RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
LIG3-210ENST00000588109 CHIC1Q5VXU3 224 aa17■□□□□ 0.31
LIG3-210ENST00000588109 PHF23Q9BUL5 403 aaPredicted RBP14.89□□□□□ -0.03
LIG3-210ENST00000588109 SENP3Q9H4L4 574 aaPredicted RBP14.86□□□□□ -0.03
LIG3-210ENST00000588109 PLPPR3Q6T4P5 718 aa13.85□□□□□ -0.19
LIG3-210ENST00000588109 FOXD1Q16676 465 aa13.73□□□□□ -0.21
LIG3-210ENST00000588109 ADRA2BP18089 450 aa13.2□□□□□ -0.3
LIG3-210ENST00000588109 PPP6R1Q9UPN7 881 aa13.17□□□□□ -0.3
LIG3-210ENST00000588109 PIAS4Q8N2W9 510 aaPredicted RBP13□□□□□ -0.33
LIG3-210ENST00000588109 MSH5O43196 834 aa12.75□□□□□ -0.37
LIG3-210ENST00000588109 NISCHQ9Y2I1 1504 aa12.29□□□□□ -0.44
LIG3-210ENST00000588109 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
LIG3-210ENST00000588109 PPP4R3CPQ6ZMV5 832 aa12.18□□□□□ -0.46
LIG3-210ENST00000588109 MAPK8IP2Q13387 824 aaPredicted RBP11.97□□□□□ -0.49
LIG3-210ENST00000588109 NCBP3Q53F19 620 aaKnown RBP11.94□□□□□ -0.5
LIG3-210ENST00000588109 CNKSR2Q8WXI2 1034 aa11.86□□□□□ -0.51
LIG3-210ENST00000588109 KCNA4P22459 653 aa11.83□□□□□ -0.52
LIG3-210ENST00000588109 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
LIG3-210ENST00000588109 NPM3O75607 178 aaKnown RBP11.64□□□□□ -0.55
LIG3-210ENST00000588109 RNF216Q9NWF9 866 aaPredicted RBP11.62□□□□□ -0.55
LIG3-210ENST00000588109 POTEDQ86YR6 584 aa11.61□□□□□ -0.55
LIG3-210ENST00000588109 HOXD11P31277 338 aaPredicted RBP11.55□□□□□ -0.56
LIG3-210ENST00000588109 DCAF8L1A6NGE4 600 aa11.44□□□□□ -0.58
LIG3-210ENST00000588109 SLC4A1APQ9BWU0 796 aaKnown RBP11.33□□□□□ -0.6
LIG3-210ENST00000588109 DNAJC5BQ9UF47 199 aa11.26□□□□□ -0.61
LIG3-210ENST00000588109 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIG3-210ENST00000588109 SLC4A2P04920 1241 aa10.97□□□□□ -0.65
LIG3-210ENST00000588109 EHMT2Q96KQ7 1210 aa10.96□□□□□ -0.65
LIG3-210ENST00000588109 FOXD4L1Q9NU39 408 aa10.94□□□□□ -0.66
LIG3-210ENST00000588109 RNF39Q9H2S5 420 aa10.87□□□□□ -0.67
LIG3-210ENST00000588109 CCDC180Q9P1Z9 1646 aa10.83□□□□□ -0.68
LIG3-210ENST00000588109 U3KPZ7 1027 aaPredicted RBP10.82□□□□□ -0.68
LIG3-210ENST00000588109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.81□□□□□ -0.68
LIG3-210ENST00000588109 ZBTB22O15209 634 aa10.81□□□□□ -0.68
LIG3-210ENST00000588109 MYCNP04198 464 aaPredicted RBP10.81□□□□□ -0.68
LIG3-210ENST00000588109 HNRNPUL2Q1KMD3 747 aaKnown RBP10.81□□□□□ -0.68
LIG3-210ENST00000588109 C1QBPQ07021 282 aaKnown RBP10.79□□□□□ -0.68
LIG3-210ENST00000588109 CSRNP3Q8WYN3 585 aa10.79□□□□□ -0.68
LIG3-210ENST00000588109 SAMD1Q6SPF0 538 aaPredicted RBP10.74□□□□□ -0.69
LIG3-210ENST00000588109 APLP2Q06481 763 aa10.73□□□□□ -0.69
LIG3-210ENST00000588109 CACNB1Q02641 598 aaPredicted RBP10.7□□□□□ -0.7
LIG3-210ENST00000588109 CAPN15O75808 1086 aa10.6□□□□□ -0.71
LIG3-210ENST00000588109 ATXN8OSP0DMR3 200 aa10.57□□□□□ -0.72
LIG3-210ENST00000588109 SPINK5Q9NQ38 1064 aaPredicted RBP10.54□□□□□ -0.72
LIG3-210ENST00000588109 TRHP20396 242 aaPredicted RBP10.53□□□□□ -0.72
LIG3-210ENST00000588109 ZNF219Q9P2Y4 722 aaPredicted RBP10.52□□□□□ -0.73
LIG3-210ENST00000588109 ATF5Q9Y2D1 282 aaPredicted RBP10.44□□□□□ -0.74
LIG3-210ENST00000588109 ABCC9O60706 1549 aa10.41□□□□□ -0.74
LIG3-210ENST00000588109 ABCB7O75027 752 aa10.34□□□□□ -0.75
LIG3-210ENST00000588109 DSG3P32926 999 aa10.34□□□□□ -0.75
LIG3-210ENST00000588109 POLA2Q14181 598 aa10.33□□□□□ -0.76
LIG3-210ENST00000588109 ZCCHC6Q5VYS8 1495 aaKnown RBP10.29□□□□□ -0.76
LIG3-210ENST00000588109 DCAF8L2P0C7V8 631 aa10.26□□□□□ -0.77
LIG3-210ENST00000588109 ZBTB12Q9Y330 459 aaPredicted RBP10.19□□□□□ -0.78
LIG3-210ENST00000588109 FBLN2P98095 1184 aa10.16□□□□□ -0.78
LIG3-210ENST00000588109 DCAF1Q9Y4B6 1507 aa10.16□□□□□ -0.78
LIG3-210ENST00000588109 NACADO15069 1562 aa10.13□□□□□ -0.79
LIG3-210ENST00000588109 MYO15BQ96JP2 1530 aa10.11□□□□□ -0.79
LIG3-210ENST00000588109 RB1CC1Q8TDY2 1594 aa10.09□□□□□ -0.79
LIG3-210ENST00000588109 MKRN4PQ13434 485 aaPredicted RBP9.98□□□□□ -0.81
LIG3-210ENST00000588109 OSCARQ8IYS5 282 aa9.94□□□□□ -0.82
LIG3-210ENST00000588109 RBM42Q9BTD8 480 aaKnown RBP9.94□□□□□ -0.82
LIG3-210ENST00000588109 SCRIBQ14160 1630 aa9.93□□□□□ -0.82
LIG3-210ENST00000588109 SHROOM4Q9ULL8 1493 aa9.91□□□□□ -0.82
LIG3-210ENST00000588109 ZNF692Q9BU19 519 aaPredicted RBP9.88□□□□□ -0.83
LIG3-210ENST00000588109 SPDYE2BA6NHP3 402 aa9.87□□□□□ -0.83
LIG3-210ENST00000588109 SPDYE6P0CI01 402 aa9.87□□□□□ -0.83
LIG3-210ENST00000588109 SPDYE2Q495Y8 402 aa9.87□□□□□ -0.83
LIG3-210ENST00000588109 UNC13AQ9UPW8 1703 aa9.86□□□□□ -0.83
LIG3-210ENST00000588109 SPDYE4A6NLX3 237 aa9.84□□□□□ -0.83
LIG3-210ENST00000588109 FKBP8Q14318 412 aa9.82□□□□□ -0.84
LIG3-210ENST00000588109 AKT1S1Q96B36 256 aa9.78□□□□□ -0.84
LIG3-210ENST00000588109 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIG3-210ENST00000588109 BICRAQ9NZM4 1560 aa9.75□□□□□ -0.85
LIG3-210ENST00000588109 SSUH2Q9Y2M2 353 aa9.73□□□□□ -0.85
LIG3-210ENST00000588109 REM2Q8IYK8 340 aaPredicted RBP9.66□□□□□ -0.86
LIG3-210ENST00000588109 SPDYE1Q8NFV5 336 aaPredicted RBP9.62□□□□□ -0.87
LIG3-210ENST00000588109 CLEC11AQ9Y240 323 aa9.61□□□□□ -0.87
LIG3-210ENST00000588109 STAG3Q9UJ98 1225 aa9.6□□□□□ -0.87
LIG3-210ENST00000588109 PROM2Q8N271 834 aa9.56□□□□□ -0.88
LIG3-210ENST00000588109 CECR2Q9BXF3 1484 aa9.55□□□□□ -0.88
LIG3-210ENST00000588109 FBXO3Q9UK99 471 aa9.54□□□□□ -0.88
LIG3-210ENST00000588109 BAZ1AQ9NRL2 1556 aaPredicted RBP9.53□□□□□ -0.88
LIG3-210ENST00000588109 PITPNM1O00562 1244 aa9.52□□□□□ -0.89
LIG3-210ENST00000588109 PRR29P0C7W0 189 aa9.51□□□□□ -0.89
LIG3-210ENST00000588109 EIF4G1Q04637 1599 aaKnown RBP9.5□□□□□ -0.89
LIG3-210ENST00000588109 SMARCA4P51532 1647 aa9.5□□□□□ -0.89
LIG3-210ENST00000588109 CHRDL2Q6WN34 429 aa9.49□□□□□ -0.89
LIG3-210ENST00000588109 MROH2BQ7Z745 1585 aa9.48□□□□□ -0.89
LIG3-210ENST00000588109 RSF1Q96T23 1441 aaPredicted RBP9.46□□□□□ -0.9
LIG3-210ENST00000588109 SUPT5HO00267 1087 aaKnown RBP9.45□□□□□ -0.9
LIG3-210ENST00000588109 PLEKHG5O94827 1062 aa9.43□□□□□ -0.9
LIG3-210ENST00000588109 CC2D2AQ9P2K1 1620 aa9.41□□□□□ -0.9
LIG3-210ENST00000588109 WIZO95785 1651 aa9.4□□□□□ -0.9
LIG3-210ENST00000588109 MIER1Q8N108 512 aa9.4□□□□□ -0.9
LIG3-210ENST00000588109 SMARCA2P51531 1590 aa9.4□□□□□ -0.9
LIG3-210ENST00000588109 PLCD3Q8N3E9 789 aa9.38□□□□□ -0.91
LIG3-210ENST00000588109 ATAD2BQ9ULI0 1458 aa9.38□□□□□ -0.91
LIG3-210ENST00000588109 PEG3Q9GZU2 1588 aa9.37□□□□□ -0.91
LIG3-210ENST00000588109 FXR2P51116 673 aaKnown RBP eCLIP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms