RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ABCA5Q8WWZ7 1642 aa8.69□□□□□ -1.02
LIG3-210ENST00000588109 GOLGA2Q08379 1002 aa8.68□□□□□ -1.02
LIG3-210ENST00000588109 RNF25Q96BH1 459 aaPredicted RBP8.68□□□□□ -1.02
LIG3-210ENST00000588109 TMEM106CQ9BVX2 250 aa8.68□□□□□ -1.02
LIG3-210ENST00000588109 AQRO60306 1485 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIG3-210ENST00000588109 PBRM1Q86U86 1689 aa8.66□□□□□ -1.02
LIG3-210ENST00000588109 GRIN2BQ13224 1484 aa8.65□□□□□ -1.02
LIG3-210ENST00000588109 TRPC6Q9Y210 931 aa8.65□□□□□ -1.02
LIG3-210ENST00000588109 ERICH3Q5RHP9 1530 aa8.64□□□□□ -1.03
LIG3-210ENST00000588109 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.64□□□□□ -1.03
LIG3-210ENST00000588109 STK25O00506 426 aa8.64□□□□□ -1.03
LIG3-210ENST00000588109 ZFP91Q96JP5 570 aaPredicted RBP8.64□□□□□ -1.03
LIG3-210ENST00000588109 IGF1RP08069 1367 aa8.63□□□□□ -1.03
LIG3-210ENST00000588109 TTLL13PA6NNM8 815 aa8.63□□□□□ -1.03
LIG3-210ENST00000588109 CHGAP10645 457 aaKnown RBP8.63□□□□□ -1.03
LIG3-210ENST00000588109 BMP2KQ9NSY1 1161 aaPredicted RBP8.63□□□□□ -1.03
LIG3-210ENST00000588109 CUL7Q14999 1698 aa8.62□□□□□ -1.03
LIG3-210ENST00000588109 ATMINO43313 823 aaPredicted RBP8.62□□□□□ -1.03
LIG3-210ENST00000588109 STK24Q9Y6E0 443 aa8.62□□□□□ -1.03
LIG3-210ENST00000588109 SNAPC4Q5SXM2 1469 aa8.62□□□□□ -1.03
LIG3-210ENST00000588109 CARMIL1Q5VZK9 1371 aa8.61□□□□□ -1.03
LIG3-210ENST00000588109 ASTLQ6HA08 431 aaPredicted RBP8.61□□□□□ -1.03
LIG3-210ENST00000588109 BCL11BQ9C0K0 894 aaPredicted RBP8.61□□□□□ -1.03
LIG3-210ENST00000588109 MAGI1Q96QZ7 1491 aaPredicted RBP8.6□□□□□ -1.03
LIG3-210ENST00000588109 ATN1P54259 1190 aaPredicted RBP8.6□□□□□ -1.03
LIG3-210ENST00000588109 KIF21BO75037 1637 aa8.6□□□□□ -1.03
LIG3-210ENST00000588109 ADAMTS12P58397 1594 aa8.6□□□□□ -1.03
LIG3-210ENST00000588109 GOLGA3Q08378 1498 aa8.59□□□□□ -1.03
LIG3-210ENST00000588109 PRXQ9BXM0 1461 aa8.59□□□□□ -1.03
LIG3-210ENST00000588109 MKRN3Q13064 507 aaKnown RBP8.59□□□□□ -1.03
LIG3-210ENST00000588109 CABP2Q9NPB3 220 aa8.59□□□□□ -1.03
LIG3-210ENST00000588109 TRIM35Q9UPQ4 493 aa8.59□□□□□ -1.03
LIG3-210ENST00000588109 FHAD1B1AJZ9 1412 aa8.59□□□□□ -1.03
LIG3-210ENST00000588109 RAPGEF2Q9Y4G8 1499 aa8.58□□□□□ -1.04
LIG3-210ENST00000588109 CHMP7Q8WUX9 453 aaPredicted RBP8.58□□□□□ -1.04
LIG3-210ENST00000588109 SYNJ2O15056 1496 aa8.57□□□□□ -1.04
LIG3-210ENST00000588109 LOC105371045A0A1W2PR82 267 aa8.57□□□□□ -1.04
LIG3-210ENST00000588109 UBTFP17480 764 aaKnown RBP8.57□□□□□ -1.04
LIG3-210ENST00000588109 POTEIP0CG38 1075 aa8.56□□□□□ -1.04
LIG3-210ENST00000588109 SLC39A7Q92504 469 aa8.56□□□□□ -1.04
LIG3-210ENST00000588109 SEC24BO95487 1268 aa8.55□□□□□ -1.04
LIG3-210ENST00000588109 C7P10643 843 aa8.55□□□□□ -1.04
LIG3-210ENST00000588109 HS6ST3Q8IZP7 471 aa8.55□□□□□ -1.04
LIG3-210ENST00000588109 GRIN2AQ12879 1464 aa8.54□□□□□ -1.04
LIG3-210ENST00000588109 CHD1O14646 1710 aa8.54□□□□□ -1.04
LIG3-210ENST00000588109 IER5LQ5T953 404 aa8.53□□□□□ -1.04
LIG3-210ENST00000588109 PELP1Q8IZL8 1130 aaKnown RBP8.53□□□□□ -1.04
LIG3-210ENST00000588109 EFCAB3Q8N7B9 438 aa8.52□□□□□ -1.05
LIG3-210ENST00000588109 CTTNBP2Q8WZ74 1663 aa8.51□□□□□ -1.05
LIG3-210ENST00000588109 TNIKQ9UKE5 1360 aa8.5□□□□□ -1.05
LIG3-210ENST00000588109 SOX12O15370 315 aa8.5□□□□□ -1.05
LIG3-210ENST00000588109 RANGAP1P46060 587 aaPredicted RBP8.5□□□□□ -1.05
LIG3-210ENST00000588109 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIG3-210ENST00000588109 METRNQ9UJH8 293 aa8.5□□□□□ -1.05
LIG3-210ENST00000588109 PLCG2P16885 1265 aa8.49□□□□□ -1.05
LIG3-210ENST00000588109 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.49□□□□□ -1.05
LIG3-210ENST00000588109 CEP170Q5SW79 1584 aa8.48□□□□□ -1.05
LIG3-210ENST00000588109 NLRP6P59044 892 aa8.48□□□□□ -1.05
LIG3-210ENST00000588109 OCEL1Q9H607 264 aa8.48□□□□□ -1.05
LIG3-210ENST00000588109 NUP160Q12769 1436 aa8.47□□□□□ -1.05
LIG3-210ENST00000588109 BBXQ8WY36 941 aaPredicted RBP8.47□□□□□ -1.05
LIG3-210ENST00000588109 RYDENQ9NUL5 291 aaKnown RBP8.47□□□□□ -1.05
LIG3-210ENST00000588109 IQGAP2Q13576 1575 aa8.47□□□□□ -1.05
LIG3-210ENST00000588109 KIAA0586Q9BVV6 1533 aa8.46□□□□□ -1.05
LIG3-210ENST00000588109 CEP162Q5TB80 1403 aa8.46□□□□□ -1.06
LIG3-210ENST00000588109 G3V3G9 751 aa8.45□□□□□ -1.06
LIG3-210ENST00000588109 SLC24A1O60721 1099 aa8.44□□□□□ -1.06
LIG3-210ENST00000588109 CLIP1P30622 1438 aa8.44□□□□□ -1.06
LIG3-210ENST00000588109 IRX5P78411 483 aaPredicted RBP8.43□□□□□ -1.06
LIG3-210ENST00000588109 DNAJC5Q9H3Z4 198 aa8.43□□□□□ -1.06
LIG3-210ENST00000588109 PHF8Q9UPP1 1060 aa8.43□□□□□ -1.06
LIG3-210ENST00000588109 COLQQ9Y215 455 aaPredicted RBP8.42□□□□□ -1.06
LIG3-210ENST00000588109 CLASP1Q7Z460 1538 aa8.42□□□□□ -1.06
LIG3-210ENST00000588109 EFCAB5A4FU69 1503 aa8.41□□□□□ -1.06
LIG3-210ENST00000588109 JPH4Q96JJ6 628 aa8.41□□□□□ -1.06
LIG3-210ENST00000588109 L3MBTL3Q96JM7 780 aaPredicted RBP8.41□□□□□ -1.06
LIG3-210ENST00000588109 UGGT2Q9NYU1 1516 aa8.4□□□□□ -1.06
LIG3-210ENST00000588109 P3H3Q8IVL6 736 aa8.4□□□□□ -1.06
LIG3-210ENST00000588109 MFRPQ9BY79 579 aa8.4□□□□□ -1.06
LIG3-210ENST00000588109 ARHGAP35Q9NRY4 1499 aa8.39□□□□□ -1.07
LIG3-210ENST00000588109 CARMIL2Q6F5E8 1435 aa8.39□□□□□ -1.07
LIG3-210ENST00000588109 SPRYD3Q8NCJ5 442 aa8.39□□□□□ -1.07
LIG3-210ENST00000588109 SAMD9Q5K651 1589 aa8.39□□□□□ -1.07
LIG3-210ENST00000588109 PRG4Q92954 1404 aaPredicted RBP8.38□□□□□ -1.07
LIG3-210ENST00000588109 NKX1-1Q15270 411 aaPredicted RBP8.38□□□□□ -1.07
LIG3-210ENST00000588109 CFAP44Q96MT7 982 aa8.38□□□□□ -1.07
LIG3-210ENST00000588109 KIAA0556O60303 1618 aa8.38□□□□□ -1.07
LIG3-210ENST00000588109 SHROOM2Q13796 1616 aa8.38□□□□□ -1.07
LIG3-210ENST00000588109 TTBK1Q5TCY1 1321 aaPredicted RBP8.37□□□□□ -1.07
LIG3-210ENST00000588109 PAXIP1Q6ZW49 1069 aaPredicted RBP8.37□□□□□ -1.07
LIG3-210ENST00000588109 DISP1Q96F81 1524 aa8.37□□□□□ -1.07
LIG3-210ENST00000588109 FHOD3Q2V2M9 1422 aa8.37□□□□□ -1.07
LIG3-210ENST00000588109 DPY19L2Q6NUT2 758 aa8.36□□□□□ -1.07
LIG3-210ENST00000588109 PDCD7Q8N8D1 485 aaKnown RBP8.36□□□□□ -1.07
LIG3-210ENST00000588109 FBXO22Q8NEZ5 403 aa8.36□□□□□ -1.07
LIG3-210ENST00000588109 ARAP1Q96P48 1450 aa8.36□□□□□ -1.07
LIG3-210ENST00000588109 POTEFA5A3E0 1075 aa8.35□□□□□ -1.07
LIG3-210ENST00000588109 LHX8Q68G74 356 aa8.35□□□□□ -1.07
LIG3-210ENST00000588109 MAMSTRQ6ZN01 415 aa8.35□□□□□ -1.07
LIG3-210ENST00000588109 ILDR1Q86SU0 546 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms