RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 AEBP2Q6ZN18 517 aaPredicted RBP21.45■■□□□ 1.02
SYNE1-239ENST00000545694 CHIC1Q5VXU3 224 aa20.3■□□□□ 0.84
SYNE1-239ENST00000545694 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
SYNE1-239ENST00000545694 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
SYNE1-239ENST00000545694 FOXD1Q16676 465 aa17.05■□□□□ 0.32
SYNE1-239ENST00000545694 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
SYNE1-239ENST00000545694 PPP6R1Q9UPN7 881 aa15.97■□□□□ 0.15
SYNE1-239ENST00000545694 ADRA2BP18089 450 aa15.93■□□□□ 0.14
SYNE1-239ENST00000545694 PIAS4Q8N2W9 510 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-239ENST00000545694 MSH5O43196 834 aa15.9■□□□□ 0.14
SYNE1-239ENST00000545694 POTEDQ86YR6 584 aa15.62■□□□□ 0.09
SYNE1-239ENST00000545694 MAPK8IP2Q13387 824 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-239ENST00000545694 SCAF1Q9H7N4 1312 aaKnown RBP14.48□□□□□ -0.09
SYNE1-239ENST00000545694 DMRT2Q9Y5R5 561 aa14.47□□□□□ -0.09
SYNE1-239ENST00000545694 PPP4R3CPQ6ZMV5 832 aa14.24□□□□□ -0.13
SYNE1-239ENST00000545694 DCAF8L1A6NGE4 600 aa13.97□□□□□ -0.17
SYNE1-239ENST00000545694 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
SYNE1-239ENST00000545694 HOXD11P31277 338 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-239ENST00000545694 RNF216Q9NWF9 866 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-239ENST00000545694 NISCHQ9Y2I1 1504 aa13.76□□□□□ -0.21
SYNE1-239ENST00000545694 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
SYNE1-239ENST00000545694 NCBP3Q53F19 620 aaKnown RBP13.65□□□□□ -0.22
SYNE1-239ENST00000545694 RNF39Q9H2S5 420 aa13.6□□□□□ -0.23
SYNE1-239ENST00000545694 NPM3O75607 178 aaKnown RBP13.48□□□□□ -0.25
SYNE1-239ENST00000545694 C1QBPQ07021 282 aaKnown RBP13.37□□□□□ -0.27
SYNE1-239ENST00000545694 DNAJC5BQ9UF47 199 aa13.36□□□□□ -0.27
SYNE1-239ENST00000545694 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE1-239ENST00000545694 KCNA4P22459 653 aa13.23□□□□□ -0.29
SYNE1-239ENST00000545694 U3KPZ7 1027 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-239ENST00000545694 SLC4A2P04920 1241 aa12.89□□□□□ -0.35
SYNE1-239ENST00000545694 SPINK5Q9NQ38 1064 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-239ENST00000545694 CAPN15O75808 1086 aa12.84□□□□□ -0.35
SYNE1-239ENST00000545694 DSG3P32926 999 aa12.74□□□□□ -0.37
SYNE1-239ENST00000545694 TRHP20396 242 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-239ENST00000545694 APLP2Q06481 763 aa12.58□□□□□ -0.4
SYNE1-239ENST00000545694 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-239ENST00000545694 ABCB7O75027 752 aa12.57□□□□□ -0.4
SYNE1-239ENST00000545694 HNRNPUL2Q1KMD3 747 aaKnown RBP12.57□□□□□ -0.4
SYNE1-239ENST00000545694 ZNF219Q9P2Y4 722 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-239ENST00000545694 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-239ENST00000545694 SLC4A1APQ9BWU0 796 aaKnown RBP12.47□□□□□ -0.41
SYNE1-239ENST00000545694 MYCNP04198 464 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-239ENST00000545694 FOXD4L1Q9NU39 408 aa12.3□□□□□ -0.44
SYNE1-239ENST00000545694 POLA2Q14181 598 aa12.29□□□□□ -0.44
SYNE1-239ENST00000545694 POTEHQ6S545 545 aa12.23□□□□□ -0.45
SYNE1-239ENST00000545694 ATF5Q9Y2D1 282 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-239ENST00000545694 ZBTB22O15209 634 aa12.17□□□□□ -0.46
SYNE1-239ENST00000545694 RBM42Q9BTD8 480 aaKnown RBP12.1□□□□□ -0.47
SYNE1-239ENST00000545694 CCDC180Q9P1Z9 1646 aa12.06□□□□□ -0.48
SYNE1-239ENST00000545694 ZBTB12Q9Y330 459 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-239ENST00000545694 CHRDL2Q6WN34 429 aa11.9□□□□□ -0.5
SYNE1-239ENST00000545694 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
SYNE1-239ENST00000545694 OSCARQ8IYS5 282 aa11.89□□□□□ -0.51
SYNE1-239ENST00000545694 AKT1S1Q96B36 256 aa11.85□□□□□ -0.51
SYNE1-239ENST00000545694 REM2Q8IYK8 340 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-239ENST00000545694 FBLN2P98095 1184 aa11.69□□□□□ -0.54
SYNE1-239ENST00000545694 PITPNM1O00562 1244 aa11.65□□□□□ -0.54
SYNE1-239ENST00000545694 MKRN4PQ13434 485 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-239ENST00000545694 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
SYNE1-239ENST00000545694 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
SYNE1-239ENST00000545694 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
SYNE1-239ENST00000545694 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
SYNE1-239ENST00000545694 CSRNP3Q8WYN3 585 aa11.58□□□□□ -0.56
SYNE1-239ENST00000545694 ZCCHC6Q5VYS8 1495 aaKnown RBP11.57□□□□□ -0.56
SYNE1-239ENST00000545694 FXR2P51116 673 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE1-239ENST00000545694 ZNF692Q9BU19 519 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-239ENST00000545694 DCAF1Q9Y4B6 1507 aa11.49□□□□□ -0.57
SYNE1-239ENST00000545694 EHMT2Q96KQ7 1210 aa11.46□□□□□ -0.57
SYNE1-239ENST00000545694 CLEC11AQ9Y240 323 aa11.46□□□□□ -0.57
SYNE1-239ENST00000545694 HAX1O00165 279 aa11.45□□□□□ -0.58
SYNE1-239ENST00000545694 SP7Q8TDD2 431 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-239ENST00000545694 SSUH2Q9Y2M2 353 aa11.44□□□□□ -0.58
SYNE1-239ENST00000545694 SPDYE1Q8NFV5 336 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-239ENST00000545694 PRKAR2AP13861 404 aaKnown RBP11.36□□□□□ -0.59
SYNE1-239ENST00000545694 MYO15BQ96JP2 1530 aa11.35□□□□□ -0.59
SYNE1-239ENST00000545694 PABPN1Q86U42 306 aaKnown RBP eCLIP11.34□□□□□ -0.59
SYNE1-239ENST00000545694 EVX2Q03828 476 aa11.33□□□□□ -0.6
SYNE1-239ENST00000545694 CHADLQ6NUI6 762 aa11.26□□□□□ -0.61
SYNE1-239ENST00000545694 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
SYNE1-239ENST00000545694 NACADO15069 1562 aa11.2□□□□□ -0.62
SYNE1-239ENST00000545694 DCAF8L2P0C7V8 631 aa11.17□□□□□ -0.62
SYNE1-239ENST00000545694 C19orf67A6NJJ6 358 aa11.16□□□□□ -0.62
SYNE1-239ENST00000545694 ABCC9O60706 1549 aa11.11□□□□□ -0.63
SYNE1-239ENST00000545694 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
SYNE1-239ENST00000545694 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
SYNE1-239ENST00000545694 RB1CC1Q8TDY2 1594 aa11.05□□□□□ -0.64
SYNE1-239ENST00000545694 FARP1Q9Y4F1 1045 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-239ENST00000545694 GABBR2O75899 941 aa11.04□□□□□ -0.64
SYNE1-239ENST00000545694 CD44P16070 742 aaKnown RBP10.99□□□□□ -0.65
SYNE1-239ENST00000545694 CREBZFQ9NS37 354 aa10.96□□□□□ -0.65
SYNE1-239ENST00000545694 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.65
SYNE1-239ENST00000545694 SCRIBQ14160 1630 aa10.92□□□□□ -0.66
SYNE1-239ENST00000545694 ZRANB1Q9UGI0 708 aa10.85□□□□□ -0.67
SYNE1-239ENST00000545694 POTEIP0CG38 1075 aa10.81□□□□□ -0.68
SYNE1-239ENST00000545694 UNC13AQ9UPW8 1703 aa10.78□□□□□ -0.68
SYNE1-239ENST00000545694 ZNF579Q8NAF0 562 aaKnown RBP10.77□□□□□ -0.69
SYNE1-239ENST00000545694 LHX8Q68G74 356 aa10.76□□□□□ -0.69
SYNE1-239ENST00000545694 SUPT5HO00267 1087 aaKnown RBP10.75□□□□□ -0.69
SYNE1-239ENST00000545694 MNX1P50219 401 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-239ENST00000545694 CLCN6P51797 869 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms