RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 NISCHQ9Y2I1 1504 aa15.6■□□□□ 0.09
PCDH9-202ENST00000377865 DCAF8L2P0C7V8 631 aa14.4□□□□□ -0.1
PCDH9-202ENST00000377865 SUPT5HO00267 1087 aaKnown RBP14.4□□□□□ -0.1
PCDH9-202ENST00000377865 SHROOM4Q9ULL8 1493 aa14.27□□□□□ -0.13
PCDH9-202ENST00000377865 PCGF6Q9BYE7 350 aa13.85□□□□□ -0.19
PCDH9-202ENST00000377865 ZEB1P37275 1124 aaPredicted RBP13.83□□□□□ -0.2
PCDH9-202ENST00000377865 PELP1Q8IZL8 1130 aaKnown RBP13.81□□□□□ -0.2
PCDH9-202ENST00000377865 HRCP23327 699 aa13.71□□□□□ -0.21
PCDH9-202ENST00000377865 MYT1Q01538 1121 aa13.55□□□□□ -0.24
PCDH9-202ENST00000377865 CENPBP07199 599 aaPredicted RBP13.54□□□□□ -0.24
PCDH9-202ENST00000377865 TRIM26Q12899 539 aaPredicted RBP13.52□□□□□ -0.25
PCDH9-202ENST00000377865 EHMT2Q96KQ7 1210 aa13.47□□□□□ -0.25
PCDH9-202ENST00000377865 CHIC1Q5VXU3 224 aa13.46□□□□□ -0.25
PCDH9-202ENST00000377865 TRIM41Q8WV44 630 aa13.46□□□□□ -0.25
PCDH9-202ENST00000377865 FAM9AQ8IZU1 332 aaPredicted RBP13.42□□□□□ -0.26
PCDH9-202ENST00000377865 APLP2Q06481 763 aa13.38□□□□□ -0.27
PCDH9-202ENST00000377865 CCER1Q8TC90 406 aaPredicted RBP13.36□□□□□ -0.27
PCDH9-202ENST00000377865 PPARGC1BQ86YN6 1023 aaKnown RBP13.2□□□□□ -0.3
PCDH9-202ENST00000377865 LOC105371045A0A1W2PR82 267 aa13.18□□□□□ -0.3
PCDH9-202ENST00000377865 DCAF1Q9Y4B6 1507 aa13.14□□□□□ -0.31
PCDH9-202ENST00000377865 TTBK1Q5TCY1 1321 aaPredicted RBP13.13□□□□□ -0.31
PCDH9-202ENST00000377865 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
PCDH9-202ENST00000377865 CCDC180Q9P1Z9 1646 aa13.06□□□□□ -0.32
PCDH9-202ENST00000377865 UBTFP17480 764 aaKnown RBP13.05□□□□□ -0.32
PCDH9-202ENST00000377865 YTHDC1Q96MU7 727 aaKnown RBP13□□□□□ -0.33
PCDH9-202ENST00000377865 ERICH6Q7L0X2 663 aa12.95□□□□□ -0.34
PCDH9-202ENST00000377865 DIEXFQ68CQ4 756 aaKnown RBP12.93□□□□□ -0.34
PCDH9-202ENST00000377865 NEFLP07196 543 aa12.92□□□□□ -0.34
PCDH9-202ENST00000377865 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.85□□□□□ -0.35
PCDH9-202ENST00000377865 MYO15BQ96JP2 1530 aa12.84□□□□□ -0.35
PCDH9-202ENST00000377865 RANGAP1P46060 587 aaPredicted RBP12.81□□□□□ -0.36
PCDH9-202ENST00000377865 ACIN1Q9UKV3 1341 aaKnown RBP12.8□□□□□ -0.36
PCDH9-202ENST00000377865 GTF3C3Q9Y5Q9 886 aa12.77□□□□□ -0.36
PCDH9-202ENST00000377865 ZNF316A6NFI3 1004 aaPredicted RBP12.71□□□□□ -0.37
PCDH9-202ENST00000377865 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
PCDH9-202ENST00000377865 CLSPNQ9HAW4 1339 aa12.66□□□□□ -0.38
PCDH9-202ENST00000377865 SCRIBQ14160 1630 aa12.64□□□□□ -0.39
PCDH9-202ENST00000377865 ATP1B4Q9UN42 357 aaPredicted RBP12.62□□□□□ -0.39
PCDH9-202ENST00000377865 SCAF1Q9H7N4 1312 aaKnown RBP12.59□□□□□ -0.39
PCDH9-202ENST00000377865 ITGAEP38570 1179 aa12.5□□□□□ -0.41
PCDH9-202ENST00000377865 CSRNP3Q8WYN3 585 aa12.5□□□□□ -0.41
PCDH9-202ENST00000377865 NEUROD1Q13562 356 aa12.49□□□□□ -0.41
PCDH9-202ENST00000377865 ABCC9O60706 1549 aa12.48□□□□□ -0.41
PCDH9-202ENST00000377865 RB1CC1Q8TDY2 1594 aa12.47□□□□□ -0.41
PCDH9-202ENST00000377865 RSF1Q96T23 1441 aaPredicted RBP12.47□□□□□ -0.41
PCDH9-202ENST00000377865 EEA1Q15075 1411 aa12.42□□□□□ -0.42
PCDH9-202ENST00000377865 ANP32CO43423 234 aa12.38□□□□□ -0.43
PCDH9-202ENST00000377865 CDK11AQ9UQ88 783 aaPredicted RBP12.34□□□□□ -0.43
PCDH9-202ENST00000377865 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
PCDH9-202ENST00000377865 FAM50AQ14320 339 aaKnown RBP12.33□□□□□ -0.44
PCDH9-202ENST00000377865 GOLGA3Q08378 1498 aa12.33□□□□□ -0.44
PCDH9-202ENST00000377865 RTL5Q5HYW3 569 aaPredicted RBP12.31□□□□□ -0.44
PCDH9-202ENST00000377865 NACADO15069 1562 aa12.31□□□□□ -0.44
PCDH9-202ENST00000377865 BCANQ96GW7 911 aa12.31□□□□□ -0.44
PCDH9-202ENST00000377865 DAXXQ9UER7 740 aaPredicted RBP12.3□□□□□ -0.44
PCDH9-202ENST00000377865 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
PCDH9-202ENST00000377865 MIER1Q8N108 512 aa12.25□□□□□ -0.45
PCDH9-202ENST00000377865 CLIP1P30622 1438 aa12.25□□□□□ -0.45
PCDH9-202ENST00000377865 MYT1LQ9UL68 1186 aa12.23□□□□□ -0.45
PCDH9-202ENST00000377865 BAZ1AQ9NRL2 1556 aaPredicted RBP12.2□□□□□ -0.46
PCDH9-202ENST00000377865 CEP164Q9UPV0 1460 aa12.2□□□□□ -0.46
PCDH9-202ENST00000377865 PABPN1Q86U42 306 aaKnown RBP eCLIP12.2□□□□□ -0.46
PCDH9-202ENST00000377865 FKBP8Q14318 412 aa12.19□□□□□ -0.46
PCDH9-202ENST00000377865 POLR3GLQ9BT43 218 aa12.18□□□□□ -0.46
PCDH9-202ENST00000377865 TRIM52Q96A61 297 aa12.15□□□□□ -0.46
PCDH9-202ENST00000377865 WRNQ14191 1432 aaPredicted RBP eCLIP12.13□□□□□ -0.47
PCDH9-202ENST00000377865 TONSLQ96HA7 1378 aa12.12□□□□□ -0.47
PCDH9-202ENST00000377865 ANP32AP39687 249 aaKnown RBP12.09□□□□□ -0.47
PCDH9-202ENST00000377865 ANP32EQ9BTT0 268 aa12.09□□□□□ -0.47
PCDH9-202ENST00000377865 DDX10Q13206 875 aaKnown RBP12.07□□□□□ -0.48
PCDH9-202ENST00000377865 CECR2Q9BXF3 1484 aa12.06□□□□□ -0.48
PCDH9-202ENST00000377865 MROH2BQ7Z745 1585 aa12.05□□□□□ -0.48
PCDH9-202ENST00000377865 HNRNPUQ00839 825 aaKnown RBP eCLIP12.02□□□□□ -0.49
PCDH9-202ENST00000377865 SUPT16HQ9Y5B9 1047 aaKnown RBP12.02□□□□□ -0.49
PCDH9-202ENST00000377865 TOP2AP11388 1531 aaKnown RBP12.01□□□□□ -0.49
PCDH9-202ENST00000377865 CNGB1Q14028 1251 aaPredicted RBP12.01□□□□□ -0.49
PCDH9-202ENST00000377865 VPS8Q8N3P4 1428 aa12.01□□□□□ -0.49
PCDH9-202ENST00000377865 SOGA1O94964 1423 aa11.99□□□□□ -0.49
PCDH9-202ENST00000377865 WIZO95785 1651 aa11.98□□□□□ -0.49
PCDH9-202ENST00000377865 ABCC8Q09428 1581 aa11.97□□□□□ -0.49
PCDH9-202ENST00000377865 CCDC88BA6NC98 1476 aa11.96□□□□□ -0.49
PCDH9-202ENST00000377865 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.5
PCDH9-202ENST00000377865 P3H3Q8IVL6 736 aa11.95□□□□□ -0.5
PCDH9-202ENST00000377865 KIF27Q86VH2 1401 aa11.95□□□□□ -0.5
PCDH9-202ENST00000377865 TIMELESSQ9UNS1 1208 aa11.92□□□□□ -0.5
PCDH9-202ENST00000377865 CCNB3Q8WWL7 1395 aa11.91□□□□□ -0.5
PCDH9-202ENST00000377865 ZNF326Q5BKZ1 582 aaKnown RBP11.9□□□□□ -0.5
PCDH9-202ENST00000377865 CCER2I3L3R5 266 aa11.89□□□□□ -0.51
PCDH9-202ENST00000377865 FAM9BQ8IZU0 186 aa11.87□□□□□ -0.51
PCDH9-202ENST00000377865 MTUS2Q5JR59 1369 aa11.87□□□□□ -0.51
PCDH9-202ENST00000377865 ZBTB47Q9UFB7 747 aaPredicted RBP11.87□□□□□ -0.51
PCDH9-202ENST00000377865 CCDC136Q96JN2 1154 aa11.86□□□□□ -0.51
PCDH9-202ENST00000377865 EIF4G2P78344 907 aaKnown RBP eCLIP11.85□□□□□ -0.519e-10■■■■■ 41.2
PCDH9-202ENST00000377865 MRS2Q9HD23 443 aa11.85□□□□□ -0.51
PCDH9-202ENST00000377865 FHAD1B1AJZ9 1412 aa11.84□□□□□ -0.51
PCDH9-202ENST00000377865 SETD5Q9C0A6 1442 aa11.83□□□□□ -0.52
PCDH9-202ENST00000377865 NPM2Q86SE8 214 aaKnown RBP11.83□□□□□ -0.52
PCDH9-202ENST00000377865 SMARCA4P51532 1647 aa11.82□□□□□ -0.52
PCDH9-202ENST00000377865 PPP4R2Q9NY27 417 aa11.82□□□□□ -0.52
PCDH9-202ENST00000377865 SMARCA2P51531 1590 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms