RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CFAP53Q96M91 514 aa14.18□□□□□ -0.14
LIMCH1-205ENST00000503057 CC2D1BQ5T0F9 858 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-205ENST00000503057 KTN1Q86UP2 1357 aaKnown RBP14.17□□□□□ -0.14
LIMCH1-205ENST00000503057 ANP32EQ9BTT0 268 aa14.17□□□□□ -0.14
LIMCH1-205ENST00000503057 NESP48681 1621 aa14.17□□□□□ -0.14
LIMCH1-205ENST00000503057 GRIN2BQ13224 1484 aa14.17□□□□□ -0.14
LIMCH1-205ENST00000503057 RALBP1Q15311 655 aa14.16□□□□□ -0.14
LIMCH1-205ENST00000503057 EFCAB2Q5VUJ9 269 aa14.15□□□□□ -0.14
LIMCH1-205ENST00000503057 CUL7Q14999 1698 aa14.15□□□□□ -0.14
LIMCH1-205ENST00000503057 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
LIMCH1-205ENST00000503057 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
LIMCH1-205ENST00000503057 AQRO60306 1485 aaKnown RBP eCLIP14.15□□□□□ -0.14
LIMCH1-205ENST00000503057 HNRNPMP52272 730 aaKnown RBP eCLIP14.14□□□□□ -0.15
LIMCH1-205ENST00000503057 DDRGK1Q96HY6 314 aa14.14□□□□□ -0.15
LIMCH1-205ENST00000503057 MAP3K1Q13233 1512 aa14.14□□□□□ -0.15
LIMCH1-205ENST00000503057 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
LIMCH1-205ENST00000503057 HECW1Q76N89 1606 aa14.12□□□□□ -0.15
LIMCH1-205ENST00000503057 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIMCH1-205ENST00000503057 NBR1Q14596 966 aa14.12□□□□□ -0.15
LIMCH1-205ENST00000503057 MRC2Q9UBG0 1479 aa14.12□□□□□ -0.15
LIMCH1-205ENST00000503057 BCL11AQ9H165 835 aa14.11□□□□□ -0.15
LIMCH1-205ENST00000503057 B4GALNT3Q6L9W6 998 aa14.11□□□□□ -0.15
LIMCH1-205ENST00000503057 SUPT6HQ7KZ85 1726 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-205ENST00000503057 LAMC3Q9Y6N6 1575 aa14.1□□□□□ -0.15
LIMCH1-205ENST00000503057 PCF11O94913 1555 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-205ENST00000503057 PTPRGP23470 1445 aa14.09□□□□□ -0.15
LIMCH1-205ENST00000503057 IFT140Q96RY7 1462 aa14.08□□□□□ -0.15
LIMCH1-205ENST00000503057 HFM1A2PYH4 1435 aa14.07□□□□□ -0.16
LIMCH1-205ENST00000503057 EIF3AQ14152 1382 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-205ENST00000503057 CCDC144AA2RUR9 1427 aa14.07□□□□□ -0.16
LIMCH1-205ENST00000503057 KIF15Q9NS87 1388 aa14.07□□□□□ -0.16
LIMCH1-205ENST00000503057 MIA2Q96PC5 1412 aa14.07□□□□□ -0.16
LIMCH1-205ENST00000503057 RBM19Q9Y4C8 960 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-205ENST00000503057 USP47Q96K76 1375 aa14.05□□□□□ -0.16
LIMCH1-205ENST00000503057 HSP90AA1P07900 732 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-205ENST00000503057 NUDCQ9Y266 331 aa14.04□□□□□ -0.16
LIMCH1-205ENST00000503057 PRKRIP1Q9H875 184 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-205ENST00000503057 TSHZ2Q9NRE2 1034 aa14.03□□□□□ -0.16
LIMCH1-205ENST00000503057 SPAG9O60271 1321 aaKnown RBP14.03□□□□□ -0.16
LIMCH1-205ENST00000503057 MYH16Q9H6N6 1097 aa14.03□□□□□ -0.16
LIMCH1-205ENST00000503057 BECN1Q14457 450 aa14.02□□□□□ -0.17
LIMCH1-205ENST00000503057 MAPK8IP3Q9UPT6 1336 aa14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 NLRP13Q86W25 1043 aa14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 POGKQ9P215 609 aa14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 CNTLNQ9NXG0 1405 aa14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 MYBBP1AQ9BQG0 1328 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 NOP58Q9Y2X3 529 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 ZNF644Q9H582 1327 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-205ENST00000503057 CCDC7Q96M83 1385 aa14□□□□□ -0.17
LIMCH1-205ENST00000503057 ARID4BQ4LE39 1312 aaPredicted RBP14□□□□□ -0.17
LIMCH1-205ENST00000503057 RCAN3Q9UKA8 241 aa14□□□□□ -0.17
LIMCH1-205ENST00000503057 ZBED9Q6R2W3 1325 aa14□□□□□ -0.17
LIMCH1-205ENST00000503057 SENP3Q9H4L4 574 aaPredicted RBP14□□□□□ -0.17
LIMCH1-205ENST00000503057 IQGAP2Q13576 1575 aa13.99□□□□□ -0.17
LIMCH1-205ENST00000503057 ANKRD50Q9ULJ7 1429 aa13.99□□□□□ -0.17
LIMCH1-205ENST00000503057 ST20-MTHFSA0A0A6YYL1 179 aa13.99□□□□□ -0.17
LIMCH1-205ENST00000503057 FTSJ3Q8IY81 847 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-205ENST00000503057 PDE3BQ13370 1112 aa13.98□□□□□ -0.17
LIMCH1-205ENST00000503057 NEUROD2Q15784 382 aa13.98□□□□□ -0.17
LIMCH1-205ENST00000503057 MORC1Q86VD1 984 aa13.98□□□□□ -0.17
LIMCH1-205ENST00000503057 PNNQ9H307 717 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-205ENST00000503057 PLPPR3Q6T4P5 718 aa13.97□□□□□ -0.17
LIMCH1-205ENST00000503057 MS4A1P11836 297 aa13.97□□□□□ -0.17
LIMCH1-205ENST00000503057 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-205ENST00000503057 KIF3BO15066 747 aa13.97□□□□□ -0.17
LIMCH1-205ENST00000503057 PPM1GO15355 546 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-205ENST00000503057 EPRSP07814 1512 aaKnown RBP13.96□□□□□ -0.17
LIMCH1-205ENST00000503057 WDR97A6NE52 1622 aa13.96□□□□□ -0.17
LIMCH1-205ENST00000503057 SNAPC4Q5SXM2 1469 aa13.96□□□□□ -0.17
LIMCH1-205ENST00000503057 GGT6Q6P531 493 aa13.95□□□□□ -0.18
LIMCH1-205ENST00000503057 SYNJ2O15056 1496 aa13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 TROQ12816 1431 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 PTPN23Q9H3S7 1636 aa13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 ANP32BQ92688 251 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 KIF7Q2M1P5 1343 aa13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 DAPK1P53355 1430 aa13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 FRAT1Q92837 279 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-205ENST00000503057 KIAA0586Q9BVV6 1533 aa13.93□□□□□ -0.18
LIMCH1-205ENST00000503057 WASHC2AQ641Q2 1341 aa13.93□□□□□ -0.18
LIMCH1-205ENST00000503057 NAIPQ13075 1403 aa13.93□□□□□ -0.18
LIMCH1-205ENST00000503057 SRPK2P78362 688 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 CHMP4BQ9H444 224 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 URB2Q14146 1524 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 ROCK1Q13464 1354 aa13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 RGS3P49796 1198 aa13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 CDK13Q14004 1512 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-205ENST00000503057 TCERG1O14776 1098 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-205ENST00000503057 EIF5BO60841 1220 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-205ENST00000503057 KIAA1107Q9UPP5 1409 aa13.9□□□□□ -0.18
LIMCH1-205ENST00000503057 PANK3Q9H999 370 aa13.89□□□□□ -0.19
LIMCH1-205ENST00000503057 THOC2Q8NI27 1593 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-205ENST00000503057 HDGFP51858 240 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-205ENST00000503057 ARHGAP5Q13017 1502 aa13.88□□□□□ -0.19
LIMCH1-205ENST00000503057 PRG4Q92954 1404 aaPredicted RBP13.88□□□□□ -0.19
LIMCH1-205ENST00000503057 C9orf84Q5VXU9 1444 aa13.87□□□□□ -0.19
LIMCH1-205ENST00000503057 GOLGA2Q08379 1002 aa13.87□□□□□ -0.19
LIMCH1-205ENST00000503057 CTTNBP2Q8WZ74 1663 aa13.87□□□□□ -0.19
LIMCH1-205ENST00000503057 STAC3Q96MF2 364 aa13.86□□□□□ -0.19
LIMCH1-205ENST00000503057 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms