RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 P3H3Q8IVL6 736 aa18.07■□□□□ 0.48
USF1-208ENST00000528768 TTC37Q6PGP7 1564 aa18.07■□□□□ 0.48
USF1-208ENST00000528768 PLEKHD1A6NEE1 506 aa18.06■□□□□ 0.48
USF1-208ENST00000528768 YEATS2Q9ULM3 1422 aa18.06■□□□□ 0.48
USF1-208ENST00000528768 SAMD9Q5K651 1589 aa18.05■□□□□ 0.48
USF1-208ENST00000528768 PLPPR3Q6T4P5 718 aa18.04■□□□□ 0.48
USF1-208ENST00000528768 NUP153P49790 1475 aaKnown RBP18.03■□□□□ 0.48
USF1-208ENST00000528768 FER1L4A9Z1Z3 1794 aa18.03■□□□□ 0.48
USF1-208ENST00000528768 PREX1Q8TCU6 1659 aa18.03■□□□□ 0.48
USF1-208ENST00000528768 CLIP1P30622 1438 aa18.02■□□□□ 0.48
USF1-208ENST00000528768 SPATA31D1Q6ZQQ2 1576 aa18■□□□□ 0.47
USF1-208ENST00000528768 ARHGEF12Q9NZN5 1544 aa17.98■□□□□ 0.47
USF1-208ENST00000528768 MLECQ14165 292 aa17.98■□□□□ 0.47
USF1-208ENST00000528768 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.98■□□□□ 0.47
USF1-208ENST00000528768 ATP10AO60312 1499 aa17.97■□□□□ 0.47
USF1-208ENST00000528768 HECW1Q76N89 1606 aa17.96■□□□□ 0.47
USF1-208ENST00000528768 PTPRTO14522 1441 aa17.95■□□□□ 0.46
USF1-208ENST00000528768 C9orf84Q5VXU9 1444 aa17.95■□□□□ 0.46
USF1-208ENST00000528768 UHRF1BP1Q6BDS2 1440 aa17.95■□□□□ 0.46
USF1-208ENST00000528768 SIGLEC1Q9BZZ2 1709 aa17.95■□□□□ 0.46
USF1-208ENST00000528768 IQSEC2Q5JU85 1478 aa17.95■□□□□ 0.46
USF1-208ENST00000528768 APLP2Q06481 763 aa17.94■□□□□ 0.46
USF1-208ENST00000528768 SCAPERQ9BY12 1400 aa17.93■□□□□ 0.46
USF1-208ENST00000528768 SETD1BQ9UPS6 1966 aaKnown RBP17.93■□□□□ 0.46
USF1-208ENST00000528768 STRCQ7RTU9 1775 aa17.91■□□□□ 0.46
USF1-208ENST00000528768 PLCH2O75038 1416 aa17.91■□□□□ 0.46
USF1-208ENST00000528768 VPS8Q8N3P4 1428 aa17.91■□□□□ 0.46
USF1-208ENST00000528768 PPARGC1BQ86YN6 1023 aaKnown RBP17.91■□□□□ 0.46
USF1-208ENST00000528768 EFCAB2Q5VUJ9 269 aa17.87■□□□□ 0.45
USF1-208ENST00000528768 CEBPAP49715 358 aaPredicted RBP17.86■□□□□ 0.45
USF1-208ENST00000528768 ZNF518AQ6AHZ1 1483 aa17.84■□□□□ 0.45
USF1-208ENST00000528768 LTBP4Q8N2S1 1624 aa17.82■□□□□ 0.44
USF1-208ENST00000528768 ESF1Q9H501 851 aaKnown RBP17.81■□□□□ 0.44
USF1-208ENST00000528768 REREQ9P2R6 1566 aa17.81■□□□□ 0.44
USF1-208ENST00000528768 TRAPPC8Q9Y2L5 1435 aa17.8■□□□□ 0.44
USF1-208ENST00000528768 CDK11AQ9UQ88 783 aaPredicted RBP17.79■□□□□ 0.44
USF1-208ENST00000528768 MYO5CQ9NQX4 1742 aa17.78■□□□□ 0.44
USF1-208ENST00000528768 KDM5CP41229 1560 aa17.78■□□□□ 0.44
USF1-208ENST00000528768 NCOA1Q15788 1441 aa17.77■□□□□ 0.44
USF1-208ENST00000528768 CNTLNQ9NXG0 1405 aa17.76■□□□□ 0.43
USF1-208ENST00000528768 RANGAP1P46060 587 aaPredicted RBP17.76■□□□□ 0.43
USF1-208ENST00000528768 AGLP35573 1532 aa17.76■□□□□ 0.43
USF1-208ENST00000528768 C3P01024 1663 aa17.74■□□□□ 0.43
USF1-208ENST00000528768 CDK13Q14004 1512 aaKnown RBP17.74■□□□□ 0.43
USF1-208ENST00000528768 MYT1LQ9UL68 1186 aa17.74■□□□□ 0.43
USF1-208ENST00000528768 MLH3Q9UHC1 1453 aa17.73■□□□□ 0.43
USF1-208ENST00000528768 DIP2CQ9Y2E4 1556 aa17.73■□□□□ 0.43
USF1-208ENST00000528768 AFAP1Q8N556 730 aa17.72■□□□□ 0.43
USF1-208ENST00000528768 NPATQ14207 1427 aa17.71■□□□□ 0.43
USF1-208ENST00000528768 KIF14Q15058 1648 aa17.7■□□□□ 0.42
USF1-208ENST00000528768 CCER1Q8TC90 406 aaPredicted RBP17.7■□□□□ 0.42
USF1-208ENST00000528768 ARHGAP5Q13017 1502 aa17.7■□□□□ 0.42
USF1-208ENST00000528768 FMN1Q68DA7 1419 aa17.7■□□□□ 0.42
USF1-208ENST00000528768 UBAP1LF5GYI3 381 aa17.69■□□□□ 0.42
USF1-208ENST00000528768 TROQ12816 1431 aaPredicted RBP17.66■□□□□ 0.42
USF1-208ENST00000528768 CAMSAP1Q5T5Y3 1602 aa17.66■□□□□ 0.42
USF1-208ENST00000528768 PKD2Q13563 968 aa17.66■□□□□ 0.42
USF1-208ENST00000528768 ABCA6Q8N139 1617 aa17.65■□□□□ 0.42
USF1-208ENST00000528768 MROH2AA6NES4 1674 aa17.64■□□□□ 0.41
USF1-208ENST00000528768 ATP1B4Q9UN42 357 aaPredicted RBP17.63■□□□□ 0.41
USF1-208ENST00000528768 PLA2R1Q13018 1463 aa17.63■□□□□ 0.41
USF1-208ENST00000528768 ARHGAP35Q9NRY4 1499 aa17.63■□□□□ 0.41
USF1-208ENST00000528768 ZNF335Q9H4Z2 1342 aaPredicted RBP17.61■□□□□ 0.41
USF1-208ENST00000528768 ZMYM3Q14202 1370 aa17.59■□□□□ 0.41
USF1-208ENST00000528768 ABCC1P33527 1531 aa17.58■□□□□ 0.41
USF1-208ENST00000528768 NCKAP5LQ9HCH0 1330 aa17.58■□□□□ 0.4
USF1-208ENST00000528768 TCOF1Q13428 1488 aaKnown RBP17.56■□□□□ 0.4
USF1-208ENST00000528768 CDC42BPBQ9Y5S2 1711 aa17.56■□□□□ 0.4
USF1-208ENST00000528768 ZNF142P52746 1687 aaPredicted RBP17.56■□□□□ 0.4
USF1-208ENST00000528768 MAP3K1Q13233 1512 aa17.56■□□□□ 0.4
USF1-208ENST00000528768 PREX2Q70Z35 1606 aa17.55■□□□□ 0.4
USF1-208ENST00000528768 KIDINS220Q9ULH0 1771 aa17.55■□□□□ 0.4
USF1-208ENST00000528768 ITSN2Q9NZM3 1697 aa17.55■□□□□ 0.4
USF1-208ENST00000528768 TOM1O60784 492 aa17.54■□□□□ 0.4
USF1-208ENST00000528768 PPP6R1Q9UPN7 881 aa17.54■□□□□ 0.4
USF1-208ENST00000528768 MED1Q15648 1581 aaPredicted RBP17.53■□□□□ 0.4
USF1-208ENST00000528768 CEP170BQ9Y4F5 1589 aaPredicted RBP17.52■□□□□ 0.39
USF1-208ENST00000528768 MYO3AQ8NEV4 1616 aa17.51■□□□□ 0.39
USF1-208ENST00000528768 HSPA1LP34931 641 aa17.5■□□□□ 0.39
USF1-208ENST00000528768 CPS1P31327 1500 aa17.5■□□□□ 0.39
USF1-208ENST00000528768 SUPT6HQ7KZ85 1726 aaKnown RBP17.5■□□□□ 0.39
USF1-208ENST00000528768 CCDC18Q5T9S5 1454 aa17.49■□□□□ 0.39
USF1-208ENST00000528768 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
USF1-208ENST00000528768 PTPRKQ15262 1439 aa17.48■□□□□ 0.39
USF1-208ENST00000528768 PHF23Q9BUL5 403 aaPredicted RBP17.48■□□□□ 0.39
USF1-208ENST00000528768 SAMD9LQ8IVG5 1584 aa17.48■□□□□ 0.39
USF1-208ENST00000528768 SPAG9O60271 1321 aaKnown RBP17.47■□□□□ 0.39
USF1-208ENST00000528768 PIP4K2BP78356 416 aa17.45■□□□□ 0.38
USF1-208ENST00000528768 CLTCQ00610 1675 aaKnown RBP17.45■□□□□ 0.38
USF1-208ENST00000528768 A2ML1A8K2U0 1454 aa17.44■□□□□ 0.38
USF1-208ENST00000528768 TIAM1Q13009 1591 aa17.44■□□□□ 0.38
USF1-208ENST00000528768 KANK4Q5T7N3 995 aaPredicted RBP17.43■□□□□ 0.38
USF1-208ENST00000528768 RRBP1Q9P2E9 1410 aaKnown RBP17.43■□□□□ 0.38
USF1-208ENST00000528768 PLXNC1O60486 1568 aa17.43■□□□□ 0.38
USF1-208ENST00000528768 A2MP01023 1474 aa17.43■□□□□ 0.38
USF1-208ENST00000528768 PLEKHH2Q8IVE3 1493 aa17.43■□□□□ 0.38
USF1-208ENST00000528768 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
USF1-208ENST00000528768 ATP7AQ04656 1500 aa17.42■□□□□ 0.38
USF1-208ENST00000528768 CDC42BPAQ5VT25 1732 aa17.41■□□□□ 0.38
USF1-208ENST00000528768 KIAA1107Q9UPP5 1409 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms