RNA–Protein interactions for RNA: ENST00000471297.1

SMNDC1-204, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 823 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-204ENST00000471297 ABCC8Q09428 1581 aa9.97□□□□□ -0.81
SMNDC1-204ENST00000471297 FBXO22Q8NEZ5 403 aa9.96□□□□□ -0.82
SMNDC1-204ENST00000471297 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.96□□□□□ -0.822e-9■■□□□ 11.5
SMNDC1-204ENST00000471297 HAP1P54257 671 aaPredicted RBP9.95□□□□□ -0.82
SMNDC1-204ENST00000471297 SLC24A1O60721 1099 aa9.93□□□□□ -0.82
SMNDC1-204ENST00000471297 IER5LQ5T953 404 aa9.93□□□□□ -0.82
SMNDC1-204ENST00000471297 LAMC3Q9Y6N6 1575 aa9.92□□□□□ -0.82
SMNDC1-204ENST00000471297 PRDM2Q13029 1718 aa9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 IRX5P78411 483 aaPredicted RBP9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 ILDR1Q86SU0 546 aaPredicted RBP9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 SLC39A7Q92504 469 aa9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 MS4A4AQ96JQ5 239 aa9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 OCEL1Q9H607 264 aa9.91□□□□□ -0.82
SMNDC1-204ENST00000471297 PPP1R37O75864 691 aa9.9□□□□□ -0.82
SMNDC1-204ENST00000471297 C7P10643 843 aa9.89□□□□□ -0.83
SMNDC1-204ENST00000471297 TSHZ2Q9NRE2 1034 aa9.89□□□□□ -0.83
SMNDC1-204ENST00000471297 EEA1Q15075 1411 aa9.89□□□□□ -0.83
SMNDC1-204ENST00000471297 PDS5BQ9NTI5 1447 aa9.89□□□□□ -0.83
SMNDC1-204ENST00000471297 FANCD2Q9BXW9 1451 aa9.88□□□□□ -0.83
SMNDC1-204ENST00000471297 SEC24BO95487 1268 aa9.88□□□□□ -0.83
SMNDC1-204ENST00000471297 TOP2BQ02880 1626 aa9.88□□□□□ -0.83
SMNDC1-204ENST00000471297 SYNJ1O43426 1573 aa9.88□□□□□ -0.83
SMNDC1-204ENST00000471297 DPY19L2Q6NUT2 758 aa9.87□□□□□ -0.83
SMNDC1-204ENST00000471297 NESP48681 1621 aa9.86□□□□□ -0.83
SMNDC1-204ENST00000471297 PLCG2P16885 1265 aa9.86□□□□□ -0.83
SMNDC1-204ENST00000471297 FAM9AQ8IZU1 332 aaPredicted RBP9.86□□□□□ -0.83
SMNDC1-204ENST00000471297 PDCD7Q8N8D1 485 aaKnown RBP9.86□□□□□ -0.83
SMNDC1-204ENST00000471297 METRNQ9UJH8 293 aa9.86□□□□□ -0.83
SMNDC1-204ENST00000471297 BIVM-ERCC5R4GMW8 1640 aa9.85□□□□□ -0.83
SMNDC1-204ENST00000471297 COLQQ9Y215 455 aaPredicted RBP9.85□□□□□ -0.83
SMNDC1-204ENST00000471297 CUX1P39880 1505 aa9.84□□□□□ -0.83
SMNDC1-204ENST00000471297 POTEFA5A3E0 1075 aa9.84□□□□□ -0.83
SMNDC1-204ENST00000471297 LOC105371045A0A1W2PR82 267 aa9.83□□□□□ -0.84
SMNDC1-204ENST00000471297 SOGA1O94964 1423 aa9.82□□□□□ -0.84
SMNDC1-204ENST00000471297 CEP164Q9UPV0 1460 aa9.82□□□□□ -0.84
SMNDC1-204ENST00000471297 VSIG10Q8N0Z9 540 aa9.8□□□□□ -0.84
SMNDC1-204ENST00000471297 L3MBTL3Q96JM7 780 aaPredicted RBP9.79□□□□□ -0.84
SMNDC1-204ENST00000471297 DNMBPQ6XZF7 1577 aa9.79□□□□□ -0.84
SMNDC1-204ENST00000471297 TOPBP1Q92547 1522 aa9.77□□□□□ -0.84
SMNDC1-204ENST00000471297 G3V3G9 751 aa9.77□□□□□ -0.85
SMNDC1-204ENST00000471297 BOLA1Q9Y3E2 137 aa9.77□□□□□ -0.85
SMNDC1-204ENST00000471297 RUSC2Q8N2Y8 1516 aa9.77□□□□□ -0.85
SMNDC1-204ENST00000471297 CADPS2Q86UW7 1296 aa9.76□□□□□ -0.85
SMNDC1-204ENST00000471297 KDM2AQ9Y2K7 1162 aa9.76□□□□□ -0.85
SMNDC1-204ENST00000471297 KIF27Q86VH2 1401 aa9.75□□□□□ -0.85
SMNDC1-204ENST00000471297 FGD5Q6ZNL6 1462 aa9.75□□□□□ -0.85
SMNDC1-204ENST00000471297 MICALL2Q8IY33 904 aa9.75□□□□□ -0.85
SMNDC1-204ENST00000471297 URB2Q14146 1524 aaKnown RBP9.73□□□□□ -0.85
SMNDC1-204ENST00000471297 TMEM121BQ9BXQ6 578 aaPredicted RBP9.73□□□□□ -0.85
SMNDC1-204ENST00000471297 MRC2Q9UBG0 1479 aa9.72□□□□□ -0.85
SMNDC1-204ENST00000471297 KIF21AQ7Z4S6 1674 aa9.71□□□□□ -0.85
SMNDC1-204ENST00000471297 POLA1P09884 1462 aaPredicted RBP9.71□□□□□ -0.86
SMNDC1-204ENST00000471297 CUX2O14529 1486 aa9.7□□□□□ -0.86
SMNDC1-204ENST00000471297 ABCA10Q8WWZ4 1543 aa9.7□□□□□ -0.86
SMNDC1-204ENST00000471297 POTEB2H3BUK9 544 aa9.69□□□□□ -0.86
SMNDC1-204ENST00000471297 PDE4AP27815 886 aa9.69□□□□□ -0.86
SMNDC1-204ENST00000471297 ERCC6Q03468 1493 aa9.69□□□□□ -0.86
SMNDC1-204ENST00000471297 GOLGA3Q08378 1498 aa9.69□□□□□ -0.86
SMNDC1-204ENST00000471297 TNIKQ9UKE5 1360 aa9.69□□□□□ -0.86
SMNDC1-204ENST00000471297 KIF21BO75037 1637 aa9.68□□□□□ -0.86
SMNDC1-204ENST00000471297 UBTFP17480 764 aaKnown RBP9.68□□□□□ -0.86
SMNDC1-204ENST00000471297 RAD54L2Q9Y4B4 1467 aa9.67□□□□□ -0.86
SMNDC1-204ENST00000471297 IGF1RP08069 1367 aa9.67□□□□□ -0.86
SMNDC1-204ENST00000471297 PRXQ9BXM0 1461 aa9.66□□□□□ -0.86
SMNDC1-204ENST00000471297 NCKAP5LQ9HCH0 1330 aa9.66□□□□□ -0.86
SMNDC1-204ENST00000471297 LARP6Q9BRS8 491 aaKnown RBP9.66□□□□□ -0.86
SMNDC1-204ENST00000471297 WDR70Q9NW82 654 aa9.66□□□□□ -0.86
SMNDC1-204ENST00000471297 WDR62O43379 1518 aa9.66□□□□□ -0.86
SMNDC1-204ENST00000471297 POTEJP0CG39 1038 aa9.65□□□□□ -0.86
SMNDC1-204ENST00000471297 CRISPLD2Q9H0B8 497 aa9.65□□□□□ -0.86
SMNDC1-204ENST00000471297 GPHNQ9NQX3 736 aaPredicted RBP9.64□□□□□ -0.87
SMNDC1-204ENST00000471297 ERICH3Q5RHP9 1530 aa9.64□□□□□ -0.87
SMNDC1-204ENST00000471297 C3orf67Q6ZVT6 689 aa9.63□□□□□ -0.87
SMNDC1-204ENST00000471297 TMC2Q8TDI7 906 aa9.63□□□□□ -0.87
SMNDC1-204ENST00000471297 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.63□□□□□ -0.87
SMNDC1-204ENST00000471297 CARMIL1Q5VZK9 1371 aa9.63□□□□□ -0.87
SMNDC1-204ENST00000471297 IFT140Q96RY7 1462 aa9.62□□□□□ -0.87
SMNDC1-204ENST00000471297 RAPGEF2Q9Y4G8 1499 aa9.61□□□□□ -0.87
SMNDC1-204ENST00000471297 TMEM92Q6UXU6 159 aa9.61□□□□□ -0.87
SMNDC1-204ENST00000471297 C2orf72A6NCS6 295 aa9.6□□□□□ -0.87
SMNDC1-204ENST00000471297 DDX27Q96GQ7 796 aaKnown RBP9.6□□□□□ -0.87
SMNDC1-204ENST00000471297 TDRD9Q8NDG6 1382 aaKnown RBP9.6□□□□□ -0.87
SMNDC1-204ENST00000471297 WDR97A6NE52 1622 aa9.6□□□□□ -0.87
SMNDC1-204ENST00000471297 TARBP1Q13395 1621 aaKnown RBP9.6□□□□□ -0.87
SMNDC1-204ENST00000471297 GAPVD1Q14C86 1478 aa9.59□□□□□ -0.87
SMNDC1-204ENST00000471297 THOC2Q8NI27 1593 aaKnown RBP9.59□□□□□ -0.87
SMNDC1-204ENST00000471297 KIF3CO14782 793 aa9.59□□□□□ -0.87
SMNDC1-204ENST00000471297 MFSD10Q14728 455 aa9.59□□□□□ -0.87
SMNDC1-204ENST00000471297 CEP162Q5TB80 1403 aa9.58□□□□□ -0.88
SMNDC1-204ENST00000471297 MAMSTRQ6ZN01 415 aa9.58□□□□□ -0.88
SMNDC1-204ENST00000471297 ABCA5Q8WWZ7 1642 aa9.57□□□□□ -0.88
SMNDC1-204ENST00000471297 FOXK1P85037 733 aa9.57□□□□□ -0.88
SMNDC1-204ENST00000471297 DSG2Q14126 1118 aa9.57□□□□□ -0.88
SMNDC1-204ENST00000471297 PPP1R15BQ5SWA1 713 aa9.56□□□□□ -0.88
SMNDC1-204ENST00000471297 LHX8Q68G74 356 aa9.56□□□□□ -0.88
SMNDC1-204ENST00000471297 SCUBE2Q9NQ36 999 aa9.56□□□□□ -0.88
SMNDC1-204ENST00000471297 CUL7Q14999 1698 aa9.55□□□□□ -0.88
SMNDC1-204ENST00000471297 GRIN2BQ13224 1484 aa9.54□□□□□ -0.88
SMNDC1-204ENST00000471297 E2F4Q16254 413 aa9.54□□□□□ -0.88
SMNDC1-204ENST00000471297 PLPP6Q8IY26 295 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms