RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TMC1Q8TDI8 760 aa8.27□□□□□ -1.09
VPS13D-209ENST00000487188 WASHC2CQ9Y4E1 1318 aa8.27□□□□□ -1.09
VPS13D-209ENST00000487188 ABCA5Q8WWZ7 1642 aa8.26□□□□□ -1.09
VPS13D-209ENST00000487188 AQRO60306 1485 aaKnown RBP eCLIP8.26□□□□□ -1.096e-6■■■■□ 20.6
VPS13D-209ENST00000487188 FRAT1Q92837 279 aaPredicted RBP8.26□□□□□ -1.09
VPS13D-209ENST00000487188 CHD1O14646 1710 aa8.25□□□□□ -1.09
VPS13D-209ENST00000487188 NFKBIBQ15653 356 aa8.25□□□□□ -1.09
VPS13D-209ENST00000487188 ABCA10Q8WWZ4 1543 aa8.25□□□□□ -1.09
VPS13D-209ENST00000487188 CCDC7Q96M83 1385 aa8.25□□□□□ -1.09
VPS13D-209ENST00000487188 PBRM1Q86U86 1689 aa8.24□□□□□ -1.09
VPS13D-209ENST00000487188 UACAQ9BZF9 1416 aa8.24□□□□□ -1.09
VPS13D-209ENST00000487188 EXOC6Q8TAG9 804 aa8.24□□□□□ -1.09
VPS13D-209ENST00000487188 MS4A1P11836 297 aa8.23□□□□□ -1.09
VPS13D-209ENST00000487188 SLC4A3P48751 1232 aa8.23□□□□□ -1.09
VPS13D-209ENST00000487188 MTUS2Q5JR59 1369 aa8.23□□□□□ -1.09
VPS13D-209ENST00000487188 ZNF326Q5BKZ1 582 aaKnown RBP8.23□□□□□ -1.09
VPS13D-209ENST00000487188 BACH2Q9BYV9 841 aa8.23□□□□□ -1.09
VPS13D-209ENST00000487188 RRP7BPQ9NSQ0 103 aa8.23□□□□□ -1.09
VPS13D-209ENST00000487188 NAP1L5Q96NT1 182 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-209ENST00000487188 CHIC2Q9UKJ5 165 aa8.22□□□□□ -1.09
VPS13D-209ENST00000487188 RRP1P56182 461 aaKnown RBP8.22□□□□□ -1.09
VPS13D-209ENST00000487188 FAM43AQ8N2R8 423 aa8.22□□□□□ -1.09
VPS13D-209ENST00000487188 ARXQ96QS3 562 aa8.22□□□□□ -1.09
VPS13D-209ENST00000487188 VSIG10Q8N0Z9 540 aa8.21□□□□□ -1.09
VPS13D-209ENST00000487188 FMN1Q68DA7 1419 aa8.21□□□□□ -1.09
VPS13D-209ENST00000487188 MAP3K1Q13233 1512 aa8.21□□□□□ -1.09
VPS13D-209ENST00000487188 RCAN3Q9UKA8 241 aa8.2□□□□□ -1.1
VPS13D-209ENST00000487188 TDRD9Q8NDG6 1382 aaKnown RBP8.2□□□□□ -1.1
VPS13D-209ENST00000487188 L3MBTL2Q969R5 705 aa8.2□□□□□ -1.1
VPS13D-209ENST00000487188 NCOA2Q15596 1464 aa8.19□□□□□ -1.1
VPS13D-209ENST00000487188 SNAPC4Q5SXM2 1469 aa8.19□□□□□ -1.1
VPS13D-209ENST00000487188 MAGI1Q96QZ7 1491 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-209ENST00000487188 GRIN2BQ13224 1484 aa8.19□□□□□ -1.1
VPS13D-209ENST00000487188 KIF7Q2M1P5 1343 aa8.19□□□□□ -1.1
VPS13D-209ENST00000487188 FGD6Q6ZV73 1430 aa8.18□□□□□ -1.1
VPS13D-209ENST00000487188 GAPVD1Q14C86 1478 aa8.18□□□□□ -1.1
VPS13D-209ENST00000487188 CLASP1Q7Z460 1538 aa8.18□□□□□ -1.1
VPS13D-209ENST00000487188 HFM1A2PYH4 1435 aa8.17□□□□□ -1.1
VPS13D-209ENST00000487188 OSCARQ8IYS5 282 aa8.17□□□□□ -1.1
VPS13D-209ENST00000487188 NCOA1Q15788 1441 aa8.17□□□□□ -1.1
VPS13D-209ENST00000487188 L1TD1Q5T7N2 865 aaKnown RBP8.17□□□□□ -1.1
VPS13D-209ENST00000487188 CARMIL1Q5VZK9 1371 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 RIMBP3CA6NJZ7 1639 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 RIMBP3BA6NNM3 1639 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 RIMBP3Q9UFD9 1639 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 RNF123Q5XPI4 1314 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 FRAT2O75474 233 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-209ENST00000487188 ADAMTS12P58397 1594 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 HSP90AA1P07900 732 aaKnown RBP8.16□□□□□ -1.1
VPS13D-209ENST00000487188 PNNQ9H307 717 aaKnown RBP8.16□□□□□ -1.1
VPS13D-209ENST00000487188 FHOD3Q2V2M9 1422 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 FOXD1Q16676 465 aa8.16□□□□□ -1.1
VPS13D-209ENST00000487188 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS13D-209ENST00000487188 SYNJ2O15056 1496 aa8.15□□□□□ -1.1
VPS13D-209ENST00000487188 HSP90AA2PQ14568 343 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-209ENST00000487188 PCF11O94913 1555 aaKnown RBP8.15□□□□□ -1.1
VPS13D-209ENST00000487188 PTPN23Q9H3S7 1636 aa8.14□□□□□ -1.11
VPS13D-209ENST00000487188 RGS3P49796 1198 aa8.14□□□□□ -1.11
VPS13D-209ENST00000487188 MPHOSPH9Q99550 1183 aa8.13□□□□□ -1.11
VPS13D-209ENST00000487188 ARHGEF11O15085 1522 aa8.13□□□□□ -1.11
VPS13D-209ENST00000487188 CFAP43Q8NDM7 1665 aa8.13□□□□□ -1.11
VPS13D-209ENST00000487188 BECN1Q14457 450 aa8.13□□□□□ -1.11
VPS13D-209ENST00000487188 NAIPQ13075 1403 aa8.13□□□□□ -1.11
VPS13D-209ENST00000487188 PLIN1O60240 522 aa8.12□□□□□ -1.11
VPS13D-209ENST00000487188 SKAP1Q86WV1 359 aa8.12□□□□□ -1.11
VPS13D-209ENST00000487188 CRBNQ96SW2 442 aa8.12□□□□□ -1.11
VPS13D-209ENST00000487188 FAM161AQ3B820 660 aa8.12□□□□□ -1.11
VPS13D-209ENST00000487188 ZMYND15Q9H091 742 aa8.12□□□□□ -1.11
VPS13D-209ENST00000487188 PNISRQ8TF01 805 aaKnown RBP8.11□□□□□ -1.11
VPS13D-209ENST00000487188 SLC4A1APQ9BWU0 796 aaKnown RBP8.11□□□□□ -1.11
VPS13D-209ENST00000487188 FYCO1Q9BQS8 1478 aa8.11□□□□□ -1.11
VPS13D-209ENST00000487188 CEP170Q5SW79 1584 aa8.11□□□□□ -1.11
VPS13D-209ENST00000487188 PDE3BQ13370 1112 aa8.11□□□□□ -1.11
VPS13D-209ENST00000487188 NBPF8Q3BBV2 869 aa8.1□□□□□ -1.11
VPS13D-209ENST00000487188 SLKQ9H2G2 1235 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-209ENST00000487188 GRIN2AQ12879 1464 aa8.1□□□□□ -1.11
VPS13D-209ENST00000487188 IGF1RP08069 1367 aa8.1□□□□□ -1.11
VPS13D-209ENST00000487188 NUP160Q12769 1436 aa8.1□□□□□ -1.11
VPS13D-209ENST00000487188 SHROOM2Q13796 1616 aa8.1□□□□□ -1.11
VPS13D-209ENST00000487188 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-209ENST00000487188 KTN1Q86UP2 1357 aaKnown RBP8.09□□□□□ -1.11
VPS13D-209ENST00000487188 DCAF11Q8TEB1 546 aa8.09□□□□□ -1.11
VPS13D-209ENST00000487188 PTPRKQ15262 1439 aa8.09□□□□□ -1.11
VPS13D-209ENST00000487188 CASKIN1Q8WXD9 1431 aa8.09□□□□□ -1.11
VPS13D-209ENST00000487188 KIF15Q9NS87 1388 aa8.09□□□□□ -1.11
VPS13D-209ENST00000487188 MYBBP1AQ9BQG0 1328 aaKnown RBP8.09□□□□□ -1.11
VPS13D-209ENST00000487188 MYOM3Q5VTT5 1437 aa8.08□□□□□ -1.12
VPS13D-209ENST00000487188 CENPQQ7L2Z9 268 aaPredicted RBP8.08□□□□□ -1.12
VPS13D-209ENST00000487188 POGKQ9P215 609 aa8.08□□□□□ -1.12
VPS13D-209ENST00000487188 ARID4BQ4LE39 1312 aaPredicted RBP8.08□□□□□ -1.12
VPS13D-209ENST00000487188 GOLGA6L3A6NEY3 463 aa8.08□□□□□ -1.12
VPS13D-209ENST00000487188 UPF2Q9HAU5 1272 aaKnown RBP8.08□□□□□ -1.12
VPS13D-209ENST00000487188 USP47Q96K76 1375 aa8.08□□□□□ -1.12
VPS13D-209ENST00000487188 RALBP1Q15311 655 aa8.08□□□□□ -1.12
VPS13D-209ENST00000487188 ROCK2O75116 1388 aaKnown RBP8.08□□□□□ -1.12
VPS13D-209ENST00000487188 RRP9O43818 475 aaKnown RBP8.07□□□□□ -1.12
VPS13D-209ENST00000487188 RRAGDQ9NQL2 400 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-209ENST00000487188 CUL7Q14999 1698 aa8.06□□□□□ -1.12
VPS13D-209ENST00000487188 KDM5BQ9UGL1 1544 aa8.06□□□□□ -1.12
VPS13D-209ENST00000487188 TRIM44Q96DX7 344 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms