RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 AEBP2Q6ZN18 517 aaPredicted RBP33.69■■■□□ 2.98
PRPF3-206ENST00000493553 CHIC1Q5VXU3 224 aa32.58■■■□□ 2.81
PRPF3-206ENST00000493553 SENP3Q9H4L4 574 aaPredicted RBP28.71■■■□□ 2.19
PRPF3-206ENST00000493553 PHF23Q9BUL5 403 aaPredicted RBP28.58■■■□□ 2.17
PRPF3-206ENST00000493553 FOXD1Q16676 465 aa26.65■■□□□ 1.86
PRPF3-206ENST00000493553 PLPPR3Q6T4P5 718 aa26.29■■□□□ 1.8
PRPF3-206ENST00000493553 PPP6R1Q9UPN7 881 aa25.32■■□□□ 1.64
PRPF3-206ENST00000493553 ADRA2BP18089 450 aa25.27■■□□□ 1.64
PRPF3-206ENST00000493553 PIAS4Q8N2W9 510 aaPredicted RBP25.03■■□□□ 1.6
PRPF3-206ENST00000493553 MSH5O43196 834 aa24.77■■□□□ 1.56
PRPF3-206ENST00000493553 SCAF1Q9H7N4 1312 aaKnown RBP23.19■■□□□ 1.3
PRPF3-206ENST00000493553 POTEDQ86YR6 584 aa23.18■■□□□ 1.3
PRPF3-206ENST00000493553 PPP4R3CPQ6ZMV5 832 aa23.09■■□□□ 1.29
PRPF3-206ENST00000493553 MAPK8IP2Q13387 824 aaPredicted RBP23.03■■□□□ 1.28
PRPF3-206ENST00000493553 DMRT2Q9Y5R5 561 aa22.85■■□□□ 1.25
PRPF3-206ENST00000493553 CNKSR2Q8WXI2 1034 aa22.56■■□□□ 1.2
PRPF3-206ENST00000493553 NCBP3Q53F19 620 aaKnown RBP22.41■■□□□ 1.18
PRPF3-206ENST00000493553 HOXD11P31277 338 aaPredicted RBP22.24■■□□□ 1.15
PRPF3-206ENST00000493553 RNF216Q9NWF9 866 aaPredicted RBP22.22■■□□□ 1.15
PRPF3-206ENST00000493553 KCNA4P22459 653 aa22.11■■□□□ 1.13
PRPF3-206ENST00000493553 NPM3O75607 178 aaKnown RBP22.05■■□□□ 1.12
PRPF3-206ENST00000493553 NISCHQ9Y2I1 1504 aa21.84■■□□□ 1.09
PRPF3-206ENST00000493553 DCAF8L1A6NGE4 600 aa21.79■■□□□ 1.08
PRPF3-206ENST00000493553 DNAJC5BQ9UF47 199 aa21.58■■□□□ 1.05
PRPF3-206ENST00000493553 RNF39Q9H2S5 420 aa21.18■□□□□ 0.98
PRPF3-206ENST00000493553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.14■□□□□ 0.971e-6■■□□□ 12.2
PRPF3-206ENST00000493553 SLC4A1APQ9BWU0 796 aaKnown RBP20.99■□□□□ 0.95
PRPF3-206ENST00000493553 C1QBPQ07021 282 aaKnown RBP20.92■□□□□ 0.94
PRPF3-206ENST00000493553 SLC4A2P04920 1241 aa20.91■□□□□ 0.94
PRPF3-206ENST00000493553 CACNB1Q02641 598 aaPredicted RBP20.86■□□□□ 0.93
PRPF3-206ENST00000493553 U3KPZ7 1027 aaPredicted RBP20.78■□□□□ 0.92
PRPF3-206ENST00000493553 FOXD4L1Q9NU39 408 aa20.48■□□□□ 0.87
PRPF3-206ENST00000493553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.43■□□□□ 0.86
PRPF3-206ENST00000493553 HNRNPUL2Q1KMD3 747 aaKnown RBP20.43■□□□□ 0.86
PRPF3-206ENST00000493553 MYCNP04198 464 aaPredicted RBP20.41■□□□□ 0.86
PRPF3-206ENST00000493553 ZBTB22O15209 634 aa20.34■□□□□ 0.85
PRPF3-206ENST00000493553 SAMD1Q6SPF0 538 aaPredicted RBP20.33■□□□□ 0.85
PRPF3-206ENST00000493553 APLP2Q06481 763 aa20.31■□□□□ 0.84
PRPF3-206ENST00000493553 SPINK5Q9NQ38 1064 aaPredicted RBP20.27■□□□□ 0.84
PRPF3-206ENST00000493553 CAPN15O75808 1086 aa20.21■□□□□ 0.83
PRPF3-206ENST00000493553 ZNF219Q9P2Y4 722 aaPredicted RBP20.07■□□□□ 0.8
PRPF3-206ENST00000493553 TRHP20396 242 aaPredicted RBP20.02■□□□□ 0.8
PRPF3-206ENST00000493553 DSG3P32926 999 aa20■□□□□ 0.79
PRPF3-206ENST00000493553 CSRNP3Q8WYN3 585 aa19.9■□□□□ 0.78
PRPF3-206ENST00000493553 EHMT2Q96KQ7 1210 aa19.9■□□□□ 0.78
PRPF3-206ENST00000493553 ATXN8OSP0DMR3 200 aa19.86■□□□□ 0.77
PRPF3-206ENST00000493553 ATF5Q9Y2D1 282 aaPredicted RBP19.84■□□□□ 0.77
PRPF3-206ENST00000493553 ABCB7O75027 752 aa19.78■□□□□ 0.76
PRPF3-206ENST00000493553 POLA2Q14181 598 aa19.63■□□□□ 0.73
PRPF3-206ENST00000493553 ZBTB12Q9Y330 459 aaPredicted RBP19.35■□□□□ 0.69
PRPF3-206ENST00000493553 RBM42Q9BTD8 480 aaKnown RBP19.1■□□□□ 0.65
PRPF3-206ENST00000493553 FBLN2P98095 1184 aa19.07■□□□□ 0.64
PRPF3-206ENST00000493553 MKRN4PQ13434 485 aaPredicted RBP18.98■□□□□ 0.63
PRPF3-206ENST00000493553 OSCARQ8IYS5 282 aa18.97■□□□□ 0.63
PRPF3-206ENST00000493553 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
PRPF3-206ENST00000493553 SPDYE2BA6NHP3 402 aa18.78■□□□□ 0.6
PRPF3-206ENST00000493553 SPDYE6P0CI01 402 aa18.78■□□□□ 0.6
PRPF3-206ENST00000493553 SPDYE2Q495Y8 402 aa18.78■□□□□ 0.6
PRPF3-206ENST00000493553 AKT1S1Q96B36 256 aa18.78■□□□□ 0.6
PRPF3-206ENST00000493553 ZNF692Q9BU19 519 aaPredicted RBP18.6■□□□□ 0.57
PRPF3-206ENST00000493553 SSUH2Q9Y2M2 353 aa18.59■□□□□ 0.57
PRPF3-206ENST00000493553 REM2Q8IYK8 340 aaPredicted RBP18.57■□□□□ 0.56
PRPF3-206ENST00000493553 CHRDL2Q6WN34 429 aa18.43■□□□□ 0.54
PRPF3-206ENST00000493553 ZCCHC6Q5VYS8 1495 aaKnown RBP18.39■□□□□ 0.53
PRPF3-206ENST00000493553 SPDYE4A6NLX3 237 aa18.37■□□□□ 0.53
PRPF3-206ENST00000493553 PITPNM1O00562 1244 aa18.36■□□□□ 0.53
PRPF3-206ENST00000493553 PABPN1Q86U42 306 aaKnown RBP eCLIP18.34■□□□□ 0.53
PRPF3-206ENST00000493553 SPDYE1Q8NFV5 336 aaPredicted RBP18.3■□□□□ 0.52
PRPF3-206ENST00000493553 POTEHQ6S545 545 aa18.28■□□□□ 0.52
PRPF3-206ENST00000493553 DCAF1Q9Y4B6 1507 aa18.19■□□□□ 0.5
PRPF3-206ENST00000493553 CLEC11AQ9Y240 323 aa18.17■□□□□ 0.5
PRPF3-206ENST00000493553 PIP4P2Q8N4L2 257 aa18.12■□□□□ 0.49
PRPF3-206ENST00000493553 FXR2P51116 673 aaKnown RBP eCLIP18.11■□□□□ 0.49
PRPF3-206ENST00000493553 PROM2Q8N271 834 aa18.08■□□□□ 0.48
PRPF3-206ENST00000493553 STAG3Q9UJ98 1225 aa18.01■□□□□ 0.47
PRPF3-206ENST00000493553 FKBP8Q14318 412 aa18■□□□□ 0.47
PRPF3-206ENST00000493553 PRR29P0C7W0 189 aa17.99■□□□□ 0.47
PRPF3-206ENST00000493553 MYO15BQ96JP2 1530 aa17.94■□□□□ 0.46
PRPF3-206ENST00000493553 DCAF8L2P0C7V8 631 aa17.9■□□□□ 0.46
PRPF3-206ENST00000493553 PRKAR2AP13861 404 aaKnown RBP17.88■□□□□ 0.45
PRPF3-206ENST00000493553 SHROOM4Q9ULL8 1493 aa17.79■□□□□ 0.44
PRPF3-206ENST00000493553 CHADLQ6NUI6 762 aa17.76■□□□□ 0.43
PRPF3-206ENST00000493553 CREBZFQ9NS37 354 aa17.69■□□□□ 0.42
PRPF3-206ENST00000493553 NACADO15069 1562 aa17.67■□□□□ 0.42
PRPF3-206ENST00000493553 FARP1Q9Y4F1 1045 aaPredicted RBP17.62■□□□□ 0.41
PRPF3-206ENST00000493553 HAX1O00165 279 aa17.61■□□□□ 0.41
PRPF3-206ENST00000493553 ABCC9O60706 1549 aa17.6■□□□□ 0.41
PRPF3-206ENST00000493553 FBXO3Q9UK99 471 aa17.53■□□□□ 0.4
PRPF3-206ENST00000493553 C19orf67A6NJJ6 358 aa17.52■□□□□ 0.4
PRPF3-206ENST00000493553 MNX1P50219 401 aaPredicted RBP17.47■□□□□ 0.39
PRPF3-206ENST00000493553 MIER1Q8N108 512 aa17.44■□□□□ 0.38
PRPF3-206ENST00000493553 RB1CC1Q8TDY2 1594 aa17.44■□□□□ 0.38
PRPF3-206ENST00000493553 PLEKHG5O94827 1062 aa17.42■□□□□ 0.38
PRPF3-206ENST00000493553 EVX2Q03828 476 aa17.41■□□□□ 0.38
PRPF3-206ENST00000493553 SP7Q8TDD2 431 aaPredicted RBP17.41■□□□□ 0.38
PRPF3-206ENST00000493553 NPM1P06748 294 aaKnown RBP eCLIP17.4■□□□□ 0.38
PRPF3-206ENST00000493553 PLCD3Q8N3E9 789 aa17.38■□□□□ 0.37
PRPF3-206ENST00000493553 CD44P16070 742 aaKnown RBP17.36■□□□□ 0.37
PRPF3-206ENST00000493553 SUPT5HO00267 1087 aaKnown RBP17.34■□□□□ 0.37
PRPF3-206ENST00000493553 SCRIBQ14160 1630 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms