RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 SCUBE2Q9NQ36 999 aa15.94■□□□□ 0.14
PRPF3-206ENST00000493553 CC2D2AQ9P2K1 1620 aa15.94■□□□□ 0.14
PRPF3-206ENST00000493553 STK25O00506 426 aa15.92■□□□□ 0.14
PRPF3-206ENST00000493553 STK24Q9Y6E0 443 aa15.91■□□□□ 0.14
PRPF3-206ENST00000493553 SOX12O15370 315 aa15.9■□□□□ 0.14
PRPF3-206ENST00000493553 CADPSQ9ULU8 1353 aa15.89■□□□□ 0.13
PRPF3-206ENST00000493553 L3MBTL3Q96JM7 780 aaPredicted RBP15.85■□□□□ 0.13
PRPF3-206ENST00000493553 TOP2BQ02880 1626 aa15.85■□□□□ 0.13
PRPF3-206ENST00000493553 SYNJ1O43426 1573 aa15.83■□□□□ 0.12
PRPF3-206ENST00000493553 BIVM-ERCC5R4GMW8 1640 aa15.8■□□□□ 0.12
PRPF3-206ENST00000493553 SOGA1O94964 1423 aa15.8■□□□□ 0.12
PRPF3-206ENST00000493553 DPY19L2Q6NUT2 758 aa15.8■□□□□ 0.12
PRPF3-206ENST00000493553 HS6ST3Q8IZP7 471 aa15.8■□□□□ 0.12
PRPF3-206ENST00000493553 TNIKQ9UKE5 1360 aa15.79■□□□□ 0.12
PRPF3-206ENST00000493553 PRDM2Q13029 1718 aa15.78■□□□□ 0.12
PRPF3-206ENST00000493553 PHF8Q9UPP1 1060 aa15.78■□□□□ 0.12
PRPF3-206ENST00000493553 AMER1Q5JTC6 1135 aaPredicted RBP15.77■□□□□ 0.12
PRPF3-206ENST00000493553 GOLGA3Q08378 1498 aa15.77■□□□□ 0.11
PRPF3-206ENST00000493553 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.11
PRPF3-206ENST00000493553 NLRP6P59044 892 aa15.76■□□□□ 0.11
PRPF3-206ENST00000493553 MS4A4AQ96JQ5 239 aa15.75■□□□□ 0.11
PRPF3-206ENST00000493553 BOLA1Q9Y3E2 137 aa15.74■□□□□ 0.11
PRPF3-206ENST00000493553 FBXO22Q8NEZ5 403 aa15.73■□□□□ 0.11
PRPF3-206ENST00000493553 MFRPQ9BY79 579 aa15.73■□□□□ 0.11
PRPF3-206ENST00000493553 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.73■□□□□ 0.11
PRPF3-206ENST00000493553 CHGAP10645 457 aaKnown RBP15.72■□□□□ 0.11
PRPF3-206ENST00000493553 C3orf67Q6ZVT6 689 aa15.71■□□□□ 0.11
PRPF3-206ENST00000493553 KIF21BO75037 1637 aa15.71■□□□□ 0.11
PRPF3-206ENST00000493553 KIF27Q86VH2 1401 aa15.7■□□□□ 0.1
PRPF3-206ENST00000493553 G3V3G9 751 aa15.7■□□□□ 0.1
PRPF3-206ENST00000493553 TRIM26Q12899 539 aaPredicted RBP15.7■□□□□ 0.1
PRPF3-206ENST00000493553 SLAIN1Q8ND83 568 aa15.7■□□□□ 0.1
PRPF3-206ENST00000493553 CUX1P39880 1505 aa15.69■□□□□ 0.1
PRPF3-206ENST00000493553 TMEM121BQ9BXQ6 578 aaPredicted RBP15.69■□□□□ 0.1
PRPF3-206ENST00000493553 LAMC3Q9Y6N6 1575 aa15.68■□□□□ 0.1
PRPF3-206ENST00000493553 DNAJC5Q9H3Z4 198 aa15.68■□□□□ 0.1
PRPF3-206ENST00000493553 UBTFP17480 764 aaKnown RBP15.67■□□□□ 0.1
PRPF3-206ENST00000493553 FANCD2Q9BXW9 1451 aa15.66■□□□□ 0.1
PRPF3-206ENST00000493553 RTN4Q9NQC3 1192 aaKnown RBP15.66■□□□□ 0.1
PRPF3-206ENST00000493553 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
PRPF3-206ENST00000493553 CEP162Q5TB80 1403 aa15.64■□□□□ 0.09
PRPF3-206ENST00000493553 PDS5BQ9NTI5 1447 aa15.64■□□□□ 0.09
PRPF3-206ENST00000493553 MICALL2Q8IY33 904 aa15.62■□□□□ 0.09
PRPF3-206ENST00000493553 ERICH3Q5RHP9 1530 aa15.62■□□□□ 0.09
PRPF3-206ENST00000493553 PCGF6Q9BYE7 350 aa15.6■□□□□ 0.09
PRPF3-206ENST00000493553 PRXQ9BXM0 1461 aa15.58■□□□□ 0.08
PRPF3-206ENST00000493553 DNMBPQ6XZF7 1577 aa15.57■□□□□ 0.08
PRPF3-206ENST00000493553 NKX1-1Q15270 411 aaPredicted RBP15.54■□□□□ 0.08
PRPF3-206ENST00000493553 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.08
PRPF3-206ENST00000493553 CUX2O14529 1486 aa15.51■□□□□ 0.07
PRPF3-206ENST00000493553 CLIP1P30622 1438 aa15.51■□□□□ 0.07
PRPF3-206ENST00000493553 TOPBP1Q92547 1522 aa15.5■□□□□ 0.07
PRPF3-206ENST00000493553 RAPGEF2Q9Y4G8 1499 aa15.5■□□□□ 0.07
PRPF3-206ENST00000493553 SNPHO15079 494 aa15.49■□□□□ 0.07
PRPF3-206ENST00000493553 RYDENQ9NUL5 291 aaKnown RBP15.49■□□□□ 0.07
PRPF3-206ENST00000493553 FAM163AQ96GL9 167 aaPredicted RBP15.47■□□□□ 0.07
PRPF3-206ENST00000493553 ABCA10Q8WWZ4 1543 aa15.47■□□□□ 0.07
PRPF3-206ENST00000493553 IGF1RP08069 1367 aa15.47■□□□□ 0.07
PRPF3-206ENST00000493553 PPP1R37O75864 691 aa15.46■□□□□ 0.07
PRPF3-206ENST00000493553 NESP48681 1621 aa15.46■□□□□ 0.06
PRPF3-206ENST00000493553 LCE2DQ5TA82 110 aaPredicted RBP15.44■□□□□ 0.06
PRPF3-206ENST00000493553 TMEM92Q6UXU6 159 aa15.44■□□□□ 0.06
PRPF3-206ENST00000493553 POLA1P09884 1462 aaPredicted RBP15.43■□□□□ 0.06
PRPF3-206ENST00000493553 CARMIL1Q5VZK9 1371 aa15.42■□□□□ 0.06
PRPF3-206ENST00000493553 HRCP23327 699 aa15.41■□□□□ 0.06
PRPF3-206ENST00000493553 VPS8Q8N3P4 1428 aa15.41■□□□□ 0.06
PRPF3-206ENST00000493553 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
PRPF3-206ENST00000493553 GTPBP6O43824 516 aaPredicted RBP15.37■□□□□ 0.05
PRPF3-206ENST00000493553 ZEB1P37275 1124 aaPredicted RBP15.37■□□□□ 0.05
PRPF3-206ENST00000493553 ST18O60284 1047 aa15.36■□□□□ 0.05
PRPF3-206ENST00000493553 MRC2Q9UBG0 1479 aa15.34■□□□□ 0.05
PRPF3-206ENST00000493553 CUL7Q14999 1698 aa15.33■□□□□ 0.04
PRPF3-206ENST00000493553 BBXQ8WY36 941 aaPredicted RBP15.33■□□□□ 0.04
PRPF3-206ENST00000493553 KIF3CO14782 793 aa15.32■□□□□ 0.04
PRPF3-206ENST00000493553 HOXB3P14651 431 aaPredicted RBP15.32■□□□□ 0.04
PRPF3-206ENST00000493553 POTEMA6NI47 508 aa15.31■□□□□ 0.04
PRPF3-206ENST00000493553 POTEGQ6S5H5 508 aa15.31■□□□□ 0.04
PRPF3-206ENST00000493553 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
PRPF3-206ENST00000493553 DOK7Q18PE1 504 aa15.29■□□□□ 0.04
PRPF3-206ENST00000493553 C2orf72A6NCS6 295 aa15.28■□□□□ 0.04
PRPF3-206ENST00000493553 TMC2Q8TDI7 906 aa15.27■□□□□ 0.04
PRPF3-206ENST00000493553 WDR97A6NE52 1622 aa15.27■□□□□ 0.03
PRPF3-206ENST00000493553 GAPVD1Q14C86 1478 aa15.27■□□□□ 0.03
PRPF3-206ENST00000493553 KIF21AQ7Z4S6 1674 aa15.25■□□□□ 0.03
PRPF3-206ENST00000493553 IFT140Q96RY7 1462 aa15.24■□□□□ 0.03
PRPF3-206ENST00000493553 ABCA5Q8WWZ7 1642 aa15.23■□□□□ 0.03
PRPF3-206ENST00000493553 ZNF710Q8N1W2 664 aa15.22■□□□□ 0.03
PRPF3-206ENST00000493553 FHAD1B1AJZ9 1412 aa15.22■□□□□ 0.03
PRPF3-206ENST00000493553 ARAP1Q96P48 1450 aa15.21■□□□□ 0.03
PRPF3-206ENST00000493553 RIMBP2O15034 1052 aa15.21■□□□□ 0.03
PRPF3-206ENST00000493553 EFCAB5A4FU69 1503 aa15.21■□□□□ 0.03
PRPF3-206ENST00000493553 WDR62O43379 1518 aa15.21■□□□□ 0.03
PRPF3-206ENST00000493553 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
PRPF3-206ENST00000493553 ARHGAP35Q9NRY4 1499 aa15.2■□□□□ 0.02
PRPF3-206ENST00000493553 TARBP1Q13395 1621 aaKnown RBP15.19■□□□□ 0.02
PRPF3-206ENST00000493553 ZSWIM6Q9HCJ5 1215 aa15.19■□□□□ 0.02
PRPF3-206ENST00000493553 GPHNQ9NQX3 736 aaPredicted RBP15.19■□□□□ 0.02
PRPF3-206ENST00000493553 ERCC6Q03468 1493 aa15.19■□□□□ 0.02
PRPF3-206ENST00000493553 MAP3K1Q13233 1512 aa15.18■□□□□ 0.02
PRPF3-206ENST00000493553 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms