RNA–Protein interactions for RNA: ENST00000393357.6

PHTF1-205, Transcript of putative homeodomain transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHTF1, Length 3,244 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-205ENST00000393357 RAD54L2Q9Y4B4 1467 aa21.8■■□□□ 1.08
PHTF1-205ENST00000393357 HFM1A2PYH4 1435 aa21.8■■□□□ 1.08
PHTF1-205ENST00000393357 FGD5Q6ZNL6 1462 aa21.78■■□□□ 1.08
PHTF1-205ENST00000393357 RCAN3Q9UKA8 241 aa21.78■■□□□ 1.08
PHTF1-205ENST00000393357 RGS3P49796 1198 aa21.76■■□□□ 1.07
PHTF1-205ENST00000393357 CC2D2AQ9P2K1 1620 aa21.76■■□□□ 1.07
PHTF1-205ENST00000393357 RRP1P56182 461 aaKnown RBP21.76■■□□□ 1.07
PHTF1-205ENST00000393357 CC2D1BQ5T0F9 858 aaKnown RBP21.74■■□□□ 1.07
PHTF1-205ENST00000393357 PNISRQ8TF01 805 aaKnown RBP21.73■■□□□ 1.07
PHTF1-205ENST00000393357 NCOA2Q15596 1464 aa21.72■■□□□ 1.07
PHTF1-205ENST00000393357 TDRD9Q8NDG6 1382 aaKnown RBP21.72■■□□□ 1.07
PHTF1-205ENST00000393357 CARD11Q9BXL7 1154 aa21.71■■□□□ 1.07
PHTF1-205ENST00000393357 FRAT1Q92837 279 aaPredicted RBP21.71■■□□□ 1.07
PHTF1-205ENST00000393357 PTPN23Q9H3S7 1636 aa21.71■■□□□ 1.07
PHTF1-205ENST00000393357 NCOA1Q15788 1441 aa21.7■■□□□ 1.06
PHTF1-205ENST00000393357 SMG6Q86US8 1419 aaKnown RBP21.7■■□□□ 1.06
PHTF1-205ENST00000393357 CRBNQ96SW2 442 aa21.69■■□□□ 1.06
PHTF1-205ENST00000393357 BACH2Q9BYV9 841 aa21.69■■□□□ 1.06
PHTF1-205ENST00000393357 NFKBIBQ15653 356 aa21.68■■□□□ 1.06
PHTF1-205ENST00000393357 MYOM3Q5VTT5 1437 aa21.67■■□□□ 1.06
PHTF1-205ENST00000393357 CASKIN1Q8WXD9 1431 aa21.67■■□□□ 1.06
PHTF1-205ENST00000393357 ST20-MTHFSA0A0A6YYL1 179 aa21.67■■□□□ 1.06
PHTF1-205ENST00000393357 TCERG1O14776 1098 aaKnown RBP21.67■■□□□ 1.06
PHTF1-205ENST00000393357 RGL3Q3MIN7 710 aa21.66■■□□□ 1.06
PHTF1-205ENST00000393357 C20orf194Q5TEA3 1177 aa21.66■■□□□ 1.06
PHTF1-205ENST00000393357 GSE1Q14687 1217 aa21.65■■□□□ 1.06
PHTF1-205ENST00000393357 KDM5BQ9UGL1 1544 aa21.65■■□□□ 1.06
PHTF1-205ENST00000393357 PPM1GO15355 546 aaPredicted RBP21.64■■□□□ 1.05
PHTF1-205ENST00000393357 USP47Q96K76 1375 aa21.64■■□□□ 1.05
PHTF1-205ENST00000393357 PKD2Q13563 968 aa21.63■■□□□ 1.05
PHTF1-205ENST00000393357 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
PHTF1-205ENST00000393357 FRAT2O75474 233 aaPredicted RBP21.62■■□□□ 1.05
PHTF1-205ENST00000393357 FYCO1Q9BQS8 1478 aa21.6■■□□□ 1.05
PHTF1-205ENST00000393357 DCAF11Q8TEB1 546 aa21.59■■□□□ 1.05
PHTF1-205ENST00000393357 KDM6BO15054 1643 aa21.59■■□□□ 1.05
PHTF1-205ENST00000393357 FANCD2Q9BXW9 1451 aa21.59■■□□□ 1.05
PHTF1-205ENST00000393357 DENND4BO75064 1496 aaPredicted RBP21.57■■□□□ 1.04
PHTF1-205ENST00000393357 SPRYD3Q8NCJ5 442 aa21.56■■□□□ 1.04
PHTF1-205ENST00000393357 SLKQ9H2G2 1235 aaPredicted RBP21.55■■□□□ 1.04
PHTF1-205ENST00000393357 DHX29Q7Z478 1369 aaKnown RBP21.54■■□□□ 1.04
PHTF1-205ENST00000393357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.51■■□□□ 1.03
PHTF1-205ENST00000393357 RNF123Q5XPI4 1314 aa21.51■■□□□ 1.03
PHTF1-205ENST00000393357 CFAP43Q8NDM7 1665 aa21.5■■□□□ 1.03
PHTF1-205ENST00000393357 DNMBPQ6XZF7 1577 aa21.5■■□□□ 1.03
PHTF1-205ENST00000393357 ANKRD30BQ9BXX2 1392 aa21.5■■□□□ 1.03
PHTF1-205ENST00000393357 USP35Q9P2H5 1018 aa21.49■■□□□ 1.03
PHTF1-205ENST00000393357 ARID4BQ4LE39 1312 aaPredicted RBP21.48■■□□□ 1.03
PHTF1-205ENST00000393357 DDRGK1Q96HY6 314 aa21.48■■□□□ 1.03
PHTF1-205ENST00000393357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.46■■□□□ 1.03
PHTF1-205ENST00000393357 MYBBP1AQ9BQG0 1328 aaKnown RBP21.45■■□□□ 1.02
PHTF1-205ENST00000393357 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
PHTF1-205ENST00000393357 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
PHTF1-205ENST00000393357 NESP48681 1621 aa21.44■■□□□ 1.02
PHTF1-205ENST00000393357 GZF1Q9H116 711 aaPredicted RBP21.44■■□□□ 1.02
PHTF1-205ENST00000393357 CFDP1Q9UEE9 299 aaPredicted RBP21.44■■□□□ 1.02
PHTF1-205ENST00000393357 POLA1P09884 1462 aaPredicted RBP21.43■■□□□ 1.02
PHTF1-205ENST00000393357 CCDC146Q8IYE0 955 aa21.42■■□□□ 1.02
PHTF1-205ENST00000393357 CDK13Q14004 1512 aaKnown RBP21.41■■□□□ 1.02
PHTF1-205ENST00000393357 WASHC2CQ9Y4E1 1318 aa21.4■■□□□ 1.02
PHTF1-205ENST00000393357 POGKQ9P215 609 aa21.4■■□□□ 1.02
PHTF1-205ENST00000393357 SNAPC4Q5SXM2 1469 aa21.4■■□□□ 1.02
PHTF1-205ENST00000393357 NBPF1Q3BBV0 1214 aa21.39■■□□□ 1.02
PHTF1-205ENST00000393357 SPATA31E1Q6ZUB1 1445 aa21.39■■□□□ 1.01
PHTF1-205ENST00000393357 MS4A1P11836 297 aa21.38■■□□□ 1.01
PHTF1-205ENST00000393357 NLRP13Q86W25 1043 aa21.38■■□□□ 1.01
PHTF1-205ENST00000393357 KIF15Q9NS87 1388 aa21.38■■□□□ 1.01
PHTF1-205ENST00000393357 MAGI3Q5TCQ9 1506 aa21.37■■□□□ 1.01
PHTF1-205ENST00000393357 RPRD2Q5VT52 1461 aaKnown RBP21.37■■□□□ 1.01
PHTF1-205ENST00000393357 FBLN2P98095 1184 aa21.36■■□□□ 1.01
PHTF1-205ENST00000393357 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
PHTF1-205ENST00000393357 ADAMTS8Q9UP79 889 aa21.35■■□□□ 1.01
PHTF1-205ENST00000393357 NEUROD2Q15784 382 aa21.35■■□□□ 1.01
PHTF1-205ENST00000393357 PANK3Q9H999 370 aa21.34■■□□□ 1.01
PHTF1-205ENST00000393357 RALBP1Q15311 655 aa21.33■■□□□ 1.01
PHTF1-205ENST00000393357 NUP155O75694 1391 aa21.32■■□□□ 1
PHTF1-205ENST00000393357 CANXP27824 592 aaKnown RBP21.32■■□□□ 1
PHTF1-205ENST00000393357 ROCK2O75116 1388 aaKnown RBP21.32■■□□□ 1
PHTF1-205ENST00000393357 KTN1Q86UP2 1357 aaKnown RBP21.32■■□□□ 1
PHTF1-205ENST00000393357 CUL7Q14999 1698 aa21.31■■□□□ 1
PHTF1-205ENST00000393357 FAM161AQ3B820 660 aa21.31■■□□□ 1
PHTF1-205ENST00000393357 TEX14Q8IWB6 1497 aa21.31■■□□□ 1
PHTF1-205ENST00000393357 WDR43Q15061 677 aaKnown RBP eCLIP21.31■■□□□ 1
PHTF1-205ENST00000393357 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
PHTF1-205ENST00000393357 NAP1L5Q96NT1 182 aaPredicted RBP21.29■■□□□ 1
PHTF1-205ENST00000393357 BCAR3O75815 825 aa21.28■■□□□ 1
PHTF1-205ENST00000393357 SUPT6HQ7KZ85 1726 aaKnown RBP21.28■■□□□ 1
PHTF1-205ENST00000393357 UBE2Q2Q8WVN8 375 aa21.28■■□□□ 1
PHTF1-205ENST00000393357 SEC24BO95487 1268 aa21.27■■□□□ 1
PHTF1-205ENST00000393357 C8orf34Q49A92 452 aa21.27■■□□□ 1
PHTF1-205ENST00000393357 EFCAB5A4FU69 1503 aa21.26■□□□□ 0.99
PHTF1-205ENST00000393357 BRD4O60885 1362 aaPredicted RBP21.26■□□□□ 0.99
PHTF1-205ENST00000393357 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
PHTF1-205ENST00000393357 BCORL1Q5H9F3 1711 aa21.25■□□□□ 0.99
PHTF1-205ENST00000393357 ABCC5O15440 1437 aa21.24■□□□□ 0.99
PHTF1-205ENST00000393357 DAPK1P53355 1430 aa21.24■□□□□ 0.99
PHTF1-205ENST00000393357 GRIN2BQ13224 1484 aa21.24■□□□□ 0.99
PHTF1-205ENST00000393357 TNNT2P45379 298 aaPredicted RBP21.23■□□□□ 0.99
PHTF1-205ENST00000393357 BCL2L13Q9BXK5 485 aa21.23■□□□□ 0.99
PHTF1-205ENST00000393357 CTTNBP2Q8WZ74 1663 aa21.23■□□□□ 0.99
PHTF1-205ENST00000393357 UGGT2Q9NYU1 1516 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms