RNA–Protein interactions for RNA: ENST00000527683.1

LINC01001-202, Transcript of long intergenic non-protein coding RNA 1001, humanhuman

TSL 1 (best)

Gene LINC01001, Length 683 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01001-202ENST00000527683 AEBP2Q6ZN18 517 aaPredicted RBP21.91■■□□□ 1.1
LINC01001-202ENST00000527683 CHIC1Q5VXU3 224 aa21.02■□□□□ 0.96
LINC01001-202ENST00000527683 PHF23Q9BUL5 403 aaPredicted RBP18.6■□□□□ 0.57
LINC01001-202ENST00000527683 SENP3Q9H4L4 574 aaPredicted RBP18.38■□□□□ 0.53
LINC01001-202ENST00000527683 FOXD1Q16676 465 aa17.25■□□□□ 0.35
LINC01001-202ENST00000527683 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
LINC01001-202ENST00000527683 PPP6R1Q9UPN7 881 aa16.51■□□□□ 0.23
LINC01001-202ENST00000527683 ADRA2BP18089 450 aa16.41■□□□□ 0.22
LINC01001-202ENST00000527683 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
LINC01001-202ENST00000527683 MSH5O43196 834 aa15.8■□□□□ 0.12
LINC01001-202ENST00000527683 MAPK8IP2Q13387 824 aaPredicted RBP15.01□□□□□ -0.01
LINC01001-202ENST00000527683 POTEDQ86YR6 584 aa14.98□□□□□ -0.01
LINC01001-202ENST00000527683 PPP4R3CPQ6ZMV5 832 aa14.9□□□□□ -0.02
LINC01001-202ENST00000527683 SCAF1Q9H7N4 1312 aaKnown RBP14.73□□□□□ -0.05
LINC01001-202ENST00000527683 DMRT2Q9Y5R5 561 aa14.71□□□□□ -0.05
LINC01001-202ENST00000527683 CNKSR2Q8WXI2 1034 aa14.47□□□□□ -0.09
LINC01001-202ENST00000527683 KCNA4P22459 653 aa14.36□□□□□ -0.11
LINC01001-202ENST00000527683 HOXD11P31277 338 aaPredicted RBP14.32□□□□□ -0.12
LINC01001-202ENST00000527683 NPM3O75607 178 aaKnown RBP14.27□□□□□ -0.13
LINC01001-202ENST00000527683 NCBP3Q53F19 620 aaKnown RBP14.26□□□□□ -0.13
LINC01001-202ENST00000527683 RNF216Q9NWF9 866 aaPredicted RBP14.26□□□□□ -0.13
LINC01001-202ENST00000527683 DCAF8L1A6NGE4 600 aa13.99□□□□□ -0.17
LINC01001-202ENST00000527683 NISCHQ9Y2I1 1504 aa13.95□□□□□ -0.18
LINC01001-202ENST00000527683 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
LINC01001-202ENST00000527683 RNF39Q9H2S5 420 aa13.65□□□□□ -0.22
LINC01001-202ENST00000527683 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
LINC01001-202ENST00000527683 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.54□□□□□ -0.24
LINC01001-202ENST00000527683 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
LINC01001-202ENST00000527683 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
LINC01001-202ENST00000527683 CACNB1Q02641 598 aaPredicted RBP13.37□□□□□ -0.27
LINC01001-202ENST00000527683 C1QBPQ07021 282 aaKnown RBP13.37□□□□□ -0.27
LINC01001-202ENST00000527683 ZBTB22O15209 634 aa13.3□□□□□ -0.28
LINC01001-202ENST00000527683 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
LINC01001-202ENST00000527683 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
LINC01001-202ENST00000527683 MYCNP04198 464 aaPredicted RBP13.06□□□□□ -0.32
LINC01001-202ENST00000527683 CAPN15O75808 1086 aa12.97□□□□□ -0.33
LINC01001-202ENST00000527683 ATF5Q9Y2D1 282 aaPredicted RBP12.97□□□□□ -0.33
LINC01001-202ENST00000527683 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
LINC01001-202ENST00000527683 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
LINC01001-202ENST00000527683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.93□□□□□ -0.34
LINC01001-202ENST00000527683 HNRNPUL2Q1KMD3 747 aaKnown RBP12.93□□□□□ -0.34
LINC01001-202ENST00000527683 DSG3P32926 999 aa12.92□□□□□ -0.34
LINC01001-202ENST00000527683 EHMT2Q96KQ7 1210 aa12.9□□□□□ -0.34
LINC01001-202ENST00000527683 TRHP20396 242 aaPredicted RBP12.88□□□□□ -0.35
LINC01001-202ENST00000527683 ABCB7O75027 752 aa12.79□□□□□ -0.36
LINC01001-202ENST00000527683 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
LINC01001-202ENST00000527683 APLP2Q06481 763 aa12.77□□□□□ -0.37
LINC01001-202ENST00000527683 ABCC9O60706 1549 aa12.76□□□□□ -0.37
LINC01001-202ENST00000527683 ATXN8OSP0DMR3 200 aa12.67□□□□□ -0.38
LINC01001-202ENST00000527683 POLA2Q14181 598 aa12.65□□□□□ -0.38
LINC01001-202ENST00000527683 CCDC180Q9P1Z9 1646 aa12.37□□□□□ -0.43
LINC01001-202ENST00000527683 MKRN4PQ13434 485 aaPredicted RBP12.36□□□□□ -0.43
LINC01001-202ENST00000527683 OSCARQ8IYS5 282 aa12.26□□□□□ -0.45
LINC01001-202ENST00000527683 ZBTB12Q9Y330 459 aaPredicted RBP12.23□□□□□ -0.45
LINC01001-202ENST00000527683 FBLN2P98095 1184 aa12.13□□□□□ -0.47
LINC01001-202ENST00000527683 RBM42Q9BTD8 480 aaKnown RBP12.11□□□□□ -0.47
LINC01001-202ENST00000527683 DCAF8L2P0C7V8 631 aa12.02□□□□□ -0.49
LINC01001-202ENST00000527683 AKT1S1Q96B36 256 aa12□□□□□ -0.49
LINC01001-202ENST00000527683 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
LINC01001-202ENST00000527683 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
LINC01001-202ENST00000527683 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
LINC01001-202ENST00000527683 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.49
LINC01001-202ENST00000527683 REM2Q8IYK8 340 aaPredicted RBP11.97□□□□□ -0.49
LINC01001-202ENST00000527683 SSUH2Q9Y2M2 353 aa11.97□□□□□ -0.49
LINC01001-202ENST00000527683 RB1CC1Q8TDY2 1594 aa11.96□□□□□ -0.49
LINC01001-202ENST00000527683 ZNF692Q9BU19 519 aaPredicted RBP11.93□□□□□ -0.5
LINC01001-202ENST00000527683 NACADO15069 1562 aa11.88□□□□□ -0.51
LINC01001-202ENST00000527683 PITPNM1O00562 1244 aa11.84□□□□□ -0.51
LINC01001-202ENST00000527683 CHRDL2Q6WN34 429 aa11.83□□□□□ -0.52
LINC01001-202ENST00000527683 SPDYE4A6NLX3 237 aa11.8□□□□□ -0.52
LINC01001-202ENST00000527683 POTEHQ6S545 545 aa11.75□□□□□ -0.53
LINC01001-202ENST00000527683 MYO15BQ96JP2 1530 aa11.7□□□□□ -0.54
LINC01001-202ENST00000527683 PIP4P2Q8N4L2 257 aa11.69□□□□□ -0.54
LINC01001-202ENST00000527683 PROM2Q8N271 834 aa11.68□□□□□ -0.54
LINC01001-202ENST00000527683 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.54
LINC01001-202ENST00000527683 SPDYE1Q8NFV5 336 aaPredicted RBP11.67□□□□□ -0.54
LINC01001-202ENST00000527683 CLEC11AQ9Y240 323 aa11.67□□□□□ -0.54
LINC01001-202ENST00000527683 BICRAQ9NZM4 1560 aa11.66□□□□□ -0.54
LINC01001-202ENST00000527683 FKBP8Q14318 412 aa11.62□□□□□ -0.55
LINC01001-202ENST00000527683 CHADLQ6NUI6 762 aa11.53□□□□□ -0.56
LINC01001-202ENST00000527683 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.56
LINC01001-202ENST00000527683 CECR2Q9BXF3 1484 aa11.51□□□□□ -0.57
LINC01001-202ENST00000527683 PRR29P0C7W0 189 aa11.5□□□□□ -0.57
LINC01001-202ENST00000527683 PRKAR2AP13861 404 aaKnown RBP11.5□□□□□ -0.57
LINC01001-202ENST00000527683 ZCCHC6Q5VYS8 1495 aaKnown RBP11.49□□□□□ -0.57
LINC01001-202ENST00000527683 DCAF1Q9Y4B6 1507 aa11.48□□□□□ -0.57
LINC01001-202ENST00000527683 SHROOM4Q9ULL8 1493 aa11.44□□□□□ -0.58
LINC01001-202ENST00000527683 CREBZFQ9NS37 354 aa11.44□□□□□ -0.58
LINC01001-202ENST00000527683 CC2D2AQ9P2K1 1620 aa11.42□□□□□ -0.58
LINC01001-202ENST00000527683 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
LINC01001-202ENST00000527683 EVX2Q03828 476 aa11.4□□□□□ -0.58
LINC01001-202ENST00000527683 DNAJC5Q9H3Z4 198 aa11.38□□□□□ -0.59
LINC01001-202ENST00000527683 EIF4G1Q04637 1599 aaKnown RBP11.37□□□□□ -0.59
LINC01001-202ENST00000527683 SCRIBQ14160 1630 aa11.37□□□□□ -0.59
LINC01001-202ENST00000527683 MNX1P50219 401 aaPredicted RBP11.36□□□□□ -0.59
LINC01001-202ENST00000527683 FARP1Q9Y4F1 1045 aaPredicted RBP11.33□□□□□ -0.6
LINC01001-202ENST00000527683 HAX1O00165 279 aa11.29□□□□□ -0.6
LINC01001-202ENST00000527683 C19orf67A6NJJ6 358 aa11.28□□□□□ -0.6
LINC01001-202ENST00000527683 MIER1Q8N108 512 aa11.19□□□□□ -0.62
LINC01001-202ENST00000527683 SP7Q8TDD2 431 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms