RNA–Protein interactions for RNA: ENST00000484038.1

SEMA3D-204, Transcript of semaphorin 3D, humanhuman

TSL 1 (best)

Gene SEMA3D, Length 1,503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-204ENST00000484038 AEBP2Q6ZN18 517 aaPredicted RBP23.03■■□□□ 1.28
SEMA3D-204ENST00000484038 CHIC1Q5VXU3 224 aa22.46■■□□□ 1.19
SEMA3D-204ENST00000484038 PHF23Q9BUL5 403 aaPredicted RBP19.71■□□□□ 0.75
SEMA3D-204ENST00000484038 SENP3Q9H4L4 574 aaPredicted RBP19.61■□□□□ 0.73
SEMA3D-204ENST00000484038 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
SEMA3D-204ENST00000484038 FOXD1Q16676 465 aa18.18■□□□□ 0.5
SEMA3D-204ENST00000484038 ADRA2BP18089 450 aa17.46■□□□□ 0.39
SEMA3D-204ENST00000484038 PPP6R1Q9UPN7 881 aa17.42■□□□□ 0.38
SEMA3D-204ENST00000484038 PIAS4Q8N2W9 510 aaPredicted RBP17.21■□□□□ 0.34
SEMA3D-204ENST00000484038 MSH5O43196 834 aa16.83■□□□□ 0.28
SEMA3D-204ENST00000484038 PPP4R3CPQ6ZMV5 832 aa16.07■□□□□ 0.16
SEMA3D-204ENST00000484038 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
SEMA3D-204ENST00000484038 MAPK8IP2Q13387 824 aaPredicted RBP15.84■□□□□ 0.13
SEMA3D-204ENST00000484038 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
SEMA3D-204ENST00000484038 KCNA4P22459 653 aa15.63■□□□□ 0.09
SEMA3D-204ENST00000484038 CNKSR2Q8WXI2 1034 aa15.63■□□□□ 0.09
SEMA3D-204ENST00000484038 DMRT2Q9Y5R5 561 aa15.62■□□□□ 0.09
SEMA3D-204ENST00000484038 POTEDQ86YR6 584 aa15.42■□□□□ 0.06
SEMA3D-204ENST00000484038 NPM3O75607 178 aaKnown RBP15.39■□□□□ 0.05
SEMA3D-204ENST00000484038 RNF216Q9NWF9 866 aaPredicted RBP15.32■□□□□ 0.04
SEMA3D-204ENST00000484038 HOXD11P31277 338 aaPredicted RBP15.24■□□□□ 0.03
SEMA3D-204ENST00000484038 NISCHQ9Y2I1 1504 aa15.15■□□□□ 0.02
SEMA3D-204ENST00000484038 DCAF8L1A6NGE4 600 aa15.11■□□□□ 0.01
SEMA3D-204ENST00000484038 SLC4A1APQ9BWU0 796 aaKnown RBP14.9□□□□□ -0.02
SEMA3D-204ENST00000484038 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
SEMA3D-204ENST00000484038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.64□□□□□ -0.07
SEMA3D-204ENST00000484038 SLC4A2P04920 1241 aa14.51□□□□□ -0.09
SEMA3D-204ENST00000484038 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
SEMA3D-204ENST00000484038 FOXD4L1Q9NU39 408 aa14.41□□□□□ -0.1
SEMA3D-204ENST00000484038 RNF39Q9H2S5 420 aa14.37□□□□□ -0.11
SEMA3D-204ENST00000484038 ZBTB22O15209 634 aa14.34□□□□□ -0.11
SEMA3D-204ENST00000484038 U3KPZ7 1027 aaPredicted RBP14.33□□□□□ -0.12
SEMA3D-204ENST00000484038 MYCNP04198 464 aaPredicted RBP14.25□□□□□ -0.13
SEMA3D-204ENST00000484038 C1QBPQ07021 282 aaKnown RBP14.21□□□□□ -0.13
SEMA3D-204ENST00000484038 CSRNP3Q8WYN3 585 aa14.21□□□□□ -0.13
SEMA3D-204ENST00000484038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.17□□□□□ -0.14
SEMA3D-204ENST00000484038 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
SEMA3D-204ENST00000484038 CACNB1Q02641 598 aaPredicted RBP14.14□□□□□ -0.15
SEMA3D-204ENST00000484038 SAMD1Q6SPF0 538 aaPredicted RBP14.1□□□□□ -0.15
SEMA3D-204ENST00000484038 APLP2Q06481 763 aa14.05□□□□□ -0.16
SEMA3D-204ENST00000484038 CAPN15O75808 1086 aa13.99□□□□□ -0.17
SEMA3D-204ENST00000484038 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
SEMA3D-204ENST00000484038 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
SEMA3D-204ENST00000484038 ABCC9O60706 1549 aa13.89□□□□□ -0.19
SEMA3D-204ENST00000484038 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
SEMA3D-204ENST00000484038 ZNF219Q9P2Y4 722 aaPredicted RBP13.85□□□□□ -0.19
SEMA3D-204ENST00000484038 ATF5Q9Y2D1 282 aaPredicted RBP13.84□□□□□ -0.19
SEMA3D-204ENST00000484038 ABCB7O75027 752 aa13.7□□□□□ -0.22
SEMA3D-204ENST00000484038 CCDC180Q9P1Z9 1646 aa13.7□□□□□ -0.22
SEMA3D-204ENST00000484038 DSG3P32926 999 aa13.67□□□□□ -0.22
SEMA3D-204ENST00000484038 POLA2Q14181 598 aa13.61□□□□□ -0.23
SEMA3D-204ENST00000484038 ZBTB12Q9Y330 459 aaPredicted RBP13.39□□□□□ -0.27
SEMA3D-204ENST00000484038 FBLN2P98095 1184 aa13.34□□□□□ -0.27
SEMA3D-204ENST00000484038 MKRN4PQ13434 485 aaPredicted RBP13.22□□□□□ -0.29
SEMA3D-204ENST00000484038 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
SEMA3D-204ENST00000484038 RB1CC1Q8TDY2 1594 aa13.12□□□□□ -0.31
SEMA3D-204ENST00000484038 RBM42Q9BTD8 480 aaKnown RBP13.08□□□□□ -0.32
SEMA3D-204ENST00000484038 SPDYE2BA6NHP3 402 aa12.99□□□□□ -0.33
SEMA3D-204ENST00000484038 SPDYE6P0CI01 402 aa12.99□□□□□ -0.33
SEMA3D-204ENST00000484038 SPDYE2Q495Y8 402 aa12.99□□□□□ -0.33
SEMA3D-204ENST00000484038 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
SEMA3D-204ENST00000484038 NACADO15069 1562 aa12.97□□□□□ -0.33
SEMA3D-204ENST00000484038 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
SEMA3D-204ENST00000484038 FKBP8Q14318 412 aa12.93□□□□□ -0.34
SEMA3D-204ENST00000484038 DCAF8L2P0C7V8 631 aa12.91□□□□□ -0.34
SEMA3D-204ENST00000484038 PABPN1Q86U42 306 aaKnown RBP eCLIP12.88□□□□□ -0.35
SEMA3D-204ENST00000484038 AKT1S1Q96B36 256 aa12.87□□□□□ -0.35
SEMA3D-204ENST00000484038 SSUH2Q9Y2M2 353 aa12.85□□□□□ -0.35
SEMA3D-204ENST00000484038 UNC13AQ9UPW8 1703 aa12.84□□□□□ -0.35
SEMA3D-204ENST00000484038 REM2Q8IYK8 340 aaPredicted RBP12.75□□□□□ -0.37
SEMA3D-204ENST00000484038 BICRAQ9NZM4 1560 aa12.74□□□□□ -0.37
SEMA3D-204ENST00000484038 MYO15BQ96JP2 1530 aa12.71□□□□□ -0.38
SEMA3D-204ENST00000484038 CLEC11AQ9Y240 323 aa12.67□□□□□ -0.38
SEMA3D-204ENST00000484038 SPDYE1Q8NFV5 336 aaPredicted RBP12.66□□□□□ -0.38
SEMA3D-204ENST00000484038 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
SEMA3D-204ENST00000484038 PROM2Q8N271 834 aa12.61□□□□□ -0.39
SEMA3D-204ENST00000484038 CHRDL2Q6WN34 429 aa12.55□□□□□ -0.4
SEMA3D-204ENST00000484038 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
SEMA3D-204ENST00000484038 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
SEMA3D-204ENST00000484038 SHROOM4Q9ULL8 1493 aa12.53□□□□□ -0.4
SEMA3D-204ENST00000484038 CC2D2AQ9P2K1 1620 aa12.53□□□□□ -0.4
SEMA3D-204ENST00000484038 CECR2Q9BXF3 1484 aa12.52□□□□□ -0.41
SEMA3D-204ENST00000484038 SCRIBQ14160 1630 aa12.51□□□□□ -0.41
SEMA3D-204ENST00000484038 PRR29P0C7W0 189 aa12.51□□□□□ -0.41
SEMA3D-204ENST00000484038 DCAF1Q9Y4B6 1507 aa12.48□□□□□ -0.41
SEMA3D-204ENST00000484038 FBXO3Q9UK99 471 aa12.47□□□□□ -0.41
SEMA3D-204ENST00000484038 EIF4G1Q04637 1599 aaKnown RBP12.45□□□□□ -0.42
SEMA3D-204ENST00000484038 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
SEMA3D-204ENST00000484038 FXR2P51116 673 aaKnown RBP eCLIP12.35□□□□□ -0.43
SEMA3D-204ENST00000484038 PRKAR2AP13861 404 aaKnown RBP12.33□□□□□ -0.44
SEMA3D-204ENST00000484038 CHADLQ6NUI6 762 aa12.32□□□□□ -0.44
SEMA3D-204ENST00000484038 MIER1Q8N108 512 aa12.32□□□□□ -0.44
SEMA3D-204ENST00000484038 PLCD3Q8N3E9 789 aa12.32□□□□□ -0.44
SEMA3D-204ENST00000484038 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
SEMA3D-204ENST00000484038 VASPP50552 380 aaPredicted RBP12.3□□□□□ -0.44
SEMA3D-204ENST00000484038 CREBZFQ9NS37 354 aa12.27□□□□□ -0.45
SEMA3D-204ENST00000484038 POTEHQ6S545 545 aa12.22□□□□□ -0.45
SEMA3D-204ENST00000484038 KLHL34Q8N239 644 aa12.18□□□□□ -0.46
SEMA3D-204ENST00000484038 DNAJC5Q9H3Z4 198 aa12.18□□□□□ -0.46
SEMA3D-204ENST00000484038 ZBTB47Q9UFB7 747 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms