RNA–Protein interactions for RNA: ENST00000495693.1

EPHA4-213, Transcript of EPH receptor A4, humanhuman

TSL 3

Gene EPHA4, Length 588 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-213ENST00000495693 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
EPHA4-213ENST00000495693 CHIC1Q5VXU3 224 aa27.18■■□□□ 1.94
EPHA4-213ENST00000495693 PHF23Q9BUL5 403 aaPredicted RBP23.85■■□□□ 1.41
EPHA4-213ENST00000495693 SENP3Q9H4L4 574 aaPredicted RBP23.78■■□□□ 1.4
EPHA4-213ENST00000495693 FOXD1Q16676 465 aa22.03■■□□□ 1.12
EPHA4-213ENST00000495693 PLPPR3Q6T4P5 718 aa22.02■■□□□ 1.12
EPHA4-213ENST00000495693 PPP6R1Q9UPN7 881 aa21.06■□□□□ 0.96
EPHA4-213ENST00000495693 ADRA2BP18089 450 aa21■□□□□ 0.95
EPHA4-213ENST00000495693 PIAS4Q8N2W9 510 aaPredicted RBP20.72■□□□□ 0.91
EPHA4-213ENST00000495693 MSH5O43196 834 aa20.44■□□□□ 0.86
EPHA4-213ENST00000495693 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
EPHA4-213ENST00000495693 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
EPHA4-213ENST00000495693 MAPK8IP2Q13387 824 aaPredicted RBP19.08■□□□□ 0.64
EPHA4-213ENST00000495693 DMRT2Q9Y5R5 561 aa18.97■□□□□ 0.63
EPHA4-213ENST00000495693 CNKSR2Q8WXI2 1034 aa18.87■□□□□ 0.61
EPHA4-213ENST00000495693 NCBP3Q53F19 620 aaKnown RBP18.83■□□□□ 0.6
EPHA4-213ENST00000495693 POTEDQ86YR6 584 aa18.8■□□□□ 0.6
EPHA4-213ENST00000495693 KCNA4P22459 653 aa18.7■□□□□ 0.58
EPHA4-213ENST00000495693 NISCHQ9Y2I1 1504 aa18.66■□□□□ 0.58
EPHA4-213ENST00000495693 RNF216Q9NWF9 866 aaPredicted RBP18.56■□□□□ 0.56
EPHA4-213ENST00000495693 HOXD11P31277 338 aaPredicted RBP18.54■□□□□ 0.56
EPHA4-213ENST00000495693 NPM3O75607 178 aaKnown RBP18.52■□□□□ 0.56
EPHA4-213ENST00000495693 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
EPHA4-213ENST00000495693 DCAF8L1A6NGE4 600 aa17.99■□□□□ 0.47
EPHA4-213ENST00000495693 SLC4A1APQ9BWU0 796 aaKnown RBP17.79■□□□□ 0.44
EPHA4-213ENST00000495693 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.4
EPHA4-213ENST00000495693 SLC4A2P04920 1241 aa17.53■□□□□ 0.4
EPHA4-213ENST00000495693 RNF39Q9H2S5 420 aa17.49■□□□□ 0.39
EPHA4-213ENST00000495693 C1QBPQ07021 282 aaKnown RBP17.3■□□□□ 0.36
EPHA4-213ENST00000495693 FOXD4L1Q9NU39 408 aa17.3■□□□□ 0.36
EPHA4-213ENST00000495693 U3KPZ7 1027 aaPredicted RBP17.29■□□□□ 0.36
EPHA4-213ENST00000495693 ZBTB22O15209 634 aa17.21■□□□□ 0.35
EPHA4-213ENST00000495693 MYCNP04198 464 aaPredicted RBP17.15■□□□□ 0.34
EPHA4-213ENST00000495693 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.1■□□□□ 0.33
EPHA4-213ENST00000495693 HNRNPUL2Q1KMD3 747 aaKnown RBP17.1■□□□□ 0.33
EPHA4-213ENST00000495693 CACNB1Q02641 598 aaPredicted RBP17.05■□□□□ 0.32
EPHA4-213ENST00000495693 SAMD1Q6SPF0 538 aaPredicted RBP17.02■□□□□ 0.32
EPHA4-213ENST00000495693 EHMT2Q96KQ7 1210 aa17.02■□□□□ 0.32
EPHA4-213ENST00000495693 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
EPHA4-213ENST00000495693 APLP2Q06481 763 aa16.96■□□□□ 0.31
EPHA4-213ENST00000495693 SPINK5Q9NQ38 1064 aaPredicted RBP16.81■□□□□ 0.28
EPHA4-213ENST00000495693 ATXN8OSP0DMR3 200 aa16.79■□□□□ 0.28
EPHA4-213ENST00000495693 CAPN15O75808 1086 aa16.74■□□□□ 0.27
EPHA4-213ENST00000495693 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.27
EPHA4-213ENST00000495693 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
EPHA4-213ENST00000495693 TRHP20396 242 aaPredicted RBP16.61■□□□□ 0.25
EPHA4-213ENST00000495693 DSG3P32926 999 aa16.56■□□□□ 0.24
EPHA4-213ENST00000495693 ABCB7O75027 752 aa16.38■□□□□ 0.21
EPHA4-213ENST00000495693 POLA2Q14181 598 aa16.35■□□□□ 0.21
EPHA4-213ENST00000495693 CCDC180Q9P1Z9 1646 aa16.27■□□□□ 0.2
EPHA4-213ENST00000495693 ZBTB12Q9Y330 459 aaPredicted RBP16.18■□□□□ 0.18
EPHA4-213ENST00000495693 FBLN2P98095 1184 aa15.99■□□□□ 0.15
EPHA4-213ENST00000495693 MKRN4PQ13434 485 aaPredicted RBP15.93■□□□□ 0.14
EPHA4-213ENST00000495693 RBM42Q9BTD8 480 aaKnown RBP15.83■□□□□ 0.12
EPHA4-213ENST00000495693 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
EPHA4-213ENST00000495693 ZCCHC6Q5VYS8 1495 aaKnown RBP15.75■□□□□ 0.11
EPHA4-213ENST00000495693 SPDYE2BA6NHP3 402 aa15.7■□□□□ 0.1
EPHA4-213ENST00000495693 SPDYE6P0CI01 402 aa15.7■□□□□ 0.1
EPHA4-213ENST00000495693 SPDYE2Q495Y8 402 aa15.7■□□□□ 0.1
EPHA4-213ENST00000495693 AKT1S1Q96B36 256 aa15.6■□□□□ 0.09
EPHA4-213ENST00000495693 SSUH2Q9Y2M2 353 aa15.58■□□□□ 0.08
EPHA4-213ENST00000495693 DCAF1Q9Y4B6 1507 aa15.57■□□□□ 0.08
EPHA4-213ENST00000495693 ZNF692Q9BU19 519 aaPredicted RBP15.55■□□□□ 0.08
EPHA4-213ENST00000495693 SPDYE4A6NLX3 237 aa15.5■□□□□ 0.07
EPHA4-213ENST00000495693 REM2Q8IYK8 340 aaPredicted RBP15.4■□□□□ 0.06
EPHA4-213ENST00000495693 PROM2Q8N271 834 aa15.34■□□□□ 0.05
EPHA4-213ENST00000495693 FKBP8Q14318 412 aa15.33■□□□□ 0.04
EPHA4-213ENST00000495693 PABPN1Q86U42 306 aaKnown RBP eCLIP15.33■□□□□ 0.04
EPHA4-213ENST00000495693 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.04
EPHA4-213ENST00000495693 SPDYE1Q8NFV5 336 aaPredicted RBP15.25■□□□□ 0.03
EPHA4-213ENST00000495693 PITPNM1O00562 1244 aa15.22■□□□□ 0.03
EPHA4-213ENST00000495693 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
EPHA4-213ENST00000495693 DCAF8L2P0C7V8 631 aa15.18■□□□□ 0.02
EPHA4-213ENST00000495693 CHRDL2Q6WN34 429 aa15.18■□□□□ 0.02
EPHA4-213ENST00000495693 STAG3Q9UJ98 1225 aa15.13■□□□□ 0.01
EPHA4-213ENST00000495693 NACADO15069 1562 aa15.08■□□□□ 0
EPHA4-213ENST00000495693 CLEC11AQ9Y240 323 aa15.08■□□□□ 0
EPHA4-213ENST00000495693 FXR2P51116 673 aaKnown RBP eCLIP15.01□□□□□ -0.01
EPHA4-213ENST00000495693 PRR29P0C7W0 189 aa14.98□□□□□ -0.01
EPHA4-213ENST00000495693 PIP4P2Q8N4L2 257 aa14.94□□□□□ -0.02
EPHA4-213ENST00000495693 FBXO3Q9UK99 471 aa14.93□□□□□ -0.02
EPHA4-213ENST00000495693 ABCC9O60706 1549 aa14.92□□□□□ -0.02
EPHA4-213ENST00000495693 RB1CC1Q8TDY2 1594 aa14.88□□□□□ -0.03
EPHA4-213ENST00000495693 POTEHQ6S545 545 aa14.86□□□□□ -0.03
EPHA4-213ENST00000495693 SCRIBQ14160 1630 aa14.82□□□□□ -0.04
EPHA4-213ENST00000495693 PRKAR2AP13861 404 aaKnown RBP14.82□□□□□ -0.04
EPHA4-213ENST00000495693 SUPT5HO00267 1087 aaKnown RBP14.81□□□□□ -0.04
EPHA4-213ENST00000495693 CREBZFQ9NS37 354 aa14.79□□□□□ -0.04
EPHA4-213ENST00000495693 CHADLQ6NUI6 762 aa14.73□□□□□ -0.05
EPHA4-213ENST00000495693 VASPP50552 380 aaPredicted RBP14.68□□□□□ -0.06
EPHA4-213ENST00000495693 MIER1Q8N108 512 aa14.68□□□□□ -0.06
EPHA4-213ENST00000495693 PLEKHG5O94827 1062 aa14.67□□□□□ -0.06
EPHA4-213ENST00000495693 MNX1P50219 401 aaPredicted RBP14.66□□□□□ -0.06
EPHA4-213ENST00000495693 FARP1Q9Y4F1 1045 aaPredicted RBP14.66□□□□□ -0.06
EPHA4-213ENST00000495693 PLCD3Q8N3E9 789 aa14.64□□□□□ -0.07
EPHA4-213ENST00000495693 ZBTB47Q9UFB7 747 aaPredicted RBP14.59□□□□□ -0.07
EPHA4-213ENST00000495693 NPM1P06748 294 aaKnown RBP eCLIP14.56□□□□□ -0.08
EPHA4-213ENST00000495693 RSF1Q96T23 1441 aaPredicted RBP14.52□□□□□ -0.08
EPHA4-213ENST00000495693 C19orf67A6NJJ6 358 aa14.5□□□□□ -0.09
EPHA4-213ENST00000495693 BAZ1AQ9NRL2 1556 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms