RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 TSPY4P0CV99 314 aa16.6■□□□□ 0.25
SHROOM3-208ENST00000486758 TSPY10P0CW01 314 aa16.6■□□□□ 0.25
SHROOM3-208ENST00000486758 POLA1P09884 1462 aaPredicted RBP16.6■□□□□ 0.25
SHROOM3-208ENST00000486758 AQRO60306 1485 aaKnown RBP eCLIP16.59■□□□□ 0.25
SHROOM3-208ENST00000486758 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
SHROOM3-208ENST00000486758 TIMELESSQ9UNS1 1208 aa16.58■□□□□ 0.24
SHROOM3-208ENST00000486758 BIVM-ERCC5R4GMW8 1640 aa16.58■□□□□ 0.24
SHROOM3-208ENST00000486758 PLEKHD1A6NEE1 506 aa16.57■□□□□ 0.24
SHROOM3-208ENST00000486758 NEFMP07197 916 aa16.57■□□□□ 0.24
SHROOM3-208ENST00000486758 GAPVD1Q14C86 1478 aa16.56■□□□□ 0.24
SHROOM3-208ENST00000486758 PKD2Q13563 968 aa16.56■□□□□ 0.24
SHROOM3-208ENST00000486758 PTPRKQ15262 1439 aa16.55■□□□□ 0.24
SHROOM3-208ENST00000486758 CARD11Q9BXL7 1154 aa16.54■□□□□ 0.24
SHROOM3-208ENST00000486758 WASHC2AQ641Q2 1341 aa16.54■□□□□ 0.24
SHROOM3-208ENST00000486758 PCF11O94913 1555 aaKnown RBP16.54■□□□□ 0.24
SHROOM3-208ENST00000486758 ARXQ96QS3 562 aa16.53■□□□□ 0.24
SHROOM3-208ENST00000486758 SLC24A1O60721 1099 aa16.52■□□□□ 0.24
SHROOM3-208ENST00000486758 DCAF11Q8TEB1 546 aa16.52■□□□□ 0.24
SHROOM3-208ENST00000486758 NCOA2Q15596 1464 aa16.51■□□□□ 0.23
SHROOM3-208ENST00000486758 CASKIN1Q8WXD9 1431 aa16.51■□□□□ 0.23
SHROOM3-208ENST00000486758 IL27Q8NEV9 243 aa16.5■□□□□ 0.23
SHROOM3-208ENST00000486758 PLPPR3Q6T4P5 718 aa16.5■□□□□ 0.23
SHROOM3-208ENST00000486758 IFT140Q96RY7 1462 aa16.49■□□□□ 0.23
SHROOM3-208ENST00000486758 MYOM3Q5VTT5 1437 aa16.47■□□□□ 0.23
SHROOM3-208ENST00000486758 HNRNPMP52272 730 aaKnown RBP eCLIP16.47■□□□□ 0.23
SHROOM3-208ENST00000486758 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
SHROOM3-208ENST00000486758 IPO9Q96P70 1041 aaKnown RBP16.46■□□□□ 0.23
SHROOM3-208ENST00000486758 CHGAP10645 457 aaKnown RBP16.45■□□□□ 0.22
SHROOM3-208ENST00000486758 UACAQ9BZF9 1416 aa16.44■□□□□ 0.22
SHROOM3-208ENST00000486758 NBPF8Q3BBV2 869 aa16.43■□□□□ 0.22
SHROOM3-208ENST00000486758 CC2D1BQ5T0F9 858 aaKnown RBP16.43■□□□□ 0.22
SHROOM3-208ENST00000486758 FYCO1Q9BQS8 1478 aa16.43■□□□□ 0.22
SHROOM3-208ENST00000486758 SKAP1Q86WV1 359 aa16.43■□□□□ 0.22
SHROOM3-208ENST00000486758 PRKRIP1Q9H875 184 aaPredicted RBP16.43■□□□□ 0.22
SHROOM3-208ENST00000486758 NUP155O75694 1391 aa16.4■□□□□ 0.22
SHROOM3-208ENST00000486758 CDK13Q14004 1512 aaKnown RBP16.39■□□□□ 0.21
SHROOM3-208ENST00000486758 NAIPQ13075 1403 aa16.39■□□□□ 0.21
SHROOM3-208ENST00000486758 JPH4Q96JJ6 628 aa16.39■□□□□ 0.21
SHROOM3-208ENST00000486758 SLC4A3P48751 1232 aa16.38■□□□□ 0.21
SHROOM3-208ENST00000486758 FAM69CQ0P6D2 419 aa16.37■□□□□ 0.21
SHROOM3-208ENST00000486758 AKNAQ7Z591 1439 aa16.37■□□□□ 0.21
SHROOM3-208ENST00000486758 ERICH6BQ5W0A0 696 aa16.36■□□□□ 0.21
SHROOM3-208ENST00000486758 ABCA10Q8WWZ4 1543 aa16.36■□□□□ 0.21
SHROOM3-208ENST00000486758 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
SHROOM3-208ENST00000486758 TARBP1Q13395 1621 aaKnown RBP16.35■□□□□ 0.21
SHROOM3-208ENST00000486758 KIF7Q2M1P5 1343 aa16.34■□□□□ 0.21
SHROOM3-208ENST00000486758 HFM1A2PYH4 1435 aa16.34■□□□□ 0.21
SHROOM3-208ENST00000486758 NUDCQ9Y266 331 aa16.32■□□□□ 0.2
SHROOM3-208ENST00000486758 EIF4G3O43432 1585 aaKnown RBP16.32■□□□□ 0.2
SHROOM3-208ENST00000486758 ZBED9Q6R2W3 1325 aa16.32■□□□□ 0.2
SHROOM3-208ENST00000486758 EXOC6Q8TAG9 804 aa16.31■□□□□ 0.2
SHROOM3-208ENST00000486758 PLIN1O60240 522 aa16.29■□□□□ 0.2
SHROOM3-208ENST00000486758 RGS3P49796 1198 aa16.29■□□□□ 0.2
SHROOM3-208ENST00000486758 PRG4Q92954 1404 aaPredicted RBP16.29■□□□□ 0.2
SHROOM3-208ENST00000486758 CCDC7Q96M83 1385 aa16.29■□□□□ 0.2
SHROOM3-208ENST00000486758 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
SHROOM3-208ENST00000486758 KDM6BO15054 1643 aa16.27■□□□□ 0.2
SHROOM3-208ENST00000486758 USP47Q96K76 1375 aa16.26■□□□□ 0.19
SHROOM3-208ENST00000486758 GRIN2BQ13224 1484 aa16.26■□□□□ 0.19
SHROOM3-208ENST00000486758 TNNT2P45379 298 aaPredicted RBP16.26■□□□□ 0.19
SHROOM3-208ENST00000486758 BRPF3Q9ULD4 1205 aa16.25■□□□□ 0.19
SHROOM3-208ENST00000486758 KDM5BQ9UGL1 1544 aa16.25■□□□□ 0.19
SHROOM3-208ENST00000486758 ANKRD30AQ9BXX3 1397 aa16.25■□□□□ 0.19
SHROOM3-208ENST00000486758 PPM1GO15355 546 aaPredicted RBP16.25■□□□□ 0.19
SHROOM3-208ENST00000486758 PDE4AP27815 886 aa16.25■□□□□ 0.19
SHROOM3-208ENST00000486758 SNAPC4Q5SXM2 1469 aa16.24■□□□□ 0.19
SHROOM3-208ENST00000486758 DENND4BO75064 1496 aaPredicted RBP16.24■□□□□ 0.19
SHROOM3-208ENST00000486758 ROCK2O75116 1388 aaKnown RBP16.23■□□□□ 0.19
SHROOM3-208ENST00000486758 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
SHROOM3-208ENST00000486758 NEUROD2Q15784 382 aa16.23■□□□□ 0.19
SHROOM3-208ENST00000486758 EPRSP07814 1512 aaKnown RBP16.22■□□□□ 0.19
SHROOM3-208ENST00000486758 WDR43Q15061 677 aaKnown RBP eCLIP16.22■□□□□ 0.19
SHROOM3-208ENST00000486758 RCAN3Q9UKA8 241 aa16.22■□□□□ 0.19
SHROOM3-208ENST00000486758 MAP3K1Q13233 1512 aa16.21■□□□□ 0.19
SHROOM3-208ENST00000486758 CARMIL2Q6F5E8 1435 aa16.2■□□□□ 0.18
SHROOM3-208ENST00000486758 CNTLNQ9NXG0 1405 aa16.19■□□□□ 0.18
SHROOM3-208ENST00000486758 ARID4BQ4LE39 1312 aaPredicted RBP16.19■□□□□ 0.18
SHROOM3-208ENST00000486758 PTPN23Q9H3S7 1636 aa16.19■□□□□ 0.18
SHROOM3-208ENST00000486758 ARHGEF11O15085 1522 aa16.19■□□□□ 0.18
SHROOM3-208ENST00000486758 EHBP1L1Q8N3D4 1523 aa16.18■□□□□ 0.18
SHROOM3-208ENST00000486758 SUPT6HQ7KZ85 1726 aaKnown RBP16.17■□□□□ 0.18
SHROOM3-208ENST00000486758 NBPF1Q3BBV0 1214 aa16.17■□□□□ 0.18
SHROOM3-208ENST00000486758 KNSTRNQ9Y448 316 aa16.16■□□□□ 0.18
SHROOM3-208ENST00000486758 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
SHROOM3-208ENST00000486758 DDRGK1Q96HY6 314 aa16.16■□□□□ 0.18
SHROOM3-208ENST00000486758 TCERG1O14776 1098 aaKnown RBP16.15■□□□□ 0.18
SHROOM3-208ENST00000486758 MAGI1Q96QZ7 1491 aaPredicted RBP16.15■□□□□ 0.18
SHROOM3-208ENST00000486758 PLB1Q6P1J6 1458 aa16.15■□□□□ 0.18
SHROOM3-208ENST00000486758 MAGI3Q5TCQ9 1506 aa16.15■□□□□ 0.18
SHROOM3-208ENST00000486758 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHROOM3-208ENST00000486758 DAPK1P53355 1430 aa16.14■□□□□ 0.17
SHROOM3-208ENST00000486758 RRP1P56182 461 aaKnown RBP16.13■□□□□ 0.17
SHROOM3-208ENST00000486758 PBRM1Q86U86 1689 aa16.13■□□□□ 0.17
SHROOM3-208ENST00000486758 CFAP43Q8NDM7 1665 aa16.13■□□□□ 0.17
SHROOM3-208ENST00000486758 ANKRD50Q9ULJ7 1429 aa16.13■□□□□ 0.17
SHROOM3-208ENST00000486758 CUL7Q14999 1698 aa16.12■□□□□ 0.17
SHROOM3-208ENST00000486758 LRRIQ1Q96JM4 1722 aa16.12■□□□□ 0.17
SHROOM3-208ENST00000486758 SYNJ2O15056 1496 aa16.12■□□□□ 0.17
SHROOM3-208ENST00000486758 SAFB2Q14151 953 aaKnown RBP eCLIP16.11■□□□□ 0.17
SHROOM3-208ENST00000486758 CDCA7LQ96GN5 454 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms