RNA–Protein interactions for RNA: ENST00000509109.5

CCSER1-208, Transcript of coiled-coil serine rich protein 1, humanhuman

TSL 1 (best)

Gene CCSER1, Length 1,070 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1-208ENST00000509109 IFT140Q96RY7 1462 aa13.54□□□□□ -0.24
CCSER1-208ENST00000509109 DNMBPQ6XZF7 1577 aa13.54□□□□□ -0.24
CCSER1-208ENST00000509109 TOPBP1Q92547 1522 aa13.53□□□□□ -0.24
CCSER1-208ENST00000509109 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.51□□□□□ -0.25
CCSER1-208ENST00000509109 ZFP91Q96JP5 570 aaPredicted RBP13.51□□□□□ -0.25
CCSER1-208ENST00000509109 OCEL1Q9H607 264 aa13.51□□□□□ -0.25
CCSER1-208ENST00000509109 RGL2O15211 777 aa13.5□□□□□ -0.25
CCSER1-208ENST00000509109 VGFO15240 615 aaPredicted RBP13.5□□□□□ -0.25
CCSER1-208ENST00000509109 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCSER1-208ENST00000509109 EIF4G3O43432 1585 aaKnown RBP13.46□□□□□ -0.25
CCSER1-208ENST00000509109 SCUBE2Q9NQ36 999 aa13.45□□□□□ -0.26
CCSER1-208ENST00000509109 MAMSTRQ6ZN01 415 aa13.44□□□□□ -0.26
CCSER1-208ENST00000509109 EFCAB3Q8N7B9 438 aa13.44□□□□□ -0.26
CCSER1-208ENST00000509109 ZNF608Q9ULD9 1512 aaPredicted RBP13.44□□□□□ -0.26
CCSER1-208ENST00000509109 PDCD7Q8N8D1 485 aaKnown RBP13.43□□□□□ -0.26
CCSER1-208ENST00000509109 TARBP1Q13395 1621 aaKnown RBP13.42□□□□□ -0.26
CCSER1-208ENST00000509109 BCL11BQ9C0K0 894 aaPredicted RBP13.4□□□□□ -0.26
CCSER1-208ENST00000509109 POLA1P09884 1462 aaPredicted RBP13.4□□□□□ -0.26
CCSER1-208ENST00000509109 WDR97A6NE52 1622 aa13.39□□□□□ -0.27
CCSER1-208ENST00000509109 TAOK2Q9UL54 1235 aa13.39□□□□□ -0.27
CCSER1-208ENST00000509109 DPY19L2Q6NUT2 758 aa13.38□□□□□ -0.27
CCSER1-208ENST00000509109 STK24Q9Y6E0 443 aa13.38□□□□□ -0.27
CCSER1-208ENST00000509109 STK25O00506 426 aa13.37□□□□□ -0.27
CCSER1-208ENST00000509109 CHD1O14646 1710 aa13.34□□□□□ -0.27
CCSER1-208ENST00000509109 ILDR1Q86SU0 546 aaPredicted RBP13.34□□□□□ -0.27
CCSER1-208ENST00000509109 FGD5Q6ZNL6 1462 aa13.33□□□□□ -0.28
CCSER1-208ENST00000509109 POTEMA6NI47 508 aa13.32□□□□□ -0.28
CCSER1-208ENST00000509109 RIMBP3CA6NJZ7 1639 aa13.31□□□□□ -0.28
CCSER1-208ENST00000509109 RIMBP3BA6NNM3 1639 aa13.31□□□□□ -0.28
CCSER1-208ENST00000509109 RIMBP3Q9UFD9 1639 aa13.31□□□□□ -0.28
CCSER1-208ENST00000509109 SOGA1O94964 1423 aa13.31□□□□□ -0.28
CCSER1-208ENST00000509109 AQRO60306 1485 aaKnown RBP eCLIP13.31□□□□□ -0.28
CCSER1-208ENST00000509109 CUX1P39880 1505 aa13.31□□□□□ -0.28
CCSER1-208ENST00000509109 PHF8Q9UPP1 1060 aa13.3□□□□□ -0.28
CCSER1-208ENST00000509109 SLAIN1Q8ND83 568 aa13.29□□□□□ -0.28
CCSER1-208ENST00000509109 L3MBTL3Q96JM7 780 aaPredicted RBP13.29□□□□□ -0.28
CCSER1-208ENST00000509109 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
CCSER1-208ENST00000509109 SOX12O15370 315 aa13.28□□□□□ -0.28
CCSER1-208ENST00000509109 POTEGQ6S5H5 508 aa13.28□□□□□ -0.28
CCSER1-208ENST00000509109 ARHGEF11O15085 1522 aa13.28□□□□□ -0.28
CCSER1-208ENST00000509109 SUPT5HO00267 1087 aaKnown RBP13.27□□□□□ -0.29
CCSER1-208ENST00000509109 MAGI1Q96QZ7 1491 aaPredicted RBP13.26□□□□□ -0.29
CCSER1-208ENST00000509109 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.26□□□□□ -0.29
CCSER1-208ENST00000509109 C3orf67Q6ZVT6 689 aa13.25□□□□□ -0.29
CCSER1-208ENST00000509109 SNAPC4Q5SXM2 1469 aa13.24□□□□□ -0.29
CCSER1-208ENST00000509109 TDRD9Q8NDG6 1382 aaKnown RBP13.24□□□□□ -0.29
CCSER1-208ENST00000509109 G3V3G9 751 aa13.24□□□□□ -0.29
CCSER1-208ENST00000509109 MS4A4AQ96JQ5 239 aa13.24□□□□□ -0.29
CCSER1-208ENST00000509109 BOLA1Q9Y3E2 137 aa13.24□□□□□ -0.29
CCSER1-208ENST00000509109 PBRM1Q86U86 1689 aa13.24□□□□□ -0.29
CCSER1-208ENST00000509109 GRIN2BQ13224 1484 aa13.23□□□□□ -0.29
CCSER1-208ENST00000509109 LCE2DQ5TA82 110 aaPredicted RBP13.22□□□□□ -0.29
CCSER1-208ENST00000509109 SYNJ1O43426 1573 aa13.21□□□□□ -0.29
CCSER1-208ENST00000509109 CHGAP10645 457 aaKnown RBP13.2□□□□□ -0.3
CCSER1-208ENST00000509109 MFRPQ9BY79 579 aa13.2□□□□□ -0.3
CCSER1-208ENST00000509109 ABCA5Q8WWZ7 1642 aa13.2□□□□□ -0.3
CCSER1-208ENST00000509109 ABCA10Q8WWZ4 1543 aa13.19□□□□□ -0.3
CCSER1-208ENST00000509109 SYNJ2O15056 1496 aa13.19□□□□□ -0.3
CCSER1-208ENST00000509109 NLRP6P59044 892 aa13.19□□□□□ -0.3
CCSER1-208ENST00000509109 BIVM-ERCC5R4GMW8 1640 aa13.19□□□□□ -0.3
CCSER1-208ENST00000509109 GAPVD1Q14C86 1478 aa13.18□□□□□ -0.3
CCSER1-208ENST00000509109 FAM163AQ96GL9 167 aaPredicted RBP13.18□□□□□ -0.3
CCSER1-208ENST00000509109 TOP2BQ02880 1626 aa13.17□□□□□ -0.3
CCSER1-208ENST00000509109 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
CCSER1-208ENST00000509109 CLASP1Q7Z460 1538 aa13.17□□□□□ -0.3
CCSER1-208ENST00000509109 WRNQ14191 1432 aaPredicted RBP eCLIP13.16□□□□□ -0.3
CCSER1-208ENST00000509109 CHMP7Q8WUX9 453 aaPredicted RBP13.16□□□□□ -0.3
CCSER1-208ENST00000509109 HS6ST3Q8IZP7 471 aa13.15□□□□□ -0.3
CCSER1-208ENST00000509109 MICALL2Q8IY33 904 aa13.13□□□□□ -0.31
CCSER1-208ENST00000509109 ARAP1Q96P48 1450 aa13.12□□□□□ -0.31
CCSER1-208ENST00000509109 TMEM121BQ9BXQ6 578 aaPredicted RBP13.12□□□□□ -0.31
CCSER1-208ENST00000509109 ADAMTS12P58397 1594 aa13.1□□□□□ -0.31
CCSER1-208ENST00000509109 CYB5RLQ6IPT4 315 aa13.09□□□□□ -0.31
CCSER1-208ENST00000509109 GRIN2AQ12879 1464 aa13.06□□□□□ -0.32
CCSER1-208ENST00000509109 ERICH3Q5RHP9 1530 aa13.06□□□□□ -0.32
CCSER1-208ENST00000509109 RTN4Q9NQC3 1192 aaKnown RBP13.04□□□□□ -0.32
CCSER1-208ENST00000509109 PPP1R37O75864 691 aa13.03□□□□□ -0.32
CCSER1-208ENST00000509109 TMEM92Q6UXU6 159 aa13.03□□□□□ -0.32
CCSER1-208ENST00000509109 FHAD1B1AJZ9 1412 aa13.03□□□□□ -0.32
CCSER1-208ENST00000509109 NKX1-1Q15270 411 aaPredicted RBP13.02□□□□□ -0.33
CCSER1-208ENST00000509109 AMER1Q5JTC6 1135 aaPredicted RBP13.02□□□□□ -0.33
CCSER1-208ENST00000509109 ST18O60284 1047 aa13.01□□□□□ -0.33
CCSER1-208ENST00000509109 CEP170Q5SW79 1584 aa13□□□□□ -0.33
CCSER1-208ENST00000509109 NUP160Q12769 1436 aa13□□□□□ -0.33
CCSER1-208ENST00000509109 SNPHO15079 494 aa13□□□□□ -0.33
CCSER1-208ENST00000509109 PCDH10Q9P2E7 1040 aa12.99□□□□□ -0.33
CCSER1-208ENST00000509109 SHROOM2Q13796 1616 aa12.97□□□□□ -0.33
CCSER1-208ENST00000509109 CUL7Q14999 1698 aa12.93□□□□□ -0.34
CCSER1-208ENST00000509109 RUSC2Q8N2Y8 1516 aa12.92□□□□□ -0.34
CCSER1-208ENST00000509109 KIF27Q86VH2 1401 aa12.91□□□□□ -0.34
CCSER1-208ENST00000509109 ERCC6L2Q5T890 1561 aa12.9□□□□□ -0.34
CCSER1-208ENST00000509109 HOXB3P14651 431 aaPredicted RBP12.9□□□□□ -0.34
CCSER1-208ENST00000509109 MARVELD3Q96A59 401 aa12.9□□□□□ -0.34
CCSER1-208ENST00000509109 C2orf72A6NCS6 295 aa12.87□□□□□ -0.35
CCSER1-208ENST00000509109 ZNF710Q8N1W2 664 aa12.85□□□□□ -0.35
CCSER1-208ENST00000509109 GTPBP6O43824 516 aaPredicted RBP12.84□□□□□ -0.35
CCSER1-208ENST00000509109 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
CCSER1-208ENST00000509109 PRG4Q92954 1404 aaPredicted RBP12.84□□□□□ -0.35
CCSER1-208ENST00000509109 RYDENQ9NUL5 291 aaKnown RBP12.83□□□□□ -0.36
CCSER1-208ENST00000509109 KIF3CO14782 793 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms