533 CCDC141Q6ZP82 1450 aa15.88■□□□□ 0.13
ZNF540-210ENST00000592533 ZNF777Q9ULD5 760 aaPredicted RBP15.88■□□□□ 0.13
ZNF540-210ENST00000592533 LAMC1P11047 1609 aa15.87■□□□□ 0.13
ZNF540-210ENST00000592533 TRPM1Q7Z4N2 1603 aa15.87■□□□□ 0.13
ZNF540-210ENST00000592533 KIF15Q9NS87 1388 aa15.86■□□□□ 0.13
ZNF540-210ENST00000592533 FAM135AQ9P2D6 1515 aa15.86■□□□□ 0.13
ZNF540-210ENST00000592533 KTN1Q86UP2 1357 aaKnown RBP15.86■□□□□ 0.13
ZNF540-210ENST00000592533 SHROOM2Q13796 1616 aa15.85■□□□□ 0.13
ZNF540-210ENST00000592533 PLXNC1O60486 1568 aa15.85■□□□□ 0.13
ZNF540-210ENST00000592533 RNF123Q5XPI4 1314 aa15.84■□□□□ 0.13
ZNF540-210ENST00000592533 IRX6P78412 446 aaPredicted RBP15.84■□□□□ 0.13
ZNF540-210ENST00000592533 IQGAP3Q86VI3 1631 aa15.82■□□□□ 0.12
ZNF540-210ENST00000592533 TSPY4P0CV99 314 aa15.81■□□□□ 0.12
ZNF540-210ENST00000592533 TSPY10P0CW01 314 aa15.81■□□□□ 0.12
ZNF540-210ENST00000592533 RSPH4AQ5TD94 716 aa15.81■□□□□ 0.12
ZNF540-210ENST00000592533 MYO5CQ9NQX4 1742 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms