RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 NISCHQ9Y2I1 1504 aa19.95■□□□□ 0.78
LIMCH1-205ENST00000503057 DCAF8L2P0C7V8 631 aa18.63■□□□□ 0.57
LIMCH1-205ENST00000503057 SUPT5HO00267 1087 aaKnown RBP18.12■□□□□ 0.49
LIMCH1-205ENST00000503057 SHROOM4Q9ULL8 1493 aa18.1■□□□□ 0.49
LIMCH1-205ENST00000503057 EHMT2Q96KQ7 1210 aa17.03■□□□□ 0.32
LIMCH1-205ENST00000503057 PCGF6Q9BYE7 350 aa16.93■□□□□ 0.3
LIMCH1-205ENST00000503057 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
LIMCH1-205ENST00000503057 FAM9AQ8IZU1 332 aaPredicted RBP16.92■□□□□ 0.3
LIMCH1-205ENST00000503057 CCDC180Q9P1Z9 1646 aa16.74■□□□□ 0.27
LIMCH1-205ENST00000503057 CHIC1Q5VXU3 224 aa16.74■□□□□ 0.27
LIMCH1-205ENST00000503057 APLP2Q06481 763 aa16.74■□□□□ 0.27
LIMCH1-205ENST00000503057 ZCCHC6Q5VYS8 1495 aaKnown RBP16.69■□□□□ 0.26
LIMCH1-205ENST00000503057 ZEB1P37275 1124 aaPredicted RBP16.69■□□□□ 0.26
LIMCH1-205ENST00000503057 TRIM26Q12899 539 aaPredicted RBP16.52■□□□□ 0.23
LIMCH1-205ENST00000503057 TTBK1Q5TCY1 1321 aaPredicted RBP16.49■□□□□ 0.23
LIMCH1-205ENST00000503057 UBTFP17480 764 aaKnown RBP16.46■□□□□ 0.22
LIMCH1-205ENST00000503057 HRCP23327 699 aa16.46■□□□□ 0.22
LIMCH1-205ENST00000503057 ABCC9O60706 1549 aa16.45■□□□□ 0.22
LIMCH1-205ENST00000503057 LOC105371045A0A1W2PR82 267 aa16.44■□□□□ 0.22
LIMCH1-205ENST00000503057 CCER1Q8TC90 406 aaPredicted RBP16.42■□□□□ 0.22
LIMCH1-205ENST00000503057 RANGAP1P46060 587 aaPredicted RBP16.31■□□□□ 0.2
LIMCH1-205ENST00000503057 PELP1Q8IZL8 1130 aaKnown RBP16.27■□□□□ 0.19
LIMCH1-205ENST00000503057 SCRIBQ14160 1630 aa16.24■□□□□ 0.19
LIMCH1-205ENST00000503057 CENPBP07199 599 aaPredicted RBP16.21■□□□□ 0.19
LIMCH1-205ENST00000503057 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
LIMCH1-205ENST00000503057 DCAF1Q9Y4B6 1507 aa16.08■□□□□ 0.16
LIMCH1-205ENST00000503057 ATP1B4Q9UN42 357 aaPredicted RBP16.06■□□□□ 0.16
LIMCH1-205ENST00000503057 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
LIMCH1-205ENST00000503057 NACADO15069 1562 aa15.91■□□□□ 0.14
LIMCH1-205ENST00000503057 RB1CC1Q8TDY2 1594 aa15.88■□□□□ 0.13
LIMCH1-205ENST00000503057 RSF1Q96T23 1441 aaPredicted RBP15.86■□□□□ 0.13
LIMCH1-205ENST00000503057 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
LIMCH1-205ENST00000503057 MYO15BQ96JP2 1530 aa15.85■□□□□ 0.13
LIMCH1-205ENST00000503057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.85■□□□□ 0.13
LIMCH1-205ENST00000503057 YTHDC1Q96MU7 727 aaKnown RBP15.81■□□□□ 0.12
LIMCH1-205ENST00000503057 CSRNP3Q8WYN3 585 aa15.78■□□□□ 0.12
LIMCH1-205ENST00000503057 ITGAEP38570 1179 aa15.74■□□□□ 0.11
LIMCH1-205ENST00000503057 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
LIMCH1-205ENST00000503057 NEFLP07196 543 aa15.63■□□□□ 0.09
LIMCH1-205ENST00000503057 BAZ1AQ9NRL2 1556 aaPredicted RBP15.6■□□□□ 0.09
LIMCH1-205ENST00000503057 EEA1Q15075 1411 aa15.54■□□□□ 0.08
LIMCH1-205ENST00000503057 FAM50AQ14320 339 aaKnown RBP15.53■□□□□ 0.08
LIMCH1-205ENST00000503057 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
LIMCH1-205ENST00000503057 ZNF316A6NFI3 1004 aaPredicted RBP15.48■□□□□ 0.07
LIMCH1-205ENST00000503057 GOLGA3Q08378 1498 aa15.44■□□□□ 0.06
LIMCH1-205ENST00000503057 ERICH6Q7L0X2 663 aa15.44■□□□□ 0.06
LIMCH1-205ENST00000503057 MROH2BQ7Z745 1585 aa15.43■□□□□ 0.06
LIMCH1-205ENST00000503057 MYT1Q01538 1121 aa15.42■□□□□ 0.06
LIMCH1-205ENST00000503057 BAZ1BQ9UIG0 1483 aaKnown RBP15.41■□□□□ 0.06
LIMCH1-205ENST00000503057 WRNQ14191 1432 aaPredicted RBP eCLIP15.41■□□□□ 0.06
LIMCH1-205ENST00000503057 CEP162Q5TB80 1403 aa15.4■□□□□ 0.06
LIMCH1-205ENST00000503057 CLIP1P30622 1438 aa15.37■□□□□ 0.05
LIMCH1-205ENST00000503057 TNIKQ9UKE5 1360 aa15.36■□□□□ 0.05
LIMCH1-205ENST00000503057 NEUROD1Q13562 356 aa15.33■□□□□ 0.05
LIMCH1-205ENST00000503057 CEP164Q9UPV0 1460 aa15.32■□□□□ 0.04
LIMCH1-205ENST00000503057 TRIM52Q96A61 297 aa15.3■□□□□ 0.04
LIMCH1-205ENST00000503057 P3H3Q8IVL6 736 aa15.29■□□□□ 0.04
LIMCH1-205ENST00000503057 WIZO95785 1651 aa15.29■□□□□ 0.04
LIMCH1-205ENST00000503057 GTF3C3Q9Y5Q9 886 aa15.28■□□□□ 0.04
LIMCH1-205ENST00000503057 TOP2AP11388 1531 aaKnown RBP15.28■□□□□ 0.04
LIMCH1-205ENST00000503057 ACIN1Q9UKV3 1341 aaKnown RBP15.28■□□□□ 0.04
LIMCH1-205ENST00000503057 CCDC88BA6NC98 1476 aa15.27■□□□□ 0.04
LIMCH1-205ENST00000503057 POLR3GLQ9BT43 218 aa15.25■□□□□ 0.03
LIMCH1-205ENST00000503057 ANP32CO43423 234 aa15.2■□□□□ 0.02
LIMCH1-205ENST00000503057 KIF27Q86VH2 1401 aa15.19■□□□□ 0.02
LIMCH1-205ENST00000503057 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
LIMCH1-205ENST00000503057 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
LIMCH1-205ENST00000503057 SOGA1O94964 1423 aa15.17■□□□□ 0.02
LIMCH1-205ENST00000503057 MYT1LQ9UL68 1186 aa15.17■□□□□ 0.02
LIMCH1-205ENST00000503057 SMARCA4P51532 1647 aa15.15■□□□□ 0.02
LIMCH1-205ENST00000503057 FBLN2P98095 1184 aa15.1■□□□□ 0.01
LIMCH1-205ENST00000503057 CDK11AQ9UQ88 783 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-205ENST00000503057 CLSPNQ9HAW4 1339 aa15.07■□□□□ 0
LIMCH1-205ENST00000503057 TONSLQ96HA7 1378 aa15.06■□□□□ 0
LIMCH1-205ENST00000503057 CNGB1Q14028 1251 aaPredicted RBP15.05■□□□□ 0
LIMCH1-205ENST00000503057 ARID3CA6NKF2 412 aa15.03■□□□□ -0
LIMCH1-205ENST00000503057 MTUS2Q5JR59 1369 aa15.03■□□□□ -0
LIMCH1-205ENST00000503057 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
LIMCH1-205ENST00000503057 ZNF326Q5BKZ1 582 aaKnown RBP14.99□□□□□ -0.01
LIMCH1-205ENST00000503057 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
LIMCH1-205ENST00000503057 ZNF777Q9ULD5 760 aaPredicted RBP14.94□□□□□ -0.02
LIMCH1-205ENST00000503057 BCANQ96GW7 911 aa14.94□□□□□ -0.02
LIMCH1-205ENST00000503057 CUX2O14529 1486 aa14.93□□□□□ -0.02
LIMCH1-205ENST00000503057 MIER1Q8N108 512 aa14.93□□□□□ -0.02
LIMCH1-205ENST00000503057 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
LIMCH1-205ENST00000503057 SCAF1Q9H7N4 1312 aaKnown RBP14.92□□□□□ -0.02
LIMCH1-205ENST00000503057 CARMIL1Q5VZK9 1371 aa14.9□□□□□ -0.02
LIMCH1-205ENST00000503057 DDX10Q13206 875 aaKnown RBP14.9□□□□□ -0.02
LIMCH1-205ENST00000503057 CCNB3Q8WWL7 1395 aa14.88□□□□□ -0.03
LIMCH1-205ENST00000503057 DAXXQ9UER7 740 aaPredicted RBP14.88□□□□□ -0.03
LIMCH1-205ENST00000503057 CHIC2Q9UKJ5 165 aa14.87□□□□□ -0.03
LIMCH1-205ENST00000503057 SLC4A1APQ9BWU0 796 aaKnown RBP14.81□□□□□ -0.04
LIMCH1-205ENST00000503057 CHMP7Q8WUX9 453 aaPredicted RBP14.8□□□□□ -0.04
LIMCH1-205ENST00000503057 RAPGEF2Q9Y4G8 1499 aa14.8□□□□□ -0.04
LIMCH1-205ENST00000503057 RUSC2Q8N2Y8 1516 aa14.8□□□□□ -0.04
LIMCH1-205ENST00000503057 FKBP8Q14318 412 aa14.77□□□□□ -0.05
LIMCH1-205ENST00000503057 RRP7BPQ9NSQ0 103 aa14.76□□□□□ -0.05
LIMCH1-205ENST00000503057 CADPSQ9ULU8 1353 aa14.75□□□□□ -0.05
LIMCH1-205ENST00000503057 HNRNPUQ00839 825 aaKnown RBP eCLIP14.75□□□□□ -0.05
LIMCH1-205ENST00000503057 ARHGAP35Q9NRY4 1499 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms