RNA–Protein interactions for RNA: ENST00000527683.1

LINC01001-202, Transcript of long intergenic non-protein coding RNA 1001, humanhuman

TSL 1 (best)

Gene LINC01001, Length 683 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01001-202ENST00000527683 AQRO60306 1485 aaKnown RBP eCLIP10.34□□□□□ -0.75
LINC01001-202ENST00000527683 TOPBP1Q92547 1522 aa10.33□□□□□ -0.76
LINC01001-202ENST00000527683 PDCD7Q8N8D1 485 aaKnown RBP10.33□□□□□ -0.76
LINC01001-202ENST00000527683 VGFO15240 615 aaPredicted RBP10.32□□□□□ -0.76
LINC01001-202ENST00000527683 ARHGEF11O15085 1522 aa10.32□□□□□ -0.76
LINC01001-202ENST00000527683 EFCAB3Q8N7B9 438 aa10.31□□□□□ -0.76
LINC01001-202ENST00000527683 DPY19L2Q6NUT2 758 aa10.3□□□□□ -0.76
LINC01001-202ENST00000527683 ABCC8Q09428 1581 aa10.3□□□□□ -0.76
LINC01001-202ENST00000527683 RIMBP3CA6NJZ7 1639 aa10.29□□□□□ -0.76
LINC01001-202ENST00000527683 RIMBP3BA6NNM3 1639 aa10.29□□□□□ -0.76
LINC01001-202ENST00000527683 RIMBP3Q9UFD9 1639 aa10.29□□□□□ -0.76
LINC01001-202ENST00000527683 SEC24BO95487 1268 aa10.29□□□□□ -0.76
LINC01001-202ENST00000527683 OCEL1Q9H607 264 aa10.29□□□□□ -0.76
LINC01001-202ENST00000527683 TDRD9Q8NDG6 1382 aaKnown RBP10.27□□□□□ -0.76
LINC01001-202ENST00000527683 BCL11BQ9C0K0 894 aaPredicted RBP10.26□□□□□ -0.77
LINC01001-202ENST00000527683 SOGA1O94964 1423 aa10.25□□□□□ -0.77
LINC01001-202ENST00000527683 PLCG2P16885 1265 aa10.25□□□□□ -0.77
LINC01001-202ENST00000527683 MKRN3Q13064 507 aaKnown RBP10.25□□□□□ -0.77
LINC01001-202ENST00000527683 CHMP7Q8WUX9 453 aaPredicted RBP10.25□□□□□ -0.77
LINC01001-202ENST00000527683 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.25□□□□□ -0.77
LINC01001-202ENST00000527683 RAD54L2Q9Y4B4 1467 aa10.24□□□□□ -0.77
LINC01001-202ENST00000527683 MS4A4AQ96JQ5 239 aa10.24□□□□□ -0.77
LINC01001-202ENST00000527683 ARAP1Q96P48 1450 aa10.23□□□□□ -0.77
LINC01001-202ENST00000527683 STK24Q9Y6E0 443 aa10.22□□□□□ -0.77
LINC01001-202ENST00000527683 POLA1P09884 1462 aaPredicted RBP10.22□□□□□ -0.77
LINC01001-202ENST00000527683 STK25O00506 426 aa10.21□□□□□ -0.77
LINC01001-202ENST00000527683 GOLGA2Q08379 1002 aa10.21□□□□□ -0.77
LINC01001-202ENST00000527683 RTN4Q9NQC3 1192 aaKnown RBP10.21□□□□□ -0.77
LINC01001-202ENST00000527683 PHF8Q9UPP1 1060 aa10.21□□□□□ -0.77
LINC01001-202ENST00000527683 DNMBPQ6XZF7 1577 aa10.21□□□□□ -0.78
LINC01001-202ENST00000527683 FBXO22Q8NEZ5 403 aa10.19□□□□□ -0.78
LINC01001-202ENST00000527683 TARBP1Q13395 1621 aaKnown RBP10.18□□□□□ -0.78
LINC01001-202ENST00000527683 MFRPQ9BY79 579 aa10.18□□□□□ -0.78
LINC01001-202ENST00000527683 EIF4G3O43432 1585 aaKnown RBP10.18□□□□□ -0.78
LINC01001-202ENST00000527683 SOX12O15370 315 aa10.14□□□□□ -0.79
LINC01001-202ENST00000527683 NKX1-1Q15270 411 aaPredicted RBP10.14□□□□□ -0.79
LINC01001-202ENST00000527683 HS6ST3Q8IZP7 471 aa10.14□□□□□ -0.79
LINC01001-202ENST00000527683 SNAPC4Q5SXM2 1469 aa10.13□□□□□ -0.79
LINC01001-202ENST00000527683 FGD5Q6ZNL6 1462 aa10.12□□□□□ -0.79
LINC01001-202ENST00000527683 CHGAP10645 457 aaKnown RBP10.12□□□□□ -0.79
LINC01001-202ENST00000527683 MAMSTRQ6ZN01 415 aa10.12□□□□□ -0.79
LINC01001-202ENST00000527683 GRIN2BQ13224 1484 aa10.11□□□□□ -0.79
LINC01001-202ENST00000527683 LCE2DQ5TA82 110 aaPredicted RBP10.11□□□□□ -0.79
LINC01001-202ENST00000527683 SCUBE2Q9NQ36 999 aa10.11□□□□□ -0.79
LINC01001-202ENST00000527683 TAOK2Q9UL54 1235 aa10.11□□□□□ -0.79
LINC01001-202ENST00000527683 TMEM121BQ9BXQ6 578 aaPredicted RBP10.1□□□□□ -0.79
LINC01001-202ENST00000527683 MAGI1Q96QZ7 1491 aaPredicted RBP10.1□□□□□ -0.79
LINC01001-202ENST00000527683 CUX1P39880 1505 aa10.09□□□□□ -0.79
LINC01001-202ENST00000527683 PPP1R37O75864 691 aa10.09□□□□□ -0.79
LINC01001-202ENST00000527683 PRDM2Q13029 1718 aa10.09□□□□□ -0.79
LINC01001-202ENST00000527683 SYNJ2O15056 1496 aa10.09□□□□□ -0.79
LINC01001-202ENST00000527683 CLASP1Q7Z460 1538 aa10.08□□□□□ -0.8
LINC01001-202ENST00000527683 BOLA1Q9Y3E2 137 aa10.08□□□□□ -0.8
LINC01001-202ENST00000527683 CHD1O14646 1710 aa10.07□□□□□ -0.8
LINC01001-202ENST00000527683 GAPVD1Q14C86 1478 aa10.07□□□□□ -0.8
LINC01001-202ENST00000527683 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
LINC01001-202ENST00000527683 L3MBTL3Q96JM7 780 aaPredicted RBP10.07□□□□□ -0.8
LINC01001-202ENST00000527683 AMER1Q5JTC6 1135 aaPredicted RBP10.06□□□□□ -0.8
LINC01001-202ENST00000527683 SLAIN1Q8ND83 568 aa10.06□□□□□ -0.8
LINC01001-202ENST00000527683 NLRP6P59044 892 aa10.05□□□□□ -0.8
LINC01001-202ENST00000527683 MICALL2Q8IY33 904 aa10.05□□□□□ -0.8
LINC01001-202ENST00000527683 SUPT5HO00267 1087 aaKnown RBP10.04□□□□□ -0.8
LINC01001-202ENST00000527683 SYNJ1O43426 1573 aa10.04□□□□□ -0.8
LINC01001-202ENST00000527683 ABCA10Q8WWZ4 1543 aa10.02□□□□□ -0.81
LINC01001-202ENST00000527683 WDR97A6NE52 1622 aa10.01□□□□□ -0.81
LINC01001-202ENST00000527683 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.01□□□□□ -0.81
LINC01001-202ENST00000527683 JPH4Q96JJ6 628 aa10□□□□□ -0.81
LINC01001-202ENST00000527683 WRNQ14191 1432 aaPredicted RBP eCLIP9.99□□□□□ -0.81
LINC01001-202ENST00000527683 C3orf67Q6ZVT6 689 aa9.98□□□□□ -0.81
LINC01001-202ENST00000527683 NUP160Q12769 1436 aa9.98□□□□□ -0.81
LINC01001-202ENST00000527683 GTPBP6O43824 516 aaPredicted RBP9.96□□□□□ -0.82
LINC01001-202ENST00000527683 GRIN2AQ12879 1464 aa9.96□□□□□ -0.82
LINC01001-202ENST00000527683 FAM163AQ96GL9 167 aaPredicted RBP9.95□□□□□ -0.82
LINC01001-202ENST00000527683 FHAD1B1AJZ9 1412 aa9.95□□□□□ -0.82
LINC01001-202ENST00000527683 ERCC6L2Q5T890 1561 aa9.95□□□□□ -0.82
LINC01001-202ENST00000527683 FAM69CQ0P6D2 419 aa9.93□□□□□ -0.82
LINC01001-202ENST00000527683 PRG4Q92954 1404 aaPredicted RBP9.92□□□□□ -0.82
LINC01001-202ENST00000527683 HOXB3P14651 431 aaPredicted RBP9.92□□□□□ -0.82
LINC01001-202ENST00000527683 KIF3CO14782 793 aa9.91□□□□□ -0.82
LINC01001-202ENST00000527683 ST18O60284 1047 aa9.91□□□□□ -0.82
LINC01001-202ENST00000527683 ABCA5Q8WWZ7 1642 aa9.9□□□□□ -0.82
LINC01001-202ENST00000527683 CEP170Q5SW79 1584 aa9.9□□□□□ -0.82
LINC01001-202ENST00000527683 G3V3G9 751 aa9.89□□□□□ -0.83
LINC01001-202ENST00000527683 C2orf72A6NCS6 295 aa9.87□□□□□ -0.83
LINC01001-202ENST00000527683 KDM4FA0A1W2PPD8 638 aa9.86□□□□□ -0.83
LINC01001-202ENST00000527683 IGF1RP08069 1367 aa9.86□□□□□ -0.83
LINC01001-202ENST00000527683 ERICH3Q5RHP9 1530 aa9.84□□□□□ -0.83
LINC01001-202ENST00000527683 POTEMA6NI47 508 aa9.84□□□□□ -0.83
LINC01001-202ENST00000527683 POTEGQ6S5H5 508 aa9.84□□□□□ -0.83
LINC01001-202ENST00000527683 ADAMTS12P58397 1594 aa9.84□□□□□ -0.83
LINC01001-202ENST00000527683 PBRM1Q86U86 1689 aa9.83□□□□□ -0.84
LINC01001-202ENST00000527683 ABCC10Q5T3U5 1492 aa9.83□□□□□ -0.84
LINC01001-202ENST00000527683 TOP2BQ02880 1626 aa9.82□□□□□ -0.84
LINC01001-202ENST00000527683 BBXQ8WY36 941 aaPredicted RBP9.82□□□□□ -0.84
LINC01001-202ENST00000527683 SHROOM2Q13796 1616 aa9.82□□□□□ -0.84
LINC01001-202ENST00000527683 CADPS2Q86UW7 1296 aa9.81□□□□□ -0.84
LINC01001-202ENST00000527683 POTEB3A0JP26 581 aa9.8□□□□□ -0.84
LINC01001-202ENST00000527683 POTEBQ6S5H4 581 aa9.8□□□□□ -0.84
LINC01001-202ENST00000527683 MARVELD3Q96A59 401 aa9.79□□□□□ -0.84
LINC01001-202ENST00000527683 NCKAP5LQ9HCH0 1330 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms