RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RBM19Q9Y4C8 960 aaKnown RBP7.65□□□□□ -1.19
LIMA1-212ENST00000552491 CCDC18Q5T9S5 1454 aa7.64□□□□□ -1.19
LIMA1-212ENST00000552491 KDM5BQ9UGL1 1544 aa7.64□□□□□ -1.19
LIMA1-212ENST00000552491 AQRO60306 1485 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMA1-212ENST00000552491 FANCD2Q9BXW9 1451 aa7.63□□□□□ -1.19
LIMA1-212ENST00000552491 LRRIQ1Q96JM4 1722 aa7.63□□□□□ -1.19
LIMA1-212ENST00000552491 SNAPC4Q5SXM2 1469 aa7.63□□□□□ -1.19
LIMA1-212ENST00000552491 TONSLQ96HA7 1378 aa7.63□□□□□ -1.19
LIMA1-212ENST00000552491 EFCAB5A4FU69 1503 aa7.63□□□□□ -1.19
LIMA1-212ENST00000552491 ABCA10Q8WWZ4 1543 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 POLA1P09884 1462 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-212ENST00000552491 PTPN23Q9H3S7 1636 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 HFM1A2PYH4 1435 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 NEFLP07196 543 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 UACAQ9BZF9 1416 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 CTTNBP2Q8WZ74 1663 aa7.62□□□□□ -1.19
LIMA1-212ENST00000552491 PRR29P0C7W0 189 aa7.61□□□□□ -1.19
LIMA1-212ENST00000552491 NAIPQ13075 1403 aa7.61□□□□□ -1.19
LIMA1-212ENST00000552491 DNMBPQ6XZF7 1577 aa7.61□□□□□ -1.19
LIMA1-212ENST00000552491 TOPBP1Q92547 1522 aa7.6□□□□□ -1.19
LIMA1-212ENST00000552491 MTUS2Q5JR59 1369 aa7.6□□□□□ -1.19
LIMA1-212ENST00000552491 CD44P16070 742 aaKnown RBP7.59□□□□□ -1.19
LIMA1-212ENST00000552491 NESP48681 1621 aa7.59□□□□□ -1.19
LIMA1-212ENST00000552491 NCOA2Q15596 1464 aa7.59□□□□□ -1.19
LIMA1-212ENST00000552491 IRX6P78412 446 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-212ENST00000552491 FMN1Q68DA7 1419 aa7.59□□□□□ -1.19
LIMA1-212ENST00000552491 CUL7Q14999 1698 aa7.59□□□□□ -1.19
LIMA1-212ENST00000552491 DENND4BO75064 1496 aaPredicted RBP7.59□□□□□ -1.2
LIMA1-212ENST00000552491 WASHC2AQ641Q2 1341 aa7.58□□□□□ -1.2
LIMA1-212ENST00000552491 MYOM3Q5VTT5 1437 aa7.57□□□□□ -1.2
LIMA1-212ENST00000552491 HNRNPUQ00839 825 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-212ENST00000552491 SAMD9Q5K651 1589 aa7.57□□□□□ -1.2
LIMA1-212ENST00000552491 CCDC184Q52MB2 194 aa7.57□□□□□ -1.2
LIMA1-212ENST00000552491 GRIN2BQ13224 1484 aa7.57□□□□□ -1.2
LIMA1-212ENST00000552491 MAGI3Q5TCQ9 1506 aa7.57□□□□□ -1.2
LIMA1-212ENST00000552491 HSPA5P11021 654 aaKnown RBP7.56□□□□□ -1.2
LIMA1-212ENST00000552491 RRP7BPQ9NSQ0 103 aa7.56□□□□□ -1.2
LIMA1-212ENST00000552491 KDM6BO15054 1643 aa7.56□□□□□ -1.2
LIMA1-212ENST00000552491 CHIC2Q9UKJ5 165 aa7.55□□□□□ -1.2
LIMA1-212ENST00000552491 TDRD9Q8NDG6 1382 aaKnown RBP7.55□□□□□ -1.2
LIMA1-212ENST00000552491 C11orf95C9JLR9 678 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-212ENST00000552491 UGGT2Q9NYU1 1516 aa7.54□□□□□ -1.2
LIMA1-212ENST00000552491 SUPT6HQ7KZ85 1726 aaKnown RBP7.54□□□□□ -1.2
LIMA1-212ENST00000552491 BCL11AQ9H165 835 aa7.54□□□□□ -1.2
LIMA1-212ENST00000552491 FARP1Q9Y4F1 1045 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-212ENST00000552491 ARHGEF11O15085 1522 aa7.54□□□□□ -1.2
LIMA1-212ENST00000552491 URB2Q14146 1524 aaKnown RBP7.54□□□□□ -1.2
LIMA1-212ENST00000552491 EHBP1L1Q8N3D4 1523 aa7.53□□□□□ -1.2
LIMA1-212ENST00000552491 ABCA5Q8WWZ7 1642 aa7.52□□□□□ -1.2
LIMA1-212ENST00000552491 GCC2Q8IWJ2 1684 aa7.52□□□□□ -1.21
LIMA1-212ENST00000552491 HECW1Q76N89 1606 aa7.52□□□□□ -1.21
LIMA1-212ENST00000552491 THOC2Q8NI27 1593 aaKnown RBP7.51□□□□□ -1.21
LIMA1-212ENST00000552491 L3MBTL2Q969R5 705 aa7.51□□□□□ -1.21
LIMA1-212ENST00000552491 DCBLD2Q96PD2 775 aa7.51□□□□□ -1.21
LIMA1-212ENST00000552491 TCOF1Q13428 1488 aaKnown RBP7.51□□□□□ -1.21
LIMA1-212ENST00000552491 GAPVD1Q14C86 1478 aa7.51□□□□□ -1.21
LIMA1-212ENST00000552491 CNTLNQ9NXG0 1405 aa7.51□□□□□ -1.21
LIMA1-212ENST00000552491 EIF4G2P78344 907 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIMA1-212ENST00000552491 MPHOSPH9Q99550 1183 aa7.5□□□□□ -1.21
LIMA1-212ENST00000552491 FANCIQ9NVI1 1328 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 NCOA1Q15788 1441 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 NBPF8Q3BBV2 869 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 PRKRIP1Q9H875 184 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-212ENST00000552491 LAMC3Q9Y6N6 1575 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 FAM9BQ8IZU0 186 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 CDK11AQ9UQ88 783 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-212ENST00000552491 CCDC7Q96M83 1385 aa7.49□□□□□ -1.21
LIMA1-212ENST00000552491 CDK13Q14004 1512 aaKnown RBP7.48□□□□□ -1.21
LIMA1-212ENST00000552491 ARID3CA6NKF2 412 aa7.48□□□□□ -1.21
LIMA1-212ENST00000552491 AKNAQ7Z591 1439 aa7.48□□□□□ -1.21
LIMA1-212ENST00000552491 EPRSP07814 1512 aaKnown RBP7.47□□□□□ -1.21
LIMA1-212ENST00000552491 B4GALNT3Q6L9W6 998 aa7.47□□□□□ -1.21
LIMA1-212ENST00000552491 PPP4R2Q9NY27 417 aa7.47□□□□□ -1.21
LIMA1-212ENST00000552491 ANKRD30BQ9BXX2 1392 aa7.46□□□□□ -1.21
LIMA1-212ENST00000552491 ERICH6BQ5W0A0 696 aa7.46□□□□□ -1.21
LIMA1-212ENST00000552491 MRS2Q9HD23 443 aa7.46□□□□□ -1.21
LIMA1-212ENST00000552491 KIF21AQ7Z4S6 1674 aa7.46□□□□□ -1.21
LIMA1-212ENST00000552491 KIF7Q2M1P5 1343 aa7.46□□□□□ -1.22
LIMA1-212ENST00000552491 TEX14Q8IWB6 1497 aa7.46□□□□□ -1.22
LIMA1-212ENST00000552491 SPATA31E1Q6ZUB1 1445 aa7.45□□□□□ -1.22
LIMA1-212ENST00000552491 OTUD5Q96G74 571 aa7.45□□□□□ -1.22
LIMA1-212ENST00000552491 RPRD2Q5VT52 1461 aaKnown RBP7.45□□□□□ -1.22
LIMA1-212ENST00000552491 ZBED9Q6R2W3 1325 aa7.45□□□□□ -1.22
LIMA1-212ENST00000552491 ZNF644Q9H582 1327 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-212ENST00000552491 TARBP1Q13395 1621 aaKnown RBP7.44□□□□□ -1.22
LIMA1-212ENST00000552491 MIA2Q96PC5 1412 aa7.44□□□□□ -1.22
LIMA1-212ENST00000552491 CLCN6P51797 869 aa7.44□□□□□ -1.22
LIMA1-212ENST00000552491 WDR62O43379 1518 aa7.44□□□□□ -1.22
LIMA1-212ENST00000552491 POTEB2H3BUK9 544 aa7.44□□□□□ -1.22
LIMA1-212ENST00000552491 ZRANB1Q9UGI0 708 aa7.43□□□□□ -1.22
LIMA1-212ENST00000552491 ABCC5O15440 1437 aa7.43□□□□□ -1.22
LIMA1-212ENST00000552491 DAPK1P53355 1430 aa7.43□□□□□ -1.22
LIMA1-212ENST00000552491 IQGAP2Q13576 1575 aa7.43□□□□□ -1.22
LIMA1-212ENST00000552491 POLR1AO95602 1720 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-212ENST00000552491 GALR2O43603 387 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-212ENST00000552491 SENP3-EIF4A1A0A087X0R7 540 aa7.42□□□□□ -1.22
LIMA1-212ENST00000552491 ZNF579Q8NAF0 562 aaKnown RBP7.42□□□□□ -1.22
LIMA1-212ENST00000552491 ERCC6Q03468 1493 aa7.42□□□□□ -1.22
LIMA1-212ENST00000552491 CNGB1Q14028 1251 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-212ENST00000552491 BCORL1Q5H9F3 1711 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms