RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 RTN4Q9NQC3 1192 aaKnown RBP11.35□□□□□ -0.59
PCDH9-202ENST00000377865 EFCAB5A4FU69 1503 aa11.35□□□□□ -0.59
PCDH9-202ENST00000377865 MYOM3Q5VTT5 1437 aa11.34□□□□□ -0.59
PCDH9-202ENST00000377865 CC2D1BQ5T0F9 858 aaKnown RBP11.34□□□□□ -0.59
PCDH9-202ENST00000377865 ARXQ96QS3 562 aa11.34□□□□□ -0.59
PCDH9-202ENST00000377865 IGF1RP08069 1367 aa11.33□□□□□ -0.6
PCDH9-202ENST00000377865 RGS3P49796 1198 aa11.33□□□□□ -0.6
PCDH9-202ENST00000377865 RGL3Q3MIN7 710 aa11.33□□□□□ -0.6
PCDH9-202ENST00000377865 DCAF11Q8TEB1 546 aa11.33□□□□□ -0.6
PCDH9-202ENST00000377865 MYBBP1AQ9BQG0 1328 aaKnown RBP11.33□□□□□ -0.6
PCDH9-202ENST00000377865 PKD2Q13563 968 aa11.32□□□□□ -0.6
PCDH9-202ENST00000377865 MAP3K1Q13233 1512 aa11.32□□□□□ -0.6
PCDH9-202ENST00000377865 CHGAP10645 457 aaKnown RBP11.32□□□□□ -0.6
PCDH9-202ENST00000377865 CCDC7Q96M83 1385 aa11.31□□□□□ -0.6
PCDH9-202ENST00000377865 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.31□□□□□ -0.6
PCDH9-202ENST00000377865 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
PCDH9-202ENST00000377865 SENP3-EIF4A1A0A087X0R7 540 aa11.31□□□□□ -0.6
PCDH9-202ENST00000377865 FOXD1Q16676 465 aa11.3□□□□□ -0.6
PCDH9-202ENST00000377865 NLRP13Q86W25 1043 aa11.3□□□□□ -0.6
PCDH9-202ENST00000377865 FTSJ3Q8IY81 847 aaKnown RBP11.3□□□□□ -0.6
PCDH9-202ENST00000377865 WDR97A6NE52 1622 aa11.3□□□□□ -0.6
PCDH9-202ENST00000377865 PDS5BQ9NTI5 1447 aa11.3□□□□□ -0.6
PCDH9-202ENST00000377865 CHMP4BQ9H444 224 aaKnown RBP11.3□□□□□ -0.6
PCDH9-202ENST00000377865 PTMSP20962 102 aa11.29□□□□□ -0.6
PCDH9-202ENST00000377865 NAP1L5Q96NT1 182 aaPredicted RBP11.29□□□□□ -0.6
PCDH9-202ENST00000377865 RRP1P56182 461 aaKnown RBP11.28□□□□□ -0.6
PCDH9-202ENST00000377865 NCAPD3P42695 1498 aa11.28□□□□□ -0.6
PCDH9-202ENST00000377865 FANCD2Q9BXW9 1451 aa11.27□□□□□ -0.6
PCDH9-202ENST00000377865 EHBP1L1Q8N3D4 1523 aa11.27□□□□□ -0.6
PCDH9-202ENST00000377865 CARMIL2Q6F5E8 1435 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 USP47Q96K76 1375 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 PDE4AP27815 886 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 NCOA2Q15596 1464 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 NUP155O75694 1391 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 HSCBQ8IWL3 235 aa11.26□□□□□ -0.61
PCDH9-202ENST00000377865 HMGXB3Q12766 1538 aa11.25□□□□□ -0.61
PCDH9-202ENST00000377865 CASC1Q6TDU7 716 aa11.25□□□□□ -0.61
PCDH9-202ENST00000377865 BIVM-ERCC5R4GMW8 1640 aa11.25□□□□□ -0.61
PCDH9-202ENST00000377865 CENPQQ7L2Z9 268 aaPredicted RBP11.25□□□□□ -0.61
PCDH9-202ENST00000377865 HFM1A2PYH4 1435 aa11.25□□□□□ -0.61
PCDH9-202ENST00000377865 NCLP19338 710 aaKnown RBP11.25□□□□□ -0.61
PCDH9-202ENST00000377865 PEG3Q9GZU2 1588 aa11.24□□□□□ -0.61
PCDH9-202ENST00000377865 EIF3AQ14152 1382 aaKnown RBP11.24□□□□□ -0.61
PCDH9-202ENST00000377865 CFAP44Q96MT7 982 aa11.24□□□□□ -0.61
PCDH9-202ENST00000377865 WASHC2AQ641Q2 1341 aa11.23□□□□□ -0.61
PCDH9-202ENST00000377865 CFTRP13569 1480 aa11.23□□□□□ -0.61
PCDH9-202ENST00000377865 PMFBP1Q8TBY8 1022 aa11.23□□□□□ -0.61
PCDH9-202ENST00000377865 FRAT1Q92837 279 aaPredicted RBP11.23□□□□□ -0.61
PCDH9-202ENST00000377865 HSP90AB1P08238 724 aaKnown RBP11.23□□□□□ -0.61
PCDH9-202ENST00000377865 PNNQ9H307 717 aaKnown RBP11.23□□□□□ -0.61
PCDH9-202ENST00000377865 SUPT6HQ7KZ85 1726 aaKnown RBP11.22□□□□□ -0.61
PCDH9-202ENST00000377865 TDRD9Q8NDG6 1382 aaKnown RBP11.22□□□□□ -0.61
PCDH9-202ENST00000377865 MIA2Q96PC5 1412 aa11.22□□□□□ -0.61
PCDH9-202ENST00000377865 KANK1Q14678 1352 aa11.22□□□□□ -0.61
PCDH9-202ENST00000377865 MAPK8IP3Q9UPT6 1336 aa11.22□□□□□ -0.61
PCDH9-202ENST00000377865 KIF7Q2M1P5 1343 aa11.21□□□□□ -0.61
PCDH9-202ENST00000377865 GOLGA2Q08379 1002 aa11.21□□□□□ -0.61
PCDH9-202ENST00000377865 GSE1Q14687 1217 aa11.21□□□□□ -0.61
PCDH9-202ENST00000377865 FAM161AQ3B820 660 aa11.21□□□□□ -0.61
PCDH9-202ENST00000377865 SMG6Q86US8 1419 aaKnown RBP11.21□□□□□ -0.61
PCDH9-202ENST00000377865 AQRO60306 1485 aaKnown RBP eCLIP11.2□□□□□ -0.62
PCDH9-202ENST00000377865 RSPH6AQ9H0K4 717 aa11.2□□□□□ -0.62
PCDH9-202ENST00000377865 BRD4O60885 1362 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-202ENST00000377865 RWDD1Q9H446 243 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-202ENST00000377865 EXOC6Q8TAG9 804 aa11.19□□□□□ -0.62
PCDH9-202ENST00000377865 STAG3Q9UJ98 1225 aa11.19□□□□□ -0.62
PCDH9-202ENST00000377865 PCF11O94913 1555 aaKnown RBP11.19□□□□□ -0.62
PCDH9-202ENST00000377865 RSPH4AQ5TD94 716 aa11.19□□□□□ -0.62
PCDH9-202ENST00000377865 GBP4Q96PP9 640 aa11.18□□□□□ -0.62
PCDH9-202ENST00000377865 HECW1Q76N89 1606 aa11.17□□□□□ -0.62
PCDH9-202ENST00000377865 GOLGA6L3A6NEY3 463 aa11.17□□□□□ -0.62
PCDH9-202ENST00000377865 GAPVD1Q14C86 1478 aa11.17□□□□□ -0.62
PCDH9-202ENST00000377865 TNNT2P45379 298 aaPredicted RBP11.16□□□□□ -0.62
PCDH9-202ENST00000377865 NPM1P06748 294 aaKnown RBP eCLIP11.16□□□□□ -0.62
PCDH9-202ENST00000377865 NEUROD2Q15784 382 aa11.16□□□□□ -0.62
PCDH9-202ENST00000377865 PTMAP06454 111 aaKnown RBP11.16□□□□□ -0.62
PCDH9-202ENST00000377865 CCDC144AA2RUR9 1427 aa11.16□□□□□ -0.62
PCDH9-202ENST00000377865 MORC1Q86VD1 984 aa11.15□□□□□ -0.62
PCDH9-202ENST00000377865 CRBNQ96SW2 442 aa11.15□□□□□ -0.63
PCDH9-202ENST00000377865 MSNP26038 577 aaKnown RBP11.14□□□□□ -0.63
PCDH9-202ENST00000377865 ST20-MTHFSA0A0A6YYL1 179 aa11.14□□□□□ -0.63
PCDH9-202ENST00000377865 CUL7Q14999 1698 aa11.14□□□□□ -0.63
PCDH9-202ENST00000377865 NGEFQ8N5V2 710 aa11.14□□□□□ -0.63
PCDH9-202ENST00000377865 CENPJQ9HC77 1338 aaPredicted RBP11.14□□□□□ -0.63
PCDH9-202ENST00000377865 MAPKBP1O60336 1514 aa11.13□□□□□ -0.63
PCDH9-202ENST00000377865 RAD54L2Q9Y4B4 1467 aa11.13□□□□□ -0.63
PCDH9-202ENST00000377865 IPO8O15397 1037 aaKnown RBP11.13□□□□□ -0.63
PCDH9-202ENST00000377865 ERCC6Q03468 1493 aa11.13□□□□□ -0.63
PCDH9-202ENST00000377865 DDX11L8A8MPP1 907 aa11.11□□□□□ -0.63
PCDH9-202ENST00000377865 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-202ENST00000377865 CGNL1Q0VF96 1302 aa11.11□□□□□ -0.63
PCDH9-202ENST00000377865 E9PSI1 815 aa11.11□□□□□ -0.63
PCDH9-202ENST00000377865 SLKQ9H2G2 1235 aaPredicted RBP11.11□□□□□ -0.63
PCDH9-202ENST00000377865 PTPN23Q9H3S7 1636 aa11.1□□□□□ -0.63
PCDH9-202ENST00000377865 NAIPQ13075 1403 aa11.1□□□□□ -0.63
PCDH9-202ENST00000377865 PANK3Q9H999 370 aa11.1□□□□□ -0.63
PCDH9-202ENST00000377865 PRDM2Q13029 1718 aa11.09□□□□□ -0.63
PCDH9-202ENST00000377865 AAMPQ13685 434 aa11.09□□□□□ -0.63
PCDH9-202ENST00000377865 DNTTIP2Q5QJE6 756 aaKnown RBP11.09□□□□□ -0.63
PCDH9-202ENST00000377865 CC2D2AQ9P2K1 1620 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms