RNA–Protein interactions for RNA: ENST00000484038.1

SEMA3D-204, Transcript of semaphorin 3D, humanhuman

TSL 1 (best)

Gene SEMA3D, Length 1,503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-204ENST00000484038 ARHGEF11O15085 1522 aa11.28□□□□□ -0.6
SEMA3D-204ENST00000484038 SLC39A7Q92504 469 aa11.27□□□□□ -0.61
SEMA3D-204ENST00000484038 EIF4G3O43432 1585 aaKnown RBP11.26□□□□□ -0.61
SEMA3D-204ENST00000484038 TOPBP1Q92547 1522 aa11.25□□□□□ -0.61
SEMA3D-204ENST00000484038 CCDC88BA6NC98 1476 aa11.25□□□□□ -0.61
SEMA3D-204ENST00000484038 HS6ST3Q8IZP7 471 aa11.25□□□□□ -0.61
SEMA3D-204ENST00000484038 EFCAB3Q8N7B9 438 aa11.25□□□□□ -0.61
SEMA3D-204ENST00000484038 METRNQ9UJH8 293 aa11.25□□□□□ -0.61
SEMA3D-204ENST00000484038 SEC24BO95487 1268 aa11.24□□□□□ -0.61
SEMA3D-204ENST00000484038 C7P10643 843 aa11.22□□□□□ -0.61
SEMA3D-204ENST00000484038 IER5LQ5T953 404 aa11.21□□□□□ -0.61
SEMA3D-204ENST00000484038 CHD1O14646 1710 aa11.2□□□□□ -0.62
SEMA3D-204ENST00000484038 DNMBPQ6XZF7 1577 aa11.2□□□□□ -0.62
SEMA3D-204ENST00000484038 PLCG2P16885 1265 aa11.19□□□□□ -0.62
SEMA3D-204ENST00000484038 ABCC8Q09428 1581 aa11.19□□□□□ -0.62
SEMA3D-204ENST00000484038 CYB5RLQ6IPT4 315 aa11.19□□□□□ -0.62
SEMA3D-204ENST00000484038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.19□□□□□ -0.62
SEMA3D-204ENST00000484038 AQRO60306 1485 aaKnown RBP eCLIP11.17□□□□□ -0.62
SEMA3D-204ENST00000484038 TARBP1Q13395 1621 aaKnown RBP11.16□□□□□ -0.62
SEMA3D-204ENST00000484038 SOX12O15370 315 aa11.15□□□□□ -0.62
SEMA3D-204ENST00000484038 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
SEMA3D-204ENST00000484038 IRX5P78411 483 aaPredicted RBP11.14□□□□□ -0.63
SEMA3D-204ENST00000484038 OCEL1Q9H607 264 aa11.14□□□□□ -0.63
SEMA3D-204ENST00000484038 PHF8Q9UPP1 1060 aa11.14□□□□□ -0.63
SEMA3D-204ENST00000484038 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
SEMA3D-204ENST00000484038 POLA1P09884 1462 aaPredicted RBP11.12□□□□□ -0.63
SEMA3D-204ENST00000484038 NLRP6P59044 892 aa11.11□□□□□ -0.63
SEMA3D-204ENST00000484038 MFRPQ9BY79 579 aa11.09□□□□□ -0.63
SEMA3D-204ENST00000484038 RAD54L2Q9Y4B4 1467 aa11.09□□□□□ -0.63
SEMA3D-204ENST00000484038 POTEFA5A3E0 1075 aa11.09□□□□□ -0.63
SEMA3D-204ENST00000484038 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
SEMA3D-204ENST00000484038 TDRD9Q8NDG6 1382 aaKnown RBP11.08□□□□□ -0.64
SEMA3D-204ENST00000484038 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.08□□□□□ -0.64
SEMA3D-204ENST00000484038 SNAPC4Q5SXM2 1469 aa11.07□□□□□ -0.64
SEMA3D-204ENST00000484038 NKX1-1Q15270 411 aaPredicted RBP11.07□□□□□ -0.64
SEMA3D-204ENST00000484038 PDCD7Q8N8D1 485 aaKnown RBP11.07□□□□□ -0.64
SEMA3D-204ENST00000484038 SOGA1O94964 1423 aa11.06□□□□□ -0.64
SEMA3D-204ENST00000484038 G3V3G9 751 aa11.06□□□□□ -0.64
SEMA3D-204ENST00000484038 DPY19L2Q6NUT2 758 aa11.05□□□□□ -0.64
SEMA3D-204ENST00000484038 CLASP1Q7Z460 1538 aa11.04□□□□□ -0.64
SEMA3D-204ENST00000484038 FGD5Q6ZNL6 1462 aa11.04□□□□□ -0.64
SEMA3D-204ENST00000484038 SYNJ1O43426 1573 aa11.04□□□□□ -0.64
SEMA3D-204ENST00000484038 FBXO22Q8NEZ5 403 aa11.04□□□□□ -0.64
SEMA3D-204ENST00000484038 RYDENQ9NUL5 291 aaKnown RBP11.04□□□□□ -0.64
SEMA3D-204ENST00000484038 CHMP7Q8WUX9 453 aaPredicted RBP11.03□□□□□ -0.64
SEMA3D-204ENST00000484038 MS4A4AQ96JQ5 239 aa11.03□□□□□ -0.64
SEMA3D-204ENST00000484038 WDR97A6NE52 1622 aa11.03□□□□□ -0.64
SEMA3D-204ENST00000484038 MAGI1Q96QZ7 1491 aaPredicted RBP11.02□□□□□ -0.65
SEMA3D-204ENST00000484038 LHX8Q68G74 356 aa11.02□□□□□ -0.65
SEMA3D-204ENST00000484038 ILDR1Q86SU0 546 aaPredicted RBP11.02□□□□□ -0.65
SEMA3D-204ENST00000484038 POTEB2H3BUK9 544 aa11.01□□□□□ -0.65
SEMA3D-204ENST00000484038 L3MBTL3Q96JM7 780 aaPredicted RBP11□□□□□ -0.65
SEMA3D-204ENST00000484038 CUX1P39880 1505 aa11□□□□□ -0.65
SEMA3D-204ENST00000484038 CFAP44Q96MT7 982 aa10.99□□□□□ -0.65
SEMA3D-204ENST00000484038 GRIN2BQ13224 1484 aa10.99□□□□□ -0.65
SEMA3D-204ENST00000484038 BOLA1Q9Y3E2 137 aa10.99□□□□□ -0.65
SEMA3D-204ENST00000484038 SYNJ2O15056 1496 aa10.98□□□□□ -0.65
SEMA3D-204ENST00000484038 PAXIP1Q6ZW49 1069 aaPredicted RBP10.98□□□□□ -0.65
SEMA3D-204ENST00000484038 PBRM1Q86U86 1689 aa10.97□□□□□ -0.65
SEMA3D-204ENST00000484038 SPRYD3Q8NCJ5 442 aa10.97□□□□□ -0.65
SEMA3D-204ENST00000484038 GTPBP6O43824 516 aaPredicted RBP10.96□□□□□ -0.65
SEMA3D-204ENST00000484038 C3orf67Q6ZVT6 689 aa10.96□□□□□ -0.65
SEMA3D-204ENST00000484038 SCUBE2Q9NQ36 999 aa10.96□□□□□ -0.65
SEMA3D-204ENST00000484038 PPP1R37O75864 691 aa10.94□□□□□ -0.66
SEMA3D-204ENST00000484038 GAPVD1Q14C86 1478 aa10.94□□□□□ -0.66
SEMA3D-204ENST00000484038 MAMSTRQ6ZN01 415 aa10.94□□□□□ -0.66
SEMA3D-204ENST00000484038 POTEJP0CG39 1038 aa10.93□□□□□ -0.66
SEMA3D-204ENST00000484038 MICALL2Q8IY33 904 aa10.93□□□□□ -0.66
SEMA3D-204ENST00000484038 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.91□□□□□ -0.66
SEMA3D-204ENST00000484038 ABCA5Q8WWZ7 1642 aa10.91□□□□□ -0.66
SEMA3D-204ENST00000484038 ABCA10Q8WWZ4 1543 aa10.88□□□□□ -0.67
SEMA3D-204ENST00000484038 ERCC6L2Q5T890 1561 aa10.88□□□□□ -0.67
SEMA3D-204ENST00000484038 GRIN2AQ12879 1464 aa10.86□□□□□ -0.67
SEMA3D-204ENST00000484038 SLAIN1Q8ND83 568 aa10.85□□□□□ -0.67
SEMA3D-204ENST00000484038 OTUD5Q96G74 571 aa10.85□□□□□ -0.67
SEMA3D-204ENST00000484038 TMEM121BQ9BXQ6 578 aaPredicted RBP10.85□□□□□ -0.67
SEMA3D-204ENST00000484038 ADAMTS12P58397 1594 aa10.85□□□□□ -0.67
SEMA3D-204ENST00000484038 CEP170Q5SW79 1584 aa10.84□□□□□ -0.67
SEMA3D-204ENST00000484038 PLCB2Q00722 1185 aa10.82□□□□□ -0.68
SEMA3D-204ENST00000484038 WRNQ14191 1432 aaPredicted RBP eCLIP10.82□□□□□ -0.68
SEMA3D-204ENST00000484038 NUP160Q12769 1436 aa10.81□□□□□ -0.68
SEMA3D-204ENST00000484038 SHROOM2Q13796 1616 aa10.8□□□□□ -0.68
SEMA3D-204ENST00000484038 TMC2Q8TDI7 906 aa10.79□□□□□ -0.68
SEMA3D-204ENST00000484038 FHAD1B1AJZ9 1412 aa10.78□□□□□ -0.68
SEMA3D-204ENST00000484038 BIVM-ERCC5R4GMW8 1640 aa10.78□□□□□ -0.68
SEMA3D-204ENST00000484038 TOP2BQ02880 1626 aa10.77□□□□□ -0.69
SEMA3D-204ENST00000484038 SUPT5HO00267 1087 aaKnown RBP10.77□□□□□ -0.69
SEMA3D-204ENST00000484038 KIF13AQ9H1H9 1805 aa10.76□□□□□ -0.69
SEMA3D-204ENST00000484038 TMEM92Q6UXU6 159 aa10.75□□□□□ -0.69
SEMA3D-204ENST00000484038 ERICH3Q5RHP9 1530 aa10.75□□□□□ -0.69
SEMA3D-204ENST00000484038 HAP1P54257 671 aaPredicted RBP10.74□□□□□ -0.69
SEMA3D-204ENST00000484038 PRG4Q92954 1404 aaPredicted RBP10.74□□□□□ -0.69
SEMA3D-204ENST00000484038 C2orf72A6NCS6 295 aa10.73□□□□□ -0.69
SEMA3D-204ENST00000484038 CADPS2Q86UW7 1296 aa10.72□□□□□ -0.69
SEMA3D-204ENST00000484038 TSHZ2Q9NRE2 1034 aa10.71□□□□□ -0.69
SEMA3D-204ENST00000484038 RUSC2Q8N2Y8 1516 aa10.71□□□□□ -0.7
SEMA3D-204ENST00000484038 PDE4AP27815 886 aa10.7□□□□□ -0.7
SEMA3D-204ENST00000484038 JPH4Q96JJ6 628 aa10.69□□□□□ -0.7
SEMA3D-204ENST00000484038 FAM69CQ0P6D2 419 aa10.68□□□□□ -0.7
SEMA3D-204ENST00000484038 LARP6Q9BRS8 491 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms