RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 POLA1P09884 1462 aaPredicted RBP21.45■■□□□ 1.03
PCDH1-203ENST00000394536 ST20-MTHFSA0A0A6YYL1 179 aa21.45■■□□□ 1.02
PCDH1-203ENST00000394536 NUP155O75694 1391 aa21.44■■□□□ 1.02
PCDH1-203ENST00000394536 PTPRKQ15262 1439 aa21.44■■□□□ 1.02
PCDH1-203ENST00000394536 FANCIQ9NVI1 1328 aa21.44■■□□□ 1.02
PCDH1-203ENST00000394536 PDS5BQ9NTI5 1447 aa21.43■■□□□ 1.02
PCDH1-203ENST00000394536 CANXP27824 592 aaKnown RBP21.43■■□□□ 1.02
PCDH1-203ENST00000394536 CNTLNQ9NXG0 1405 aa21.41■■□□□ 1.02
PCDH1-203ENST00000394536 WDR43Q15061 677 aaKnown RBP eCLIP21.41■■□□□ 1.02
PCDH1-203ENST00000394536 DNAJC5BQ9UF47 199 aa21.41■■□□□ 1.02
PCDH1-203ENST00000394536 MAP3K1Q13233 1512 aa21.39■■□□□ 1.01
PCDH1-203ENST00000394536 TOPBP1Q92547 1522 aa21.38■■□□□ 1.01
PCDH1-203ENST00000394536 HNRNPMP52272 730 aaKnown RBP eCLIP21.37■■□□□ 1.01
PCDH1-203ENST00000394536 USP47Q96K76 1375 aa21.37■■□□□ 1.01
PCDH1-203ENST00000394536 RCAN3Q9UKA8 241 aa21.37■■□□□ 1.01
PCDH1-203ENST00000394536 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.36■■□□□ 1.01
PCDH1-203ENST00000394536 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.01
PCDH1-203ENST00000394536 RTN4Q9NQC3 1192 aaKnown RBP21.34■■□□□ 1.01
PCDH1-203ENST00000394536 CHGAP10645 457 aaKnown RBP21.34■■□□□ 1.01
PCDH1-203ENST00000394536 NEFMP07197 916 aa21.33■■□□□ 1
PCDH1-203ENST00000394536 EXOC6Q8TAG9 804 aa21.32■■□□□ 1
PCDH1-203ENST00000394536 PLIN1O60240 522 aa21.32■■□□□ 1
PCDH1-203ENST00000394536 AKNAQ7Z591 1439 aa21.31■■□□□ 1
PCDH1-203ENST00000394536 EFCAB5A4FU69 1503 aa21.3■■□□□ 1
PCDH1-203ENST00000394536 SENP3Q9H4L4 574 aaPredicted RBP21.3■■□□□ 1
PCDH1-203ENST00000394536 RGS3P49796 1198 aa21.3■■□□□ 1
PCDH1-203ENST00000394536 IPO9Q96P70 1041 aaKnown RBP21.3■■□□□ 1
PCDH1-203ENST00000394536 ROCK2O75116 1388 aaKnown RBP21.29■■□□□ 1
PCDH1-203ENST00000394536 ANKRD30AQ9BXX3 1397 aa21.29■■□□□ 1
PCDH1-203ENST00000394536 KNSTRNQ9Y448 316 aa21.29■■□□□ 1
PCDH1-203ENST00000394536 PAK3O75914 559 aaPredicted RBP21.28■■□□□ 1
PCDH1-203ENST00000394536 ABCA10Q8WWZ4 1543 aa21.26■□□□□ 0.99
PCDH1-203ENST00000394536 RALBP1Q15311 655 aa21.25■□□□□ 0.99
PCDH1-203ENST00000394536 NEUROD2Q15784 382 aa21.23■□□□□ 0.99
PCDH1-203ENST00000394536 JPH4Q96JJ6 628 aa21.23■□□□□ 0.99
PCDH1-203ENST00000394536 PRKCSHP14314 528 aaPredicted RBP21.23■□□□□ 0.99
PCDH1-203ENST00000394536 NLRP13Q86W25 1043 aa21.23■□□□□ 0.99
PCDH1-203ENST00000394536 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.23■□□□□ 0.99
PCDH1-203ENST00000394536 KTN1Q86UP2 1357 aaKnown RBP21.23■□□□□ 0.99
PCDH1-203ENST00000394536 CDK13Q14004 1512 aaKnown RBP21.21■□□□□ 0.99
PCDH1-203ENST00000394536 CC2D2AQ9P2K1 1620 aa21.2■□□□□ 0.98
PCDH1-203ENST00000394536 TMF1P82094 1093 aa21.2■□□□□ 0.98
PCDH1-203ENST00000394536 MYBBP1AQ9BQG0 1328 aaKnown RBP21.2■□□□□ 0.98
PCDH1-203ENST00000394536 RRP1P56182 461 aaKnown RBP21.19■□□□□ 0.98
PCDH1-203ENST00000394536 ARXQ96QS3 562 aa21.19■□□□□ 0.98
PCDH1-203ENST00000394536 PNISRQ8TF01 805 aaKnown RBP21.18■□□□□ 0.98
PCDH1-203ENST00000394536 PTPN23Q9H3S7 1636 aa21.18■□□□□ 0.98
PCDH1-203ENST00000394536 TNNT2P45379 298 aaPredicted RBP21.18■□□□□ 0.98
PCDH1-203ENST00000394536 CDCA7LQ96GN5 454 aa21.18■□□□□ 0.98
PCDH1-203ENST00000394536 DNMBPQ6XZF7 1577 aa21.18■□□□□ 0.98
PCDH1-203ENST00000394536 KIF15Q9NS87 1388 aa21.18■□□□□ 0.98
PCDH1-203ENST00000394536 PANK3Q9H999 370 aa21.17■□□□□ 0.98
PCDH1-203ENST00000394536 ANKRD30BQ9BXX2 1392 aa21.16■□□□□ 0.98
PCDH1-203ENST00000394536 TCERG1O14776 1098 aaKnown RBP21.16■□□□□ 0.98
PCDH1-203ENST00000394536 PDE4AP27815 886 aa21.15■□□□□ 0.98
PCDH1-203ENST00000394536 EHBP1L1Q8N3D4 1523 aa21.15■□□□□ 0.98
PCDH1-203ENST00000394536 EIF5BO60841 1220 aaKnown RBP21.14■□□□□ 0.97
PCDH1-203ENST00000394536 SLC4A3P48751 1232 aa21.13■□□□□ 0.97
PCDH1-203ENST00000394536 PRG4Q92954 1404 aaPredicted RBP21.12■□□□□ 0.97
PCDH1-203ENST00000394536 EPRSP07814 1512 aaKnown RBP21.12■□□□□ 0.97
PCDH1-203ENST00000394536 DDRGK1Q96HY6 314 aa21.11■□□□□ 0.97
PCDH1-203ENST00000394536 NBPF1Q3BBV0 1214 aa21.11■□□□□ 0.97
PCDH1-203ENST00000394536 SUPT6HQ7KZ85 1726 aaKnown RBP21.11■□□□□ 0.97
PCDH1-203ENST00000394536 NCOA1Q15788 1441 aa21.1■□□□□ 0.97
PCDH1-203ENST00000394536 PPM1GO15355 546 aaPredicted RBP21.1■□□□□ 0.97
PCDH1-203ENST00000394536 FRAT1Q92837 279 aaPredicted RBP21.1■□□□□ 0.97
PCDH1-203ENST00000394536 MIA2Q96PC5 1412 aa21.1■□□□□ 0.97
PCDH1-203ENST00000394536 CRBNQ96SW2 442 aa21.09■□□□□ 0.97
PCDH1-203ENST00000394536 DAPK1P53355 1430 aa21.09■□□□□ 0.97
PCDH1-203ENST00000394536 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
PCDH1-203ENST00000394536 CCDC146Q8IYE0 955 aa21.09■□□□□ 0.97
PCDH1-203ENST00000394536 ANKRD50Q9ULJ7 1429 aa21.09■□□□□ 0.97
PCDH1-203ENST00000394536 CARMIL2Q6F5E8 1435 aa21.08■□□□□ 0.97
PCDH1-203ENST00000394536 SKAP1Q86WV1 359 aa21.06■□□□□ 0.96
PCDH1-203ENST00000394536 PRDM2Q13029 1718 aa21.06■□□□□ 0.96
PCDH1-203ENST00000394536 URB2Q14146 1524 aaKnown RBP21.05■□□□□ 0.96
PCDH1-203ENST00000394536 PDE3BQ13370 1112 aa21.05■□□□□ 0.96
PCDH1-203ENST00000394536 ABCC5O15440 1437 aa21.04■□□□□ 0.96
PCDH1-203ENST00000394536 SNAPC4Q5SXM2 1469 aa21.03■□□□□ 0.96
PCDH1-203ENST00000394536 CDCA8Q53HL2 280 aa21.02■□□□□ 0.96
PCDH1-203ENST00000394536 SMG6Q86US8 1419 aaKnown RBP21.01■□□□□ 0.95
PCDH1-203ENST00000394536 GRIN2BQ13224 1484 aa21.01■□□□□ 0.95
PCDH1-203ENST00000394536 UPF2Q9HAU5 1272 aaKnown RBP21.01■□□□□ 0.95
PCDH1-203ENST00000394536 CCDC144AA2RUR9 1427 aa21.01■□□□□ 0.95
PCDH1-203ENST00000394536 KIAA1107Q9UPP5 1409 aa21■□□□□ 0.95
PCDH1-203ENST00000394536 RPRD2Q5VT52 1461 aaKnown RBP20.99■□□□□ 0.95
PCDH1-203ENST00000394536 CFAP43Q8NDM7 1665 aa20.98■□□□□ 0.95
PCDH1-203ENST00000394536 GOLGA2Q08379 1002 aa20.97■□□□□ 0.95
PCDH1-203ENST00000394536 ARID4BQ4LE39 1312 aaPredicted RBP20.96■□□□□ 0.95
PCDH1-203ENST00000394536 ADAMTS8Q9UP79 889 aa20.96■□□□□ 0.95
PCDH1-203ENST00000394536 CUL7Q14999 1698 aa20.96■□□□□ 0.95
PCDH1-203ENST00000394536 BRD4O60885 1362 aaPredicted RBP20.95■□□□□ 0.94
PCDH1-203ENST00000394536 ROCK1Q13464 1354 aa20.94■□□□□ 0.94
PCDH1-203ENST00000394536 HECW1Q76N89 1606 aa20.93■□□□□ 0.94
PCDH1-203ENST00000394536 UGGT2Q9NYU1 1516 aa20.93■□□□□ 0.94
PCDH1-203ENST00000394536 THOC2Q8NI27 1593 aaKnown RBP20.92■□□□□ 0.94
PCDH1-203ENST00000394536 APAF1O14727 1248 aa20.91■□□□□ 0.94
PCDH1-203ENST00000394536 TROQ12816 1431 aaPredicted RBP20.9■□□□□ 0.94
PCDH1-203ENST00000394536 SPRYD3Q8NCJ5 442 aa20.89■□□□□ 0.93
PCDH1-203ENST00000394536 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms