RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 EIF4G1Q04637 1599 aaKnown RBP6.14□□□□□ -1.43
CSMD3-203ENST00000343508 HSCBQ8IWL3 235 aa6.14□□□□□ -1.43
CSMD3-203ENST00000343508 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 CC2D1BQ5T0F9 858 aaKnown RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 HSP90AB1P08238 724 aaKnown RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 TIAM1Q13009 1591 aa6.13□□□□□ -1.43
CSMD3-203ENST00000343508 CENPQQ7L2Z9 268 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 DCAF11Q8TEB1 546 aa6.13□□□□□ -1.43
CSMD3-203ENST00000343508 PNNQ9H307 717 aaKnown RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 SUPT6HQ7KZ85 1726 aaKnown RBP6.13□□□□□ -1.43
CSMD3-203ENST00000343508 PDE4AP27815 886 aa6.13□□□□□ -1.43
CSMD3-203ENST00000343508 CNTLNQ9NXG0 1405 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 MYBBP1AQ9BQG0 1328 aaKnown RBP6.12□□□□□ -1.43
CSMD3-203ENST00000343508 PMFBP1Q8TBY8 1022 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 GOLGA6L3A6NEY3 463 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 PLEKHD1A6NEE1 506 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 WDR97A6NE52 1622 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 FAM161AQ3B820 660 aa6.12□□□□□ -1.43
CSMD3-203ENST00000343508 ATAD2BQ9ULI0 1458 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 L3MBTL2Q969R5 705 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 PTMAP06454 111 aaKnown RBP6.11□□□□□ -1.43
CSMD3-203ENST00000343508 RRP1P56182 461 aaKnown RBP6.11□□□□□ -1.43
CSMD3-203ENST00000343508 RGL3Q3MIN7 710 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 NLRP13Q86W25 1043 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 FYCO1Q9BQS8 1478 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 GBP4Q96PP9 640 aa6.11□□□□□ -1.43
CSMD3-203ENST00000343508 FRAT1Q92837 279 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-203ENST00000343508 HSP90AA2PQ14568 343 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-203ENST00000343508 SENP3-EIF4A1A0A087X0R7 540 aa6.1□□□□□ -1.43
CSMD3-203ENST00000343508 GOLGA2Q08379 1002 aa6.09□□□□□ -1.43
CSMD3-203ENST00000343508 CHMP7Q8WUX9 453 aaPredicted RBP6.09□□□□□ -1.43
CSMD3-203ENST00000343508 CHAF1AQ13111 956 aaPredicted RBP6.09□□□□□ -1.43
CSMD3-203ENST00000343508 FGD6Q6ZV73 1430 aa6.09□□□□□ -1.43
CSMD3-203ENST00000343508 ARAP1Q96P48 1450 aa6.09□□□□□ -1.43
CSMD3-203ENST00000343508 EFCAB5A4FU69 1503 aa6.09□□□□□ -1.44
CSMD3-203ENST00000343508 MAPK8IP3Q9UPT6 1336 aa6.08□□□□□ -1.44
CSMD3-203ENST00000343508 FHOD3Q2V2M9 1422 aa6.08□□□□□ -1.44
CSMD3-203ENST00000343508 RWDD1Q9H446 243 aaPredicted RBP6.08□□□□□ -1.44
CSMD3-203ENST00000343508 CHGAP10645 457 aaKnown RBP6.08□□□□□ -1.44
CSMD3-203ENST00000343508 DDX11L8A8MPP1 907 aa6.08□□□□□ -1.44
CSMD3-203ENST00000343508 ANKRD30AQ9BXX3 1397 aa6.08□□□□□ -1.44
CSMD3-203ENST00000343508 MAP3K1Q13233 1512 aa6.08□□□□□ -1.44
CSMD3-203ENST00000343508 CCDC7Q96M83 1385 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 BIVM-ERCC5R4GMW8 1640 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 EIF3AQ14152 1382 aaKnown RBP6.07□□□□□ -1.44
CSMD3-203ENST00000343508 PRDM2Q13029 1718 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 USP47Q96K76 1375 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 GZF1Q9H116 711 aaPredicted RBP6.07□□□□□ -1.44
CSMD3-203ENST00000343508 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.07□□□□□ -1.44
CSMD3-203ENST00000343508 MYOM3Q5VTT5 1437 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 FOXD1Q16676 465 aa6.07□□□□□ -1.44
CSMD3-203ENST00000343508 SKOR2Q2VWA4 1001 aaPredicted RBP6.07□□□□□ -1.44
CSMD3-203ENST00000343508 PKD2Q13563 968 aa6.06□□□□□ -1.44
CSMD3-203ENST00000343508 WASHC2AQ641Q2 1341 aa6.06□□□□□ -1.44
CSMD3-203ENST00000343508 UNC13AQ9UPW8 1703 aa6.06□□□□□ -1.44
CSMD3-203ENST00000343508 PRXQ9BXM0 1461 aa6.06□□□□□ -1.44
CSMD3-203ENST00000343508 SLKQ9H2G2 1235 aaPredicted RBP6.06□□□□□ -1.44
CSMD3-203ENST00000343508 NEUROD2Q15784 382 aa6.06□□□□□ -1.44
CSMD3-203ENST00000343508 SYAP1Q96A49 352 aaPredicted RBP6.05□□□□□ -1.44
CSMD3-203ENST00000343508 EHBP1L1Q8N3D4 1523 aa6.05□□□□□ -1.44
CSMD3-203ENST00000343508 CDK11BP21127 795 aaKnown RBP6.05□□□□□ -1.44
CSMD3-203ENST00000343508 CASKIN1Q8WXD9 1431 aa6.05□□□□□ -1.44
CSMD3-203ENST00000343508 NUP155O75694 1391 aa6.05□□□□□ -1.44
CSMD3-203ENST00000343508 SMG6Q86US8 1419 aaKnown RBP6.05□□□□□ -1.44
CSMD3-203ENST00000343508 GOLGA6L6A8MZA4 724 aa6.05□□□□□ -1.44
CSMD3-203ENST00000343508 NFKBIBQ15653 356 aa6.05□□□□□ -1.44
CSMD3-203ENST00000343508 IPO8O15397 1037 aaKnown RBP6.05□□□□□ -1.44
CSMD3-203ENST00000343508 NGEFQ8N5V2 710 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 SPRYD3Q8NCJ5 442 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 MIA2Q96PC5 1412 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 BRD4O60885 1362 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-203ENST00000343508 HAP1P54257 671 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-203ENST00000343508 ZRSR1Q15695 479 aaKnown RBP6.04□□□□□ -1.44
CSMD3-203ENST00000343508 MCCP23508 829 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 HFM1A2PYH4 1435 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 EXOC6Q8TAG9 804 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 CUL7Q14999 1698 aa6.04□□□□□ -1.44
CSMD3-203ENST00000343508 STAG3Q9UJ98 1225 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 AAMPQ13685 434 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 NCOA2Q15596 1464 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 KANK1Q14678 1352 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 CENPJQ9HC77 1338 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-203ENST00000343508 CGNL1Q0VF96 1302 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 E9PSI1 815 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 KIAA2012Q0VF49 1180 aa6.03□□□□□ -1.44
CSMD3-203ENST00000343508 CCDC144AA2RUR9 1427 aa6.02□□□□□ -1.44
CSMD3-203ENST00000343508 AKNAQ7Z591 1439 aa6.02□□□□□ -1.44
CSMD3-203ENST00000343508 PHF14O94880 888 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 HECW1Q76N89 1606 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 FAM43AQ8N2R8 423 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 CARMIL2Q6F5E8 1435 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 MSH5O43196 834 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 FGD5Q6ZNL6 1462 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 PCF11O94913 1555 aaKnown RBP6.02□□□□□ -1.45
CSMD3-203ENST00000343508 RSPH4AQ5TD94 716 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 CTTNBP2Q8WZ74 1663 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 CALD1Q05682 793 aaKnown RBP6.02□□□□□ -1.45
CSMD3-203ENST00000343508 CRBNQ96SW2 442 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 PLCB2Q00722 1185 aa6.02□□□□□ -1.45
CSMD3-203ENST00000343508 CADPSQ9ULU8 1353 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms