RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 KIF21BO75037 1637 aa9.88□□□□□ -0.83
SYNE1-239ENST00000545694 SOGA1O94964 1423 aa9.88□□□□□ -0.83
SYNE1-239ENST00000545694 ST18O60284 1047 aa9.87□□□□□ -0.83
SYNE1-239ENST00000545694 FAM9AQ8IZU1 332 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-239ENST00000545694 FANCD2Q9BXW9 1451 aa9.86□□□□□ -0.83
SYNE1-239ENST00000545694 CEP164Q9UPV0 1460 aa9.86□□□□□ -0.83
SYNE1-239ENST00000545694 PDS5BQ9NTI5 1447 aa9.86□□□□□ -0.83
SYNE1-239ENST00000545694 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.86□□□□□ -0.83
SYNE1-239ENST00000545694 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.86□□□□□ -0.83
SYNE1-239ENST00000545694 GOLGA3Q08378 1498 aa9.85□□□□□ -0.83
SYNE1-239ENST00000545694 PDAP1Q13442 181 aaKnown RBP9.85□□□□□ -0.83
SYNE1-239ENST00000545694 TNIKQ9UKE5 1360 aa9.85□□□□□ -0.83
SYNE1-239ENST00000545694 DNMBPQ6XZF7 1577 aa9.84□□□□□ -0.83
SYNE1-239ENST00000545694 KIF27Q86VH2 1401 aa9.83□□□□□ -0.84
SYNE1-239ENST00000545694 ERICH3Q5RHP9 1530 aa9.82□□□□□ -0.84
SYNE1-239ENST00000545694 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
SYNE1-239ENST00000545694 DPY19L2Q6NUT2 758 aa9.81□□□□□ -0.84
SYNE1-239ENST00000545694 CDAN1Q8IWY9 1227 aa9.8□□□□□ -0.84
SYNE1-239ENST00000545694 L3MBTL3Q96JM7 780 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-239ENST00000545694 RUSC2Q8N2Y8 1516 aa9.79□□□□□ -0.84
SYNE1-239ENST00000545694 C3orf67Q6ZVT6 689 aa9.79□□□□□ -0.84
SYNE1-239ENST00000545694 TOPBP1Q92547 1522 aa9.77□□□□□ -0.84
SYNE1-239ENST00000545694 FGD5Q6ZNL6 1462 aa9.77□□□□□ -0.85
SYNE1-239ENST00000545694 PRXQ9BXM0 1461 aa9.77□□□□□ -0.85
SYNE1-239ENST00000545694 NESP48681 1621 aa9.76□□□□□ -0.85
SYNE1-239ENST00000545694 ABCA10Q8WWZ4 1543 aa9.76□□□□□ -0.85
SYNE1-239ENST00000545694 SNPHO15079 494 aa9.75□□□□□ -0.85
SYNE1-239ENST00000545694 CEP162Q5TB80 1403 aa9.74□□□□□ -0.85
SYNE1-239ENST00000545694 ILDR1Q86SU0 546 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-239ENST00000545694 MARVELD3Q96A59 401 aa9.74□□□□□ -0.85
SYNE1-239ENST00000545694 KIF21AQ7Z4S6 1674 aa9.74□□□□□ -0.85
SYNE1-239ENST00000545694 UBTFP17480 764 aaKnown RBP9.73□□□□□ -0.85
SYNE1-239ENST00000545694 CUX2O14529 1486 aa9.72□□□□□ -0.85
SYNE1-239ENST00000545694 POLA1P09884 1462 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-239ENST00000545694 URB2Q14146 1524 aaKnown RBP9.71□□□□□ -0.86
SYNE1-239ENST00000545694 WDR97A6NE52 1622 aa9.71□□□□□ -0.86
SYNE1-239ENST00000545694 EFCAB3Q8N7B9 438 aa9.7□□□□□ -0.86
SYNE1-239ENST00000545694 BOLA1Q9Y3E2 137 aa9.7□□□□□ -0.86
SYNE1-239ENST00000545694 RAPGEF2Q9Y4G8 1499 aa9.7□□□□□ -0.86
SYNE1-239ENST00000545694 CUL7Q14999 1698 aa9.7□□□□□ -0.86
SYNE1-239ENST00000545694 IGF1RP08069 1367 aa9.69□□□□□ -0.86
SYNE1-239ENST00000545694 TRIM26Q12899 539 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-239ENST00000545694 TMEM121BQ9BXQ6 578 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-239ENST00000545694 MRC2Q9UBG0 1479 aa9.69□□□□□ -0.86
SYNE1-239ENST00000545694 G3V3G9 751 aa9.68□□□□□ -0.86
SYNE1-239ENST00000545694 CLIP1P30622 1438 aa9.66□□□□□ -0.86
SYNE1-239ENST00000545694 CARMIL1Q5VZK9 1371 aa9.65□□□□□ -0.86
SYNE1-239ENST00000545694 ABCA5Q8WWZ7 1642 aa9.65□□□□□ -0.86
SYNE1-239ENST00000545694 RIOK3O14730 519 aaKnown RBP9.65□□□□□ -0.86
SYNE1-239ENST00000545694 RNF25Q96BH1 459 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-239ENST00000545694 WDR62O43379 1518 aa9.65□□□□□ -0.86
SYNE1-239ENST00000545694 TARBP1Q13395 1621 aaKnown RBP9.64□□□□□ -0.87
SYNE1-239ENST00000545694 EMP3P54852 163 aa9.63□□□□□ -0.87
SYNE1-239ENST00000545694 RAD54L2Q9Y4B4 1467 aa9.63□□□□□ -0.87
SYNE1-239ENST00000545694 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-239ENST00000545694 ZFP91Q96JP5 570 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-239ENST00000545694 VPS8Q8N3P4 1428 aa9.62□□□□□ -0.87
SYNE1-239ENST00000545694 GAPVD1Q14C86 1478 aa9.61□□□□□ -0.87
SYNE1-239ENST00000545694 IFT140Q96RY7 1462 aa9.61□□□□□ -0.87
SYNE1-239ENST00000545694 POTEB3A0JP26 581 aa9.59□□□□□ -0.87
SYNE1-239ENST00000545694 POTEBQ6S5H4 581 aa9.59□□□□□ -0.87
SYNE1-239ENST00000545694 PCGF6Q9BYE7 350 aa9.59□□□□□ -0.87
SYNE1-239ENST00000545694 ERCC6Q03468 1493 aa9.59□□□□□ -0.87
SYNE1-239ENST00000545694 CTTNBP2Q8WZ74 1663 aa9.58□□□□□ -0.88
SYNE1-239ENST00000545694 FAM205CA6NFA0 338 aa9.58□□□□□ -0.88
SYNE1-239ENST00000545694 VGFO15240 615 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-239ENST00000545694 HOXB3P14651 431 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-239ENST00000545694 PHF8Q9UPP1 1060 aa9.57□□□□□ -0.88
SYNE1-239ENST00000545694 THOC2Q8NI27 1593 aaKnown RBP9.57□□□□□ -0.88
SYNE1-239ENST00000545694 PBRM1Q86U86 1689 aa9.57□□□□□ -0.88
SYNE1-239ENST00000545694 EFCAB5A4FU69 1503 aa9.56□□□□□ -0.88
SYNE1-239ENST00000545694 SOX12O15370 315 aa9.56□□□□□ -0.88
SYNE1-239ENST00000545694 SPNS2Q8IVW8 549 aa9.56□□□□□ -0.88
SYNE1-239ENST00000545694 MS4A4AQ96JQ5 239 aa9.56□□□□□ -0.88
SYNE1-239ENST00000545694 HS3ST6Q96QI5 342 aa9.56□□□□□ -0.88
SYNE1-239ENST00000545694 MICALL2Q8IY33 904 aa9.55□□□□□ -0.88
SYNE1-239ENST00000545694 GRIN2BQ13224 1484 aa9.54□□□□□ -0.88
SYNE1-239ENST00000545694 ZNF710Q8N1W2 664 aa9.54□□□□□ -0.88
SYNE1-239ENST00000545694 FHAD1B1AJZ9 1412 aa9.54□□□□□ -0.88
SYNE1-239ENST00000545694 TMEM92Q6UXU6 159 aa9.53□□□□□ -0.88
SYNE1-239ENST00000545694 TDRD9Q8NDG6 1382 aaKnown RBP9.52□□□□□ -0.88
SYNE1-239ENST00000545694 MAP3K1Q13233 1512 aa9.52□□□□□ -0.88
SYNE1-239ENST00000545694 MMRN1Q13201 1228 aa9.52□□□□□ -0.89
SYNE1-239ENST00000545694 ARAP1Q96P48 1450 aa9.52□□□□□ -0.89
SYNE1-239ENST00000545694 ARHGAP35Q9NRY4 1499 aa9.52□□□□□ -0.89
SYNE1-239ENST00000545694 BCL11BQ9C0K0 894 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-239ENST00000545694 ADAMTS12P58397 1594 aa9.5□□□□□ -0.89
SYNE1-239ENST00000545694 DOK7Q18PE1 504 aa9.5□□□□□ -0.89
SYNE1-239ENST00000545694 KRTAP3-3Q9BYR6 98 aa9.49□□□□□ -0.89
SYNE1-239ENST00000545694 KRTAP3-2Q9BYR7 98 aa9.49□□□□□ -0.89
SYNE1-239ENST00000545694 STK24Q9Y6E0 443 aa9.49□□□□□ -0.89
SYNE1-239ENST00000545694 AQRO60306 1485 aaKnown RBP eCLIP9.48□□□□□ -0.89
SYNE1-239ENST00000545694 MAGI1Q96QZ7 1491 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-239ENST00000545694 HOXB1P14653 301 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-239ENST00000545694 ECM2O94769 699 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-239ENST00000545694 EIF4G3O43432 1585 aaKnown RBP9.46□□□□□ -0.89
SYNE1-239ENST00000545694 SAMD9Q5K651 1589 aa9.46□□□□□ -0.89
SYNE1-239ENST00000545694 NLRP6P59044 892 aa9.46□□□□□ -0.9
SYNE1-239ENST00000545694 FMN1Q68DA7 1419 aa9.46□□□□□ -0.9
SYNE1-239ENST00000545694 HRCP23327 699 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms