RNA–Protein interactions for RNA: ENST00000374541.3

PTPN3-202, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPN3, Length 6,703 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-202ENST00000374541 TRIM44Q96DX7 344 aaPredicted RBP8.26□□□□□ -1.09
PTPN3-202ENST00000374541 CCDC136Q96JN2 1154 aa8.26□□□□□ -1.09
PTPN3-202ENST00000374541 NCLP19338 710 aaKnown RBP8.26□□□□□ -1.09
PTPN3-202ENST00000374541 ANKLE2Q86XL3 938 aa8.26□□□□□ -1.09
PTPN3-202ENST00000374541 TONSLQ96HA7 1378 aa8.25□□□□□ -1.09
PTPN3-202ENST00000374541 DISP3Q9P2K9 1392 aa8.25□□□□□ -1.09
PTPN3-202ENST00000374541 THEMISQ8N1K5 641 aaPredicted RBP8.24□□□□□ -1.09
PTPN3-202ENST00000374541 IFT140Q96RY7 1462 aa8.24□□□□□ -1.09
PTPN3-202ENST00000374541 CFAP44Q96MT7 982 aa8.24□□□□□ -1.09
PTPN3-202ENST00000374541 SYTL4Q96C24 671 aaPredicted RBP8.24□□□□□ -1.09
PTPN3-202ENST00000374541 HNRNPUQ00839 825 aaKnown RBP eCLIP8.23□□□□□ -1.09
PTPN3-202ENST00000374541 ERICH6BQ5W0A0 696 aa8.23□□□□□ -1.09
PTPN3-202ENST00000374541 MYH16Q9H6N6 1097 aa8.23□□□□□ -1.09
PTPN3-202ENST00000374541 HMGXB3Q12766 1538 aa8.23□□□□□ -1.09
PTPN3-202ENST00000374541 PRG4Q92954 1404 aaPredicted RBP8.23□□□□□ -1.09
PTPN3-202ENST00000374541 HNRNPMP52272 730 aaKnown RBP eCLIP8.23□□□□□ -1.09
PTPN3-202ENST00000374541 NCAPD3P42695 1498 aa8.22□□□□□ -1.09
PTPN3-202ENST00000374541 PSME1Q06323 249 aa8.22□□□□□ -1.09
PTPN3-202ENST00000374541 GAPVD1Q14C86 1478 aa8.22□□□□□ -1.09
PTPN3-202ENST00000374541 GTF2E1P29083 439 aaPredicted RBP8.22□□□□□ -1.09
PTPN3-202ENST00000374541 GOLGA2Q08379 1002 aa8.21□□□□□ -1.09
PTPN3-202ENST00000374541 GOLGA3Q08378 1498 aa8.21□□□□□ -1.1
PTPN3-202ENST00000374541 NGLY1Q96IV0 654 aa8.21□□□□□ -1.1
PTPN3-202ENST00000374541 TXNDC2Q86VQ3 553 aa8.19□□□□□ -1.1
PTPN3-202ENST00000374541 SYNJ1O43426 1573 aa8.19□□□□□ -1.1
PTPN3-202ENST00000374541 PPP6R1Q9UPN7 881 aa8.19□□□□□ -1.1
PTPN3-202ENST00000374541 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.19□□□□□ -1.1
PTPN3-202ENST00000374541 GRIN2BQ13224 1484 aa8.19□□□□□ -1.1
PTPN3-202ENST00000374541 WDR43Q15061 677 aaKnown RBP eCLIP8.18□□□□□ -1.1
PTPN3-202ENST00000374541 PDE3BQ13370 1112 aa8.18□□□□□ -1.1
PTPN3-202ENST00000374541 NBR1Q14596 966 aa8.18□□□□□ -1.1
PTPN3-202ENST00000374541 TNIKQ9UKE5 1360 aa8.18□□□□□ -1.1
PTPN3-202ENST00000374541 PRDM2Q13029 1718 aa8.18□□□□□ -1.1
PTPN3-202ENST00000374541 USP35Q9P2H5 1018 aa8.17□□□□□ -1.1
PTPN3-202ENST00000374541 ZRSR1Q15695 479 aaKnown RBP8.17□□□□□ -1.1
PTPN3-202ENST00000374541 C16orf71Q8IYS4 520 aaPredicted RBP8.17□□□□□ -1.1
PTPN3-202ENST00000374541 ADAMTS2O95450 1211 aa8.17□□□□□ -1.1
PTPN3-202ENST00000374541 PAXIP1Q6ZW49 1069 aaPredicted RBP8.17□□□□□ -1.1
PTPN3-202ENST00000374541 HSPA2P54652 639 aa8.16□□□□□ -1.1
PTPN3-202ENST00000374541 RAPGEF3O95398 923 aa8.16□□□□□ -1.1
PTPN3-202ENST00000374541 LMTK3Q96Q04 1460 aa8.15□□□□□ -1.1
PTPN3-202ENST00000374541 RAD54L2Q9Y4B4 1467 aa8.15□□□□□ -1.1
PTPN3-202ENST00000374541 GOLGA6L6A8MZA4 724 aa8.15□□□□□ -1.1
PTPN3-202ENST00000374541 PTMAP06454 111 aaKnown RBP8.15□□□□□ -1.11
PTPN3-202ENST00000374541 HDGFL2Q7Z4V5 671 aaPredicted RBP8.14□□□□□ -1.11
PTPN3-202ENST00000374541 RSPH4AQ5TD94 716 aa8.14□□□□□ -1.11
PTPN3-202ENST00000374541 FAM9BQ8IZU0 186 aa8.14□□□□□ -1.11
PTPN3-202ENST00000374541 NRDCO43847 1150 aa8.14□□□□□ -1.11
PTPN3-202ENST00000374541 LTV1Q96GA3 475 aaPredicted RBP8.14□□□□□ -1.11
PTPN3-202ENST00000374541 STRN4Q9NRL3 753 aa8.14□□□□□ -1.11
PTPN3-202ENST00000374541 SNAPC4Q5SXM2 1469 aa8.14□□□□□ -1.11
PTPN3-202ENST00000374541 CDCA8Q53HL2 280 aa8.13□□□□□ -1.11
PTPN3-202ENST00000374541 RUSC2Q8N2Y8 1516 aa8.13□□□□□ -1.11
PTPN3-202ENST00000374541 CASC1Q6TDU7 716 aa8.13□□□□□ -1.11
PTPN3-202ENST00000374541 ESCO1Q5FWF5 840 aa8.12□□□□□ -1.11
PTPN3-202ENST00000374541 CFAP53Q96M91 514 aa8.12□□□□□ -1.11
PTPN3-202ENST00000374541 FHAD1B1AJZ9 1412 aa8.12□□□□□ -1.11
PTPN3-202ENST00000374541 BIVM-ERCC5R4GMW8 1640 aa8.12□□□□□ -1.11
PTPN3-202ENST00000374541 MRS2Q9HD23 443 aa8.12□□□□□ -1.11
PTPN3-202ENST00000374541 ISY1Q9ULR0 285 aaKnown RBP8.12□□□□□ -1.11
PTPN3-202ENST00000374541 WASHC2AQ641Q2 1341 aa8.11□□□□□ -1.11
PTPN3-202ENST00000374541 AMPHP49418 695 aa8.11□□□□□ -1.11
PTPN3-202ENST00000374541 CWC22Q9HCG8 908 aaKnown RBP8.11□□□□□ -1.11
PTPN3-202ENST00000374541 NBPF8Q3BBV2 869 aa8.1□□□□□ -1.11
PTPN3-202ENST00000374541 DNTTIP2Q5QJE6 756 aaKnown RBP8.1□□□□□ -1.11
PTPN3-202ENST00000374541 NBPF14Q5TI25 921 aa8.1□□□□□ -1.11
PTPN3-202ENST00000374541 CHMP4BQ9H444 224 aaKnown RBP8.1□□□□□ -1.11
PTPN3-202ENST00000374541 FGD5Q6ZNL6 1462 aa8.1□□□□□ -1.11
PTPN3-202ENST00000374541 HMGB2P26583 209 aaKnown RBP8.09□□□□□ -1.11
PTPN3-202ENST00000374541 DDX10Q13206 875 aaKnown RBP8.09□□□□□ -1.11
PTPN3-202ENST00000374541 CEBPAP49715 358 aaPredicted RBP8.09□□□□□ -1.11
PTPN3-202ENST00000374541 L1TD1Q5T7N2 865 aaKnown RBP8.09□□□□□ -1.11
PTPN3-202ENST00000374541 CFTRP13569 1480 aa8.08□□□□□ -1.12
PTPN3-202ENST00000374541 CD109Q6YHK3 1445 aa8.08□□□□□ -1.12
PTPN3-202ENST00000374541 LAMC3Q9Y6N6 1575 aa8.08□□□□□ -1.12
PTPN3-202ENST00000374541 CHAF1AQ13111 956 aaPredicted RBP8.07□□□□□ -1.12
PTPN3-202ENST00000374541 RTF1Q92541 710 aaKnown RBP8.07□□□□□ -1.12
PTPN3-202ENST00000374541 C8orf37Q96NL8 207 aa8.07□□□□□ -1.12
PTPN3-202ENST00000374541 NAP1L5Q96NT1 182 aaPredicted RBP8.07□□□□□ -1.12
PTPN3-202ENST00000374541 BCL11BQ9C0K0 894 aaPredicted RBP8.07□□□□□ -1.12
PTPN3-202ENST00000374541 TEX14Q8IWB6 1497 aa8.07□□□□□ -1.12
PTPN3-202ENST00000374541 FMN1Q68DA7 1419 aa8.07□□□□□ -1.12
PTPN3-202ENST00000374541 TULP1O00294 542 aaPredicted RBP8.07□□□□□ -1.12
PTPN3-202ENST00000374541 EEA1Q15075 1411 aa8.06□□□□□ -1.12
PTPN3-202ENST00000374541 NUDCQ9Y266 331 aa8.06□□□□□ -1.12
PTPN3-202ENST00000374541 LAS1LQ9Y4W2 734 aaKnown RBP8.06□□□□□ -1.12
PTPN3-202ENST00000374541 VGFO15240 615 aaPredicted RBP8.06□□□□□ -1.12
PTPN3-202ENST00000374541 CUX1P39880 1505 aa8.06□□□□□ -1.12
PTPN3-202ENST00000374541 GPRASP1Q5JY77 1395 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 TOP2BQ02880 1626 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 ZRANB1Q9UGI0 708 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 ANKRD30AQ9BXX3 1397 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 SYNJ2O15056 1496 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 MS4A1P11836 297 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 WDR97A6NE52 1622 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 CCDC18Q5T9S5 1454 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 RAPGEF2Q9Y4G8 1499 aa8.05□□□□□ -1.12
PTPN3-202ENST00000374541 MAPK8IP3Q9UPT6 1336 aa8.04□□□□□ -1.12
PTPN3-202ENST00000374541 U2SURPO15042 1029 aaKnown RBP8.04□□□□□ -1.12
PTPN3-202ENST00000374541 AKNAQ7Z591 1439 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms