RNA–Protein interactions for RNA: ENST00000495693.1

EPHA4-213, Transcript of EPH receptor A4, humanhuman

TSL 3

Gene EPHA4, Length 588 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-213ENST00000495693 MKRN3Q13064 507 aaKnown RBP13.48□□□□□ -0.25
EPHA4-213ENST00000495693 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
EPHA4-213ENST00000495693 ILDR1Q86SU0 546 aaPredicted RBP13.47□□□□□ -0.25
EPHA4-213ENST00000495693 STK24Q9Y6E0 443 aa13.45□□□□□ -0.26
EPHA4-213ENST00000495693 PCGF6Q9BYE7 350 aa13.44□□□□□ -0.26
EPHA4-213ENST00000495693 DNAJC5Q9H3Z4 198 aa13.44□□□□□ -0.26
EPHA4-213ENST00000495693 POTEFA5A3E0 1075 aa13.43□□□□□ -0.26
EPHA4-213ENST00000495693 ERICH3Q5RHP9 1530 aa13.43□□□□□ -0.26
EPHA4-213ENST00000495693 CEP162Q5TB80 1403 aa13.42□□□□□ -0.26
EPHA4-213ENST00000495693 SOX12O15370 315 aa13.42□□□□□ -0.26
EPHA4-213ENST00000495693 EFCAB3Q8N7B9 438 aa13.42□□□□□ -0.26
EPHA4-213ENST00000495693 OCEL1Q9H607 264 aa13.42□□□□□ -0.26
EPHA4-213ENST00000495693 KIF27Q86VH2 1401 aa13.41□□□□□ -0.26
EPHA4-213ENST00000495693 CUX1P39880 1505 aa13.41□□□□□ -0.26
EPHA4-213ENST00000495693 SEC24BO95487 1268 aa13.41□□□□□ -0.26
EPHA4-213ENST00000495693 COLQQ9Y215 455 aaPredicted RBP13.41□□□□□ -0.26
EPHA4-213ENST00000495693 CHGAP10645 457 aaKnown RBP13.4□□□□□ -0.26
EPHA4-213ENST00000495693 LAMC3Q9Y6N6 1575 aa13.4□□□□□ -0.26
EPHA4-213ENST00000495693 PLCG2P16885 1265 aa13.39□□□□□ -0.27
EPHA4-213ENST00000495693 UBTFP17480 764 aaKnown RBP13.38□□□□□ -0.27
EPHA4-213ENST00000495693 PDCD7Q8N8D1 485 aaKnown RBP13.37□□□□□ -0.27
EPHA4-213ENST00000495693 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.37□□□□□ -0.27
EPHA4-213ENST00000495693 RUSC2Q8N2Y8 1516 aa13.37□□□□□ -0.27
EPHA4-213ENST00000495693 LHX8Q68G74 356 aa13.35□□□□□ -0.27
EPHA4-213ENST00000495693 HRCP23327 699 aa13.34□□□□□ -0.27
EPHA4-213ENST00000495693 FANCD2Q9BXW9 1451 aa13.34□□□□□ -0.27
EPHA4-213ENST00000495693 POTEB2H3BUK9 544 aa13.33□□□□□ -0.28
EPHA4-213ENST00000495693 PRXQ9BXM0 1461 aa13.32□□□□□ -0.28
EPHA4-213ENST00000495693 DNMBPQ6XZF7 1577 aa13.32□□□□□ -0.28
EPHA4-213ENST00000495693 NLRP6P59044 892 aa13.31□□□□□ -0.28
EPHA4-213ENST00000495693 FBXO22Q8NEZ5 403 aa13.3□□□□□ -0.28
EPHA4-213ENST00000495693 MFRPQ9BY79 579 aa13.3□□□□□ -0.28
EPHA4-213ENST00000495693 ZEB1P37275 1124 aaPredicted RBP13.29□□□□□ -0.28
EPHA4-213ENST00000495693 PHF8Q9UPP1 1060 aa13.29□□□□□ -0.28
EPHA4-213ENST00000495693 PDS5BQ9NTI5 1447 aa13.29□□□□□ -0.28
EPHA4-213ENST00000495693 CLIP1P30622 1438 aa13.28□□□□□ -0.28
EPHA4-213ENST00000495693 POTEJP0CG39 1038 aa13.26□□□□□ -0.29
EPHA4-213ENST00000495693 FGD5Q6ZNL6 1462 aa13.26□□□□□ -0.29
EPHA4-213ENST00000495693 MS4A4AQ96JQ5 239 aa13.26□□□□□ -0.29
EPHA4-213ENST00000495693 RAPGEF2Q9Y4G8 1499 aa13.26□□□□□ -0.29
EPHA4-213ENST00000495693 L3MBTL3Q96JM7 780 aaPredicted RBP13.25□□□□□ -0.29
EPHA4-213ENST00000495693 VPS8Q8N3P4 1428 aa13.24□□□□□ -0.29
EPHA4-213ENST00000495693 NKX1-1Q15270 411 aaPredicted RBP13.24□□□□□ -0.29
EPHA4-213ENST00000495693 MAMSTRQ6ZN01 415 aa13.24□□□□□ -0.29
EPHA4-213ENST00000495693 CUX2O14529 1486 aa13.23□□□□□ -0.29
EPHA4-213ENST00000495693 RYDENQ9NUL5 291 aaKnown RBP13.22□□□□□ -0.29
EPHA4-213ENST00000495693 DPY19L2Q6NUT2 758 aa13.21□□□□□ -0.29
EPHA4-213ENST00000495693 BBXQ8WY36 941 aaPredicted RBP13.21□□□□□ -0.29
EPHA4-213ENST00000495693 ABCA10Q8WWZ4 1543 aa13.21□□□□□ -0.29
EPHA4-213ENST00000495693 TOPBP1Q92547 1522 aa13.21□□□□□ -0.29
EPHA4-213ENST00000495693 CUL7Q14999 1698 aa13.18□□□□□ -0.3
EPHA4-213ENST00000495693 TMEM121BQ9BXQ6 578 aaPredicted RBP13.18□□□□□ -0.3
EPHA4-213ENST00000495693 SCUBE2Q9NQ36 999 aa13.18□□□□□ -0.3
EPHA4-213ENST00000495693 BOLA1Q9Y3E2 137 aa13.18□□□□□ -0.3
EPHA4-213ENST00000495693 OTUD5Q96G74 571 aa13.17□□□□□ -0.3
EPHA4-213ENST00000495693 POLA1P09884 1462 aaPredicted RBP13.16□□□□□ -0.3
EPHA4-213ENST00000495693 IGF1RP08069 1367 aa13.15□□□□□ -0.3
EPHA4-213ENST00000495693 CARMIL1Q5VZK9 1371 aa13.14□□□□□ -0.31
EPHA4-213ENST00000495693 NESP48681 1621 aa13.13□□□□□ -0.31
EPHA4-213ENST00000495693 G3V3G9 751 aa13.12□□□□□ -0.31
EPHA4-213ENST00000495693 GTPBP6O43824 516 aaPredicted RBP13.12□□□□□ -0.31
EPHA4-213ENST00000495693 WDR97A6NE52 1622 aa13.11□□□□□ -0.31
EPHA4-213ENST00000495693 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
EPHA4-213ENST00000495693 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
EPHA4-213ENST00000495693 C3orf67Q6ZVT6 689 aa13.08□□□□□ -0.32
EPHA4-213ENST00000495693 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.08□□□□□ -0.32
EPHA4-213ENST00000495693 PPP1R37O75864 691 aa13.07□□□□□ -0.32
EPHA4-213ENST00000495693 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.07□□□□□ -0.32
EPHA4-213ENST00000495693 EFCAB5A4FU69 1503 aa13.07□□□□□ -0.32
EPHA4-213ENST00000495693 ABCA5Q8WWZ7 1642 aa13.06□□□□□ -0.32
EPHA4-213ENST00000495693 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
EPHA4-213ENST00000495693 FHAD1B1AJZ9 1412 aa13.05□□□□□ -0.32
EPHA4-213ENST00000495693 ARAP1Q96P48 1450 aa13.05□□□□□ -0.32
EPHA4-213ENST00000495693 MRC2Q9UBG0 1479 aa13.05□□□□□ -0.32
EPHA4-213ENST00000495693 MAP3K1Q13233 1512 aa13.05□□□□□ -0.32
EPHA4-213ENST00000495693 RAD54L2Q9Y4B4 1467 aa13.03□□□□□ -0.32
EPHA4-213ENST00000495693 GAPVD1Q14C86 1478 aa13.02□□□□□ -0.33
EPHA4-213ENST00000495693 ARHGAP35Q9NRY4 1499 aa13.02□□□□□ -0.33
EPHA4-213ENST00000495693 CTTNBP2Q8WZ74 1663 aa13.01□□□□□ -0.33
EPHA4-213ENST00000495693 SPRYD3Q8NCJ5 442 aa13□□□□□ -0.33
EPHA4-213ENST00000495693 SLAIN1Q8ND83 568 aa12.99□□□□□ -0.33
EPHA4-213ENST00000495693 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
EPHA4-213ENST00000495693 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
EPHA4-213ENST00000495693 WDR62O43379 1518 aa12.97□□□□□ -0.33
EPHA4-213ENST00000495693 PPARGC1BQ86YN6 1023 aaKnown RBP12.95□□□□□ -0.34
EPHA4-213ENST00000495693 AQRO60306 1485 aaKnown RBP eCLIP12.95□□□□□ -0.34
EPHA4-213ENST00000495693 FMN1Q68DA7 1419 aa12.94□□□□□ -0.34
EPHA4-213ENST00000495693 TMEM92Q6UXU6 159 aa12.93□□□□□ -0.34
EPHA4-213ENST00000495693 PBRM1Q86U86 1689 aa12.93□□□□□ -0.34
EPHA4-213ENST00000495693 FYCO1Q9BQS8 1478 aa12.92□□□□□ -0.34
EPHA4-213ENST00000495693 GRIN2BQ13224 1484 aa12.91□□□□□ -0.34
EPHA4-213ENST00000495693 KIF3CO14782 793 aa12.91□□□□□ -0.34
EPHA4-213ENST00000495693 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
EPHA4-213ENST00000495693 PAXIP1Q6ZW49 1069 aaPredicted RBP12.91□□□□□ -0.34
EPHA4-213ENST00000495693 CCER1Q8TC90 406 aaPredicted RBP12.91□□□□□ -0.34
EPHA4-213ENST00000495693 TIAM1Q13009 1591 aa12.9□□□□□ -0.34
EPHA4-213ENST00000495693 ERCC6Q03468 1493 aa12.9□□□□□ -0.34
EPHA4-213ENST00000495693 TDRD9Q8NDG6 1382 aaKnown RBP12.89□□□□□ -0.35
EPHA4-213ENST00000495693 THOC2Q8NI27 1593 aaKnown RBP12.89□□□□□ -0.35
EPHA4-213ENST00000495693 CFAP43Q8NDM7 1665 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms