RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 KRTAP3-3Q9BYR6 98 aa11.39□□□□□ -0.59
USP48-208ENST00000479177 KRTAP3-2Q9BYR7 98 aa11.39□□□□□ -0.59
USP48-208ENST00000479177 LAMC3Q9Y6N6 1575 aa11.39□□□□□ -0.59
USP48-208ENST00000479177 GOLGA2Q08379 1002 aa11.38□□□□□ -0.59
USP48-208ENST00000479177 DPY19L2Q6NUT2 758 aa11.38□□□□□ -0.59
USP48-208ENST00000479177 L3MBTL3Q96JM7 780 aaPredicted RBP11.38□□□□□ -0.59
USP48-208ENST00000479177 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.38□□□□□ -0.599e-14■■■■■ 28.3
USP48-208ENST00000479177 PSEN1P49768 467 aa11.37□□□□□ -0.59
USP48-208ENST00000479177 HS3ST6Q96QI5 342 aa11.37□□□□□ -0.59
USP48-208ENST00000479177 NESP48681 1621 aa11.37□□□□□ -0.59
USP48-208ENST00000479177 FAM205CA6NFA0 338 aa11.36□□□□□ -0.59
USP48-208ENST00000479177 CHRM1P11229 460 aaPredicted RBP11.35□□□□□ -0.59
USP48-208ENST00000479177 ILDR1Q86SU0 546 aaPredicted RBP11.33□□□□□ -0.6
USP48-208ENST00000479177 ECM2O94769 699 aaPredicted RBP11.32□□□□□ -0.6
USP48-208ENST00000479177 ABCC8Q09428 1581 aa11.32□□□□□ -0.6
USP48-208ENST00000479177 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
USP48-208ENST00000479177 RTN4Q9NQC3 1192 aaKnown RBP11.3□□□□□ -0.6
USP48-208ENST00000479177 FANCD2Q9BXW9 1451 aa11.3□□□□□ -0.6
USP48-208ENST00000479177 HOXB3P14651 431 aaPredicted RBP11.28□□□□□ -0.6
USP48-208ENST00000479177 TRIM41Q8WV44 630 aa11.27□□□□□ -0.61
USP48-208ENST00000479177 KIF21AQ7Z4S6 1674 aa11.27□□□□□ -0.61
USP48-208ENST00000479177 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
USP48-208ENST00000479177 PDS5BQ9NTI5 1447 aa11.26□□□□□ -0.61
USP48-208ENST00000479177 SYNJ1O43426 1573 aa11.26□□□□□ -0.61
USP48-208ENST00000479177 RGL2O15211 777 aa11.26□□□□□ -0.61
USP48-208ENST00000479177 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
USP48-208ENST00000479177 CABP2Q9NPB3 220 aa11.25□□□□□ -0.61
USP48-208ENST00000479177 BIVM-ERCC5R4GMW8 1640 aa11.24□□□□□ -0.61
USP48-208ENST00000479177 PDAP1Q13442 181 aaKnown RBP11.24□□□□□ -0.61
USP48-208ENST00000479177 CUX1P39880 1505 aa11.23□□□□□ -0.61
USP48-208ENST00000479177 TOP2BQ02880 1626 aa11.23□□□□□ -0.61
USP48-208ENST00000479177 BOLA1Q9Y3E2 137 aa11.22□□□□□ -0.61
USP48-208ENST00000479177 DNMBPQ6XZF7 1577 aa11.2□□□□□ -0.62
USP48-208ENST00000479177 RIOK3O14730 519 aaKnown RBP11.2□□□□□ -0.62
USP48-208ENST00000479177 AMER1Q5JTC6 1135 aaPredicted RBP11.2□□□□□ -0.62
USP48-208ENST00000479177 URB2Q14146 1524 aaKnown RBP11.18□□□□□ -0.62
USP48-208ENST00000479177 TOPBP1Q92547 1522 aa11.17□□□□□ -0.62
USP48-208ENST00000479177 MRC2Q9UBG0 1479 aa11.17□□□□□ -0.62
USP48-208ENST00000479177 HOXB1P14653 301 aaPredicted RBP11.16□□□□□ -0.62
USP48-208ENST00000479177 ERCC6Q03468 1493 aa11.16□□□□□ -0.62
USP48-208ENST00000479177 THOC2Q8NI27 1593 aaKnown RBP11.16□□□□□ -0.62
USP48-208ENST00000479177 WDR62O43379 1518 aa11.14□□□□□ -0.63
USP48-208ENST00000479177 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.13□□□□□ -0.63
USP48-208ENST00000479177 G3V3G9 751 aa11.13□□□□□ -0.63
USP48-208ENST00000479177 ZFP91Q96JP5 570 aaPredicted RBP11.13□□□□□ -0.63
USP48-208ENST00000479177 FGD5Q6ZNL6 1462 aa11.12□□□□□ -0.63
USP48-208ENST00000479177 ZNF710Q8N1W2 664 aa11.12□□□□□ -0.63
USP48-208ENST00000479177 ERBB3P21860 1342 aa11.11□□□□□ -0.63
USP48-208ENST00000479177 VGFO15240 615 aaPredicted RBP11.1□□□□□ -0.63
USP48-208ENST00000479177 EFCAB3Q8N7B9 438 aa11.1□□□□□ -0.63
USP48-208ENST00000479177 POLA1P09884 1462 aaPredicted RBP11.1□□□□□ -0.63
USP48-208ENST00000479177 DOK7Q18PE1 504 aa11.09□□□□□ -0.63
USP48-208ENST00000479177 TMEM92Q6UXU6 159 aa11.09□□□□□ -0.63
USP48-208ENST00000479177 WDR97A6NE52 1622 aa11.06□□□□□ -0.64
USP48-208ENST00000479177 VARS2Q5ST30 1063 aaKnown RBP11.06□□□□□ -0.64
USP48-208ENST00000479177 BCL11BQ9C0K0 894 aaPredicted RBP11.05□□□□□ -0.64
USP48-208ENST00000479177 SOGA1O94964 1423 aa11.04□□□□□ -0.64
USP48-208ENST00000479177 TARBP1Q13395 1621 aaKnown RBP11.04□□□□□ -0.64
USP48-208ENST00000479177 ABCA10Q8WWZ4 1543 aa11.04□□□□□ -0.64
USP48-208ENST00000479177 EEA1Q15075 1411 aa11.03□□□□□ -0.64
USP48-208ENST00000479177 STK25O00506 426 aa11.03□□□□□ -0.64
USP48-208ENST00000479177 CUX2O14529 1486 aa11.03□□□□□ -0.64
USP48-208ENST00000479177 RAD54L2Q9Y4B4 1467 aa11.03□□□□□ -0.64
USP48-208ENST00000479177 RNF166Q96A37 237 aaPredicted RBP11.02□□□□□ -0.65
USP48-208ENST00000479177 STK24Q9Y6E0 443 aa11.02□□□□□ -0.65
USP48-208ENST00000479177 RUSC2Q8N2Y8 1516 aa11.01□□□□□ -0.65
USP48-208ENST00000479177 MICALL2Q8IY33 904 aa11.01□□□□□ -0.65
USP48-208ENST00000479177 IFT140Q96RY7 1462 aa11□□□□□ -0.65
USP48-208ENST00000479177 ABCA5Q8WWZ7 1642 aa10.99□□□□□ -0.65
USP48-208ENST00000479177 CHGAP10645 457 aaKnown RBP10.99□□□□□ -0.65
USP48-208ENST00000479177 GPR153Q6NV75 609 aa10.99□□□□□ -0.65
USP48-208ENST00000479177 KIF27Q86VH2 1401 aa10.99□□□□□ -0.65
USP48-208ENST00000479177 MS4A4AQ96JQ5 239 aa10.98□□□□□ -0.65
USP48-208ENST00000479177 ZNF687Q8N1G0 1237 aa10.97□□□□□ -0.65
USP48-208ENST00000479177 TAOK2Q9UL54 1235 aa10.97□□□□□ -0.65
USP48-208ENST00000479177 MYT1LQ9UL68 1186 aa10.97□□□□□ -0.65
USP48-208ENST00000479177 RIMBP2O15034 1052 aa10.96□□□□□ -0.65
USP48-208ENST00000479177 HS6ST3Q8IZP7 471 aa10.95□□□□□ -0.66
USP48-208ENST00000479177 FAM9AQ8IZU1 332 aaPredicted RBP10.94□□□□□ -0.66
USP48-208ENST00000479177 ZSWIM6Q9HCJ5 1215 aa10.93□□□□□ -0.66
USP48-208ENST00000479177 KIF21BO75037 1637 aa10.93□□□□□ -0.66
USP48-208ENST00000479177 EIF4G3O43432 1585 aaKnown RBP10.93□□□□□ -0.66
USP48-208ENST00000479177 ZNF608Q9ULD9 1512 aaPredicted RBP10.93□□□□□ -0.66
USP48-208ENST00000479177 PBRM1Q86U86 1689 aa10.92□□□□□ -0.66
USP48-208ENST00000479177 PHF8Q9UPP1 1060 aa10.92□□□□□ -0.66
USP48-208ENST00000479177 GAPVD1Q14C86 1478 aa10.92□□□□□ -0.66
USP48-208ENST00000479177 TDRD9Q8NDG6 1382 aaKnown RBP10.91□□□□□ -0.66
USP48-208ENST00000479177 ERICH3Q5RHP9 1530 aa10.91□□□□□ -0.66
USP48-208ENST00000479177 ARSIQ5FYB1 569 aa10.91□□□□□ -0.66
USP48-208ENST00000479177 KHSRPQ92945 711 aaKnown RBP eCLIP10.91□□□□□ -0.661e-7■□□□□ 8.9
USP48-208ENST00000479177 CUL7Q14999 1698 aa10.89□□□□□ -0.67
USP48-208ENST00000479177 PRXQ9BXM0 1461 aa10.89□□□□□ -0.67
USP48-208ENST00000479177 NKX1-1Q15270 411 aaPredicted RBP10.89□□□□□ -0.67
USP48-208ENST00000479177 IGF1RP08069 1367 aa10.89□□□□□ -0.67
USP48-208ENST00000479177 AQRO60306 1485 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP48-208ENST00000479177 SOX12O15370 315 aa10.88□□□□□ -0.67
USP48-208ENST00000479177 MFRPQ9BY79 579 aa10.87□□□□□ -0.67
USP48-208ENST00000479177 GOLGA3Q08378 1498 aa10.87□□□□□ -0.67
USP48-208ENST00000479177 GRIN2BQ13224 1484 aa10.87□□□□□ -0.67
USP48-208ENST00000479177 ADAMTS12P58397 1594 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms