RNA–Protein interactions for RNA: ENST00000471297.1

SMNDC1-204, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 823 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-204ENST00000471297 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
SMNDC1-204ENST00000471297 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
SMNDC1-204ENST00000471297 PHF23Q9BUL5 403 aaPredicted RBP17.58■□□□□ 0.4
SMNDC1-204ENST00000471297 SENP3Q9H4L4 574 aaPredicted RBP17.23■□□□□ 0.35
SMNDC1-204ENST00000471297 PLPPR3Q6T4P5 718 aa16.25■□□□□ 0.19
SMNDC1-204ENST00000471297 FOXD1Q16676 465 aa16■□□□□ 0.15
SMNDC1-204ENST00000471297 PPP6R1Q9UPN7 881 aa15.5■□□□□ 0.07
SMNDC1-204ENST00000471297 ADRA2BP18089 450 aa15.49■□□□□ 0.07
SMNDC1-204ENST00000471297 PIAS4Q8N2W9 510 aaPredicted RBP15.1■□□□□ 0.01
SMNDC1-204ENST00000471297 MSH5O43196 834 aa14.7□□□□□ -0.06
SMNDC1-204ENST00000471297 PPP4R3CPQ6ZMV5 832 aa14.35□□□□□ -0.11
SMNDC1-204ENST00000471297 SCAF1Q9H7N4 1312 aaKnown RBP14.16□□□□□ -0.14
SMNDC1-204ENST00000471297 KCNA4P22459 653 aa14.11□□□□□ -0.15
SMNDC1-204ENST00000471297 MAPK8IP2Q13387 824 aaPredicted RBP14.04□□□□□ -0.16
SMNDC1-204ENST00000471297 NCBP3Q53F19 620 aaKnown RBP14□□□□□ -0.17
SMNDC1-204ENST00000471297 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
SMNDC1-204ENST00000471297 NPM3O75607 178 aaKnown RBP13.78□□□□□ -0.2
SMNDC1-204ENST00000471297 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
SMNDC1-204ENST00000471297 NISCHQ9Y2I1 1504 aa13.67□□□□□ -0.22
SMNDC1-204ENST00000471297 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
SMNDC1-204ENST00000471297 HOXD11P31277 338 aaPredicted RBP13.53□□□□□ -0.24
SMNDC1-204ENST00000471297 SLC4A1APQ9BWU0 796 aaKnown RBP13.45□□□□□ -0.26
SMNDC1-204ENST00000471297 DNAJC5BQ9UF47 199 aa13.33□□□□□ -0.28
SMNDC1-204ENST00000471297 POTEDQ86YR6 584 aa13.32□□□□□ -0.28
SMNDC1-204ENST00000471297 DCAF8L1A6NGE4 600 aa13.21□□□□□ -0.29
SMNDC1-204ENST00000471297 EHMT2Q96KQ7 1210 aa13.18□□□□□ -0.3
SMNDC1-204ENST00000471297 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
SMNDC1-204ENST00000471297 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
SMNDC1-204ENST00000471297 ZBTB22O15209 634 aa12.97□□□□□ -0.33
SMNDC1-204ENST00000471297 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
SMNDC1-204ENST00000471297 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.92□□□□□ -0.341e-9■□□□□ 10
SMNDC1-204ENST00000471297 MYCNP04198 464 aaPredicted RBP12.72□□□□□ -0.37
SMNDC1-204ENST00000471297 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
SMNDC1-204ENST00000471297 RNF39Q9H2S5 420 aa12.6□□□□□ -0.39
SMNDC1-204ENST00000471297 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.57□□□□□ -0.4
SMNDC1-204ENST00000471297 HNRNPUL2Q1KMD3 747 aaKnown RBP12.57□□□□□ -0.4
SMNDC1-204ENST00000471297 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
SMNDC1-204ENST00000471297 ATXN8OSP0DMR3 200 aa12.49□□□□□ -0.41
SMNDC1-204ENST00000471297 C1QBPQ07021 282 aaKnown RBP12.47□□□□□ -0.41
SMNDC1-204ENST00000471297 APLP2Q06481 763 aa12.41□□□□□ -0.42
SMNDC1-204ENST00000471297 ATF5Q9Y2D1 282 aaPredicted RBP12.4□□□□□ -0.42
SMNDC1-204ENST00000471297 SPINK5Q9NQ38 1064 aaPredicted RBP12.33□□□□□ -0.44
SMNDC1-204ENST00000471297 CAPN15O75808 1086 aa12.28□□□□□ -0.44
SMNDC1-204ENST00000471297 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
SMNDC1-204ENST00000471297 CACNB1Q02641 598 aaPredicted RBP12.24□□□□□ -0.45
SMNDC1-204ENST00000471297 ZNF219Q9P2Y4 722 aaPredicted RBP12.22□□□□□ -0.45
SMNDC1-204ENST00000471297 POLA2Q14181 598 aa12.08□□□□□ -0.48
SMNDC1-204ENST00000471297 ABCB7O75027 752 aa12.05□□□□□ -0.48
SMNDC1-204ENST00000471297 DSG3P32926 999 aa12.04□□□□□ -0.48
SMNDC1-204ENST00000471297 CCDC180Q9P1Z9 1646 aa11.91□□□□□ -0.5
SMNDC1-204ENST00000471297 FBLN2P98095 1184 aa11.87□□□□□ -0.51
SMNDC1-204ENST00000471297 MKRN4PQ13434 485 aaPredicted RBP11.85□□□□□ -0.51
SMNDC1-204ENST00000471297 ZBTB12Q9Y330 459 aaPredicted RBP11.83□□□□□ -0.52
SMNDC1-204ENST00000471297 FKBP8Q14318 412 aa11.75□□□□□ -0.53
SMNDC1-204ENST00000471297 SPDYE4A6NLX3 237 aa11.64□□□□□ -0.55
SMNDC1-204ENST00000471297 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
SMNDC1-204ENST00000471297 ZNF692Q9BU19 519 aaPredicted RBP11.55□□□□□ -0.56
SMNDC1-204ENST00000471297 SPDYE2BA6NHP3 402 aa11.54□□□□□ -0.56
SMNDC1-204ENST00000471297 SPDYE6P0CI01 402 aa11.54□□□□□ -0.56
SMNDC1-204ENST00000471297 SPDYE2Q495Y8 402 aa11.54□□□□□ -0.56
SMNDC1-204ENST00000471297 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
SMNDC1-204ENST00000471297 RBM42Q9BTD8 480 aaKnown RBP11.45□□□□□ -0.58
SMNDC1-204ENST00000471297 SSUH2Q9Y2M2 353 aa11.45□□□□□ -0.58
SMNDC1-204ENST00000471297 PROM2Q8N271 834 aa11.42□□□□□ -0.58
SMNDC1-204ENST00000471297 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
SMNDC1-204ENST00000471297 AKT1S1Q96B36 256 aa11.35□□□□□ -0.59
SMNDC1-204ENST00000471297 DCAF1Q9Y4B6 1507 aa11.34□□□□□ -0.59
SMNDC1-204ENST00000471297 DCAF8L2P0C7V8 631 aa11.31□□□□□ -0.6
SMNDC1-204ENST00000471297 FBXO3Q9UK99 471 aa11.3□□□□□ -0.6
SMNDC1-204ENST00000471297 ABCC9O60706 1549 aa11.27□□□□□ -0.61
SMNDC1-204ENST00000471297 REM2Q8IYK8 340 aaPredicted RBP11.25□□□□□ -0.61
SMNDC1-204ENST00000471297 MYO15BQ96JP2 1530 aa11.23□□□□□ -0.61
SMNDC1-204ENST00000471297 STAG3Q9UJ98 1225 aa11.22□□□□□ -0.61
SMNDC1-204ENST00000471297 SPDYE1Q8NFV5 336 aaPredicted RBP11.19□□□□□ -0.62
SMNDC1-204ENST00000471297 CLEC11AQ9Y240 323 aa11.17□□□□□ -0.62
SMNDC1-204ENST00000471297 NACADO15069 1562 aa11.14□□□□□ -0.63
SMNDC1-204ENST00000471297 VASPP50552 380 aaPredicted RBP11.12□□□□□ -0.63
SMNDC1-204ENST00000471297 PITPNM1O00562 1244 aa11.1□□□□□ -0.63
SMNDC1-204ENST00000471297 SHROOM4Q9ULL8 1493 aa11.08□□□□□ -0.64
SMNDC1-204ENST00000471297 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
SMNDC1-204ENST00000471297 MIER1Q8N108 512 aa11.07□□□□□ -0.64
SMNDC1-204ENST00000471297 RB1CC1Q8TDY2 1594 aa11.03□□□□□ -0.64
SMNDC1-204ENST00000471297 PLCD3Q8N3E9 789 aa11.03□□□□□ -0.64
SMNDC1-204ENST00000471297 IFNLR1Q8IU57 520 aaPredicted RBP11.01□□□□□ -0.65
SMNDC1-204ENST00000471297 PLEKHG5O94827 1062 aa10.97□□□□□ -0.65
SMNDC1-204ENST00000471297 KLHL34Q8N239 644 aa10.96□□□□□ -0.65
SMNDC1-204ENST00000471297 CHRDL2Q6WN34 429 aa10.95□□□□□ -0.66
SMNDC1-204ENST00000471297 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
SMNDC1-204ENST00000471297 SCRIBQ14160 1630 aa10.91□□□□□ -0.66
SMNDC1-204ENST00000471297 FXR2P51116 673 aaKnown RBP eCLIP10.89□□□□□ -0.67
SMNDC1-204ENST00000471297 ZBTB47Q9UFB7 747 aaPredicted RBP10.88□□□□□ -0.67
SMNDC1-204ENST00000471297 CHADLQ6NUI6 762 aa10.87□□□□□ -0.67
SMNDC1-204ENST00000471297 AMER1Q5JTC6 1135 aaPredicted RBP10.85□□□□□ -0.67
SMNDC1-204ENST00000471297 SPOCK2Q92563 424 aa10.85□□□□□ -0.67
SMNDC1-204ENST00000471297 PRKAR2AP13861 404 aaKnown RBP10.84□□□□□ -0.67
SMNDC1-204ENST00000471297 PIP4P2Q8N4L2 257 aa10.84□□□□□ -0.67
SMNDC1-204ENST00000471297 MNX1P50219 401 aaPredicted RBP10.83□□□□□ -0.68
SMNDC1-204ENST00000471297 RTN4Q9NQC3 1192 aaKnown RBP10.83□□□□□ -0.68
SMNDC1-204ENST00000471297 NPM1P06748 294 aaKnown RBP eCLIP10.77□□□□□ -0.69
SMNDC1-204ENST00000471297 FARP1Q9Y4F1 1045 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms