RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 NEFMP07197 916 aa10.84□□□□□ -0.67
HMGXB4-202ENST00000418170 CEP170Q5SW79 1584 aa10.84□□□□□ -0.67
HMGXB4-202ENST00000418170 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
HMGXB4-202ENST00000418170 HFM1A2PYH4 1435 aa10.83□□□□□ -0.68
HMGXB4-202ENST00000418170 PTPN23Q9H3S7 1636 aa10.83□□□□□ -0.68
HMGXB4-202ENST00000418170 MAGI3Q5TCQ9 1506 aa10.82□□□□□ -0.68
HMGXB4-202ENST00000418170 NCOA1Q15788 1441 aa10.81□□□□□ -0.68
HMGXB4-202ENST00000418170 EIF4G2P78344 907 aaKnown RBP eCLIP10.81□□□□□ -0.68
HMGXB4-202ENST00000418170 NUDCQ9Y266 331 aa10.81□□□□□ -0.68
HMGXB4-202ENST00000418170 CCDC7Q96M83 1385 aa10.8□□□□□ -0.68
HMGXB4-202ENST00000418170 PPM1GO15355 546 aaPredicted RBP10.8□□□□□ -0.68
HMGXB4-202ENST00000418170 GRIN2BQ13224 1484 aa10.8□□□□□ -0.68
HMGXB4-202ENST00000418170 LAS1LQ9Y4W2 734 aaKnown RBP10.79□□□□□ -0.68
HMGXB4-202ENST00000418170 POLR1AO95602 1720 aaPredicted RBP10.79□□□□□ -0.68
HMGXB4-202ENST00000418170 FGD6Q6ZV73 1430 aa10.79□□□□□ -0.68
HMGXB4-202ENST00000418170 ARHGEF11O15085 1522 aa10.78□□□□□ -0.68
HMGXB4-202ENST00000418170 DISP1Q96F81 1524 aa10.78□□□□□ -0.68
HMGXB4-202ENST00000418170 UGGT2Q9NYU1 1516 aa10.78□□□□□ -0.68
HMGXB4-202ENST00000418170 IQGAP2Q13576 1575 aa10.78□□□□□ -0.68
HMGXB4-202ENST00000418170 NAIPQ13075 1403 aa10.77□□□□□ -0.68
HMGXB4-202ENST00000418170 BRPF3Q9ULD4 1205 aa10.77□□□□□ -0.68
HMGXB4-202ENST00000418170 FYCO1Q9BQS8 1478 aa10.77□□□□□ -0.69
HMGXB4-202ENST00000418170 PTPRKQ15262 1439 aa10.77□□□□□ -0.69
HMGXB4-202ENST00000418170 NPM2Q86SE8 214 aaKnown RBP10.76□□□□□ -0.69
HMGXB4-202ENST00000418170 TCERG1O14776 1098 aaKnown RBP10.76□□□□□ -0.69
HMGXB4-202ENST00000418170 FHOD3Q2V2M9 1422 aa10.76□□□□□ -0.69
HMGXB4-202ENST00000418170 CHD1O14646 1710 aa10.76□□□□□ -0.69
HMGXB4-202ENST00000418170 KIAA0556O60303 1618 aa10.76□□□□□ -0.69
HMGXB4-202ENST00000418170 GSE1Q14687 1217 aa10.75□□□□□ -0.69
HMGXB4-202ENST00000418170 FMN1Q68DA7 1419 aa10.75□□□□□ -0.69
HMGXB4-202ENST00000418170 HECW1Q76N89 1606 aa10.74□□□□□ -0.69
HMGXB4-202ENST00000418170 PDE4AP27815 886 aa10.74□□□□□ -0.69
HMGXB4-202ENST00000418170 GRIN2AQ12879 1464 aa10.74□□□□□ -0.69
HMGXB4-202ENST00000418170 EIF5BO60841 1220 aaKnown RBP10.73□□□□□ -0.69
HMGXB4-202ENST00000418170 BACH2Q9BYV9 841 aa10.73□□□□□ -0.69
HMGXB4-202ENST00000418170 CASKIN1Q8WXD9 1431 aa10.73□□□□□ -0.69
HMGXB4-202ENST00000418170 MS4A1P11836 297 aa10.73□□□□□ -0.69
HMGXB4-202ENST00000418170 SHROOM2Q13796 1616 aa10.72□□□□□ -0.69
HMGXB4-202ENST00000418170 DENND4BO75064 1496 aaPredicted RBP10.72□□□□□ -0.69
HMGXB4-202ENST00000418170 MAGI1Q96QZ7 1491 aaPredicted RBP10.71□□□□□ -0.7
HMGXB4-202ENST00000418170 KIF7Q2M1P5 1343 aa10.7□□□□□ -0.7
HMGXB4-202ENST00000418170 NUP160Q12769 1436 aa10.7□□□□□ -0.7
HMGXB4-202ENST00000418170 RSPH6AQ9H0K4 717 aa10.7□□□□□ -0.7
HMGXB4-202ENST00000418170 ATP1B4Q9UN42 357 aaPredicted RBP10.7□□□□□ -0.7
HMGXB4-202ENST00000418170 GCC2Q8IWJ2 1684 aa10.69□□□□□ -0.7
HMGXB4-202ENST00000418170 SPATA31E1Q6ZUB1 1445 aa10.69□□□□□ -0.7
HMGXB4-202ENST00000418170 DDRGK1Q96HY6 314 aa10.69□□□□□ -0.7
HMGXB4-202ENST00000418170 NFKBIBQ15653 356 aa10.68□□□□□ -0.7
HMGXB4-202ENST00000418170 DHX29Q7Z478 1369 aaKnown RBP10.68□□□□□ -0.7
HMGXB4-202ENST00000418170 FRAT1Q92837 279 aaPredicted RBP10.67□□□□□ -0.7
HMGXB4-202ENST00000418170 SYNJ2O15056 1496 aa10.67□□□□□ -0.7
HMGXB4-202ENST00000418170 P3H3Q8IVL6 736 aa10.67□□□□□ -0.7
HMGXB4-202ENST00000418170 L3MBTL2Q969R5 705 aa10.67□□□□□ -0.7
HMGXB4-202ENST00000418170 RRP1P56182 461 aaKnown RBP10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 FAM43AQ8N2R8 423 aa10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 ERCC6Q03468 1493 aa10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 MYOM3Q5VTT5 1437 aa10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 KIAA0586Q9BVV6 1533 aa10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 EXOC6Q8TAG9 804 aa10.66□□□□□ -0.7
HMGXB4-202ENST00000418170 MTUS2Q5JR59 1369 aa10.64□□□□□ -0.71
HMGXB4-202ENST00000418170 ADCY10Q96PN6 1610 aa10.64□□□□□ -0.71
HMGXB4-202ENST00000418170 PNISRQ8TF01 805 aaKnown RBP10.64□□□□□ -0.71
HMGXB4-202ENST00000418170 PKNOX2Q96KN3 472 aa10.64□□□□□ -0.71
HMGXB4-202ENST00000418170 RAPGEF6Q8TEU7 1601 aa10.63□□□□□ -0.71
HMGXB4-202ENST00000418170 TEX14Q8IWB6 1497 aa10.63□□□□□ -0.71
HMGXB4-202ENST00000418170 NBPF8Q3BBV2 869 aa10.63□□□□□ -0.71
HMGXB4-202ENST00000418170 SUPT6HQ7KZ85 1726 aaKnown RBP10.63□□□□□ -0.71
HMGXB4-202ENST00000418170 MIA2Q96PC5 1412 aa10.62□□□□□ -0.71
HMGXB4-202ENST00000418170 NUP153P49790 1475 aaKnown RBP10.62□□□□□ -0.71
HMGXB4-202ENST00000418170 RPRD2Q5VT52 1461 aaKnown RBP10.62□□□□□ -0.71
HMGXB4-202ENST00000418170 KDM6BO15054 1643 aa10.62□□□□□ -0.71
HMGXB4-202ENST00000418170 CDK13Q14004 1512 aaKnown RBP10.62□□□□□ -0.71
HMGXB4-202ENST00000418170 ABCA8O94911 1581 aa10.61□□□□□ -0.71
HMGXB4-202ENST00000418170 ERCC6L2Q5T890 1561 aa10.61□□□□□ -0.71
HMGXB4-202ENST00000418170 LRPPRCP42704 1394 aaKnown RBP10.61□□□□□ -0.71
HMGXB4-202ENST00000418170 MPHOSPH9Q99550 1183 aa10.6□□□□□ -0.71
HMGXB4-202ENST00000418170 CLASP1Q7Z460 1538 aa10.6□□□□□ -0.71
HMGXB4-202ENST00000418170 EPRSP07814 1512 aaKnown RBP10.6□□□□□ -0.71
HMGXB4-202ENST00000418170 RCAN3Q9UKA8 241 aa10.6□□□□□ -0.71
HMGXB4-202ENST00000418170 RRP7BPQ9NSQ0 103 aa10.6□□□□□ -0.71
HMGXB4-202ENST00000418170 BCORL1Q5H9F3 1711 aa10.59□□□□□ -0.71
HMGXB4-202ENST00000418170 EHBP1L1Q8N3D4 1523 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 SENP3-EIF4A1A0A087X0R7 540 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 TMC1Q8TDI8 760 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 TCOF1Q13428 1488 aaKnown RBP10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 DCAF11Q8TEB1 546 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 ANKRD30BQ9BXX2 1392 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 KIF14Q15058 1648 aa10.58□□□□□ -0.72
HMGXB4-202ENST00000418170 CDC42BPAQ5VT25 1732 aa10.57□□□□□ -0.72
HMGXB4-202ENST00000418170 DAXXQ9UER7 740 aaPredicted RBP10.57□□□□□ -0.72
HMGXB4-202ENST00000418170 GLIPR1L2Q4G1C9 344 aa10.57□□□□□ -0.72
HMGXB4-202ENST00000418170 ARID4BQ4LE39 1312 aaPredicted RBP10.56□□□□□ -0.72
HMGXB4-202ENST00000418170 SLC4A3P48751 1232 aa10.56□□□□□ -0.72
HMGXB4-202ENST00000418170 CROCC2H7BZ55 1655 aa10.56□□□□□ -0.72
HMGXB4-202ENST00000418170 CNGB1Q14028 1251 aaPredicted RBP10.55□□□□□ -0.72
HMGXB4-202ENST00000418170 BRD4O60885 1362 aaPredicted RBP10.55□□□□□ -0.72
HMGXB4-202ENST00000418170 FRAT2O75474 233 aaPredicted RBP10.55□□□□□ -0.72
HMGXB4-202ENST00000418170 FOXD1Q16676 465 aa10.55□□□□□ -0.72
HMGXB4-202ENST00000418170 PDE3BQ13370 1112 aa10.55□□□□□ -0.72
HMGXB4-202ENST00000418170 CHIC2Q9UKJ5 165 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms