RNA–Protein interactions for RNA: ENST00000338862.5

PCDH8-201, Transcript of protocadherin 8, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH8, Length 3,708 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH8-201ENST00000338862 RGS3P49796 1198 aa18.81■□□□□ 0.6
PCDH8-201ENST00000338862 NCOA2Q15596 1464 aa18.81■□□□□ 0.6
PCDH8-201ENST00000338862 ST20-MTHFSA0A0A6YYL1 179 aa18.81■□□□□ 0.6
PCDH8-201ENST00000338862 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
PCDH8-201ENST00000338862 NCAPD3P42695 1498 aa18.8■□□□□ 0.6
PCDH8-201ENST00000338862 RCAN3Q9UKA8 241 aa18.78■□□□□ 0.6
PCDH8-201ENST00000338862 MYOM3Q5VTT5 1437 aa18.78■□□□□ 0.6
PCDH8-201ENST00000338862 FANCD2Q9BXW9 1451 aa18.78■□□□□ 0.6
PCDH8-201ENST00000338862 IL27Q8NEV9 243 aa18.78■□□□□ 0.6
PCDH8-201ENST00000338862 CASKIN1Q8WXD9 1431 aa18.78■□□□□ 0.6
PCDH8-201ENST00000338862 SENP3Q9H4L4 574 aaPredicted RBP18.77■□□□□ 0.6
PCDH8-201ENST00000338862 HFM1A2PYH4 1435 aa18.77■□□□□ 0.6
PCDH8-201ENST00000338862 CDCA7LQ96GN5 454 aa18.76■□□□□ 0.59
PCDH8-201ENST00000338862 BIVM-ERCC5R4GMW8 1640 aa18.76■□□□□ 0.59
PCDH8-201ENST00000338862 ANO8Q9HCE9 1232 aaPredicted RBP18.75■□□□□ 0.59
PCDH8-201ENST00000338862 TSPY4P0CV99 314 aa18.75■□□□□ 0.59
PCDH8-201ENST00000338862 TSPY10P0CW01 314 aa18.75■□□□□ 0.59
PCDH8-201ENST00000338862 NESP48681 1621 aa18.73■□□□□ 0.59
PCDH8-201ENST00000338862 PDE4AP27815 886 aa18.72■□□□□ 0.59
PCDH8-201ENST00000338862 CANXP27824 592 aaKnown RBP18.72■□□□□ 0.59
PCDH8-201ENST00000338862 USP47Q96K76 1375 aa18.71■□□□□ 0.59
PCDH8-201ENST00000338862 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
PCDH8-201ENST00000338862 FYCO1Q9BQS8 1478 aa18.69■□□□□ 0.58
PCDH8-201ENST00000338862 RRP1P56182 461 aaKnown RBP18.67■□□□□ 0.58
PCDH8-201ENST00000338862 NUP155O75694 1391 aa18.66■□□□□ 0.58
PCDH8-201ENST00000338862 WDR43Q15061 677 aaKnown RBP eCLIP18.66■□□□□ 0.58
PCDH8-201ENST00000338862 NEUROD2Q15784 382 aa18.66■□□□□ 0.58
PCDH8-201ENST00000338862 CHMP7Q8WUX9 453 aaPredicted RBP18.66■□□□□ 0.58
PCDH8-201ENST00000338862 PNISRQ8TF01 805 aaKnown RBP18.64■□□□□ 0.57
PCDH8-201ENST00000338862 CRBNQ96SW2 442 aa18.64■□□□□ 0.57
PCDH8-201ENST00000338862 HNRNPMP52272 730 aaKnown RBP eCLIP18.62■□□□□ 0.57
PCDH8-201ENST00000338862 POLA1P09884 1462 aaPredicted RBP18.6■□□□□ 0.57
PCDH8-201ENST00000338862 PLEKHD1A6NEE1 506 aa18.6■□□□□ 0.57
PCDH8-201ENST00000338862 TNNT2P45379 298 aaPredicted RBP18.6■□□□□ 0.57
PCDH8-201ENST00000338862 PDS5BQ9NTI5 1447 aa18.6■□□□□ 0.57
PCDH8-201ENST00000338862 PTPN23Q9H3S7 1636 aa18.59■□□□□ 0.57
PCDH8-201ENST00000338862 TCERG1O14776 1098 aaKnown RBP18.59■□□□□ 0.57
PCDH8-201ENST00000338862 CCDC146Q8IYE0 955 aa18.59■□□□□ 0.57
PCDH8-201ENST00000338862 ROCK2O75116 1388 aaKnown RBP18.58■□□□□ 0.56
PCDH8-201ENST00000338862 SPRYD3Q8NCJ5 442 aa18.57■□□□□ 0.56
PCDH8-201ENST00000338862 MAP3K1Q13233 1512 aa18.57■□□□□ 0.56
PCDH8-201ENST00000338862 PRKCSHP14314 528 aaPredicted RBP18.56■□□□□ 0.56
PCDH8-201ENST00000338862 CDK13Q14004 1512 aaKnown RBP18.56■□□□□ 0.56
PCDH8-201ENST00000338862 PPM1GO15355 546 aaPredicted RBP18.56■□□□□ 0.56
PCDH8-201ENST00000338862 NCOA1Q15788 1441 aa18.55■□□□□ 0.56
PCDH8-201ENST00000338862 NBPF1Q3BBV0 1214 aa18.55■□□□□ 0.56
PCDH8-201ENST00000338862 BRPF3Q9ULD4 1205 aa18.55■□□□□ 0.56
PCDH8-201ENST00000338862 MYBBP1AQ9BQG0 1328 aaKnown RBP18.55■□□□□ 0.56
PCDH8-201ENST00000338862 GAPVD1Q14C86 1478 aa18.55■□□□□ 0.56
PCDH8-201ENST00000338862 PANK3Q9H999 370 aa18.54■□□□□ 0.56
PCDH8-201ENST00000338862 FRAT1Q92837 279 aaPredicted RBP18.54■□□□□ 0.56
PCDH8-201ENST00000338862 NLRP13Q86W25 1043 aa18.54■□□□□ 0.56
PCDH8-201ENST00000338862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.53■□□□□ 0.56
PCDH8-201ENST00000338862 KNSTRNQ9Y448 316 aa18.53■□□□□ 0.56
PCDH8-201ENST00000338862 CHGAP10645 457 aaKnown RBP18.52■□□□□ 0.56
PCDH8-201ENST00000338862 KTN1Q86UP2 1357 aaKnown RBP18.52■□□□□ 0.56
PCDH8-201ENST00000338862 ANKRD30BQ9BXX2 1392 aa18.52■□□□□ 0.55
PCDH8-201ENST00000338862 RALBP1Q15311 655 aa18.51■□□□□ 0.55
PCDH8-201ENST00000338862 SLKQ9H2G2 1235 aaPredicted RBP18.51■□□□□ 0.55
PCDH8-201ENST00000338862 HMGXB3Q12766 1538 aa18.51■□□□□ 0.55
PCDH8-201ENST00000338862 C20orf194Q5TEA3 1177 aa18.51■□□□□ 0.55
PCDH8-201ENST00000338862 SMG6Q86US8 1419 aaKnown RBP18.51■□□□□ 0.55
PCDH8-201ENST00000338862 TOPBP1Q92547 1522 aa18.5■□□□□ 0.55
PCDH8-201ENST00000338862 DDRGK1Q96HY6 314 aa18.5■□□□□ 0.55
PCDH8-201ENST00000338862 KIF15Q9NS87 1388 aa18.5■□□□□ 0.55
PCDH8-201ENST00000338862 BACH2Q9BYV9 841 aa18.46■□□□□ 0.55
PCDH8-201ENST00000338862 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.45■□□□□ 0.54
PCDH8-201ENST00000338862 ADAMTS8Q9UP79 889 aa18.44■□□□□ 0.54
PCDH8-201ENST00000338862 EFCAB5A4FU69 1503 aa18.43■□□□□ 0.54
PCDH8-201ENST00000338862 ANKRD30AQ9BXX3 1397 aa18.43■□□□□ 0.54
PCDH8-201ENST00000338862 NFKBIBQ15653 356 aa18.43■□□□□ 0.54
PCDH8-201ENST00000338862 TMF1P82094 1093 aa18.42■□□□□ 0.54
PCDH8-201ENST00000338862 PRG4Q92954 1404 aaPredicted RBP18.41■□□□□ 0.54
PCDH8-201ENST00000338862 BCL2L13Q9BXK5 485 aa18.4■□□□□ 0.54
PCDH8-201ENST00000338862 CLUAP1Q96AJ1 413 aa18.4■□□□□ 0.54
PCDH8-201ENST00000338862 GSE1Q14687 1217 aa18.39■□□□□ 0.54
PCDH8-201ENST00000338862 GZF1Q9H116 711 aaPredicted RBP18.39■□□□□ 0.54
PCDH8-201ENST00000338862 DAPK1P53355 1430 aa18.39■□□□□ 0.54
PCDH8-201ENST00000338862 SUPT6HQ7KZ85 1726 aaKnown RBP18.39■□□□□ 0.53
PCDH8-201ENST00000338862 RRP7AQ9Y3A4 280 aaKnown RBP18.39■□□□□ 0.53
PCDH8-201ENST00000338862 SNAPC4Q5SXM2 1469 aa18.38■□□□□ 0.53
PCDH8-201ENST00000338862 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
PCDH8-201ENST00000338862 FRAT2O75474 233 aaPredicted RBP18.38■□□□□ 0.53
PCDH8-201ENST00000338862 KDM6BO15054 1643 aa18.38■□□□□ 0.53
PCDH8-201ENST00000338862 EHBP1L1Q8N3D4 1523 aa18.38■□□□□ 0.53
PCDH8-201ENST00000338862 EPRSP07814 1512 aaKnown RBP18.37■□□□□ 0.53
PCDH8-201ENST00000338862 ABCC5O15440 1437 aa18.37■□□□□ 0.53
PCDH8-201ENST00000338862 CFAP43Q8NDM7 1665 aa18.37■□□□□ 0.53
PCDH8-201ENST00000338862 RPRD2Q5VT52 1461 aaKnown RBP18.36■□□□□ 0.53
PCDH8-201ENST00000338862 APAF1O14727 1248 aa18.36■□□□□ 0.53
PCDH8-201ENST00000338862 PRDM2Q13029 1718 aa18.36■□□□□ 0.53
PCDH8-201ENST00000338862 DHX29Q7Z478 1369 aaKnown RBP18.35■□□□□ 0.53
PCDH8-201ENST00000338862 GOLGA2Q08379 1002 aa18.35■□□□□ 0.53
PCDH8-201ENST00000338862 PDE3BQ13370 1112 aa18.34■□□□□ 0.53
PCDH8-201ENST00000338862 ANKRD50Q9ULJ7 1429 aa18.34■□□□□ 0.53
PCDH8-201ENST00000338862 COG6Q9Y2V7 657 aa18.33■□□□□ 0.52
PCDH8-201ENST00000338862 UPF2Q9HAU5 1272 aaKnown RBP18.32■□□□□ 0.52
PCDH8-201ENST00000338862 BCAR3O75815 825 aa18.32■□□□□ 0.52
PCDH8-201ENST00000338862 JPH4Q96JJ6 628 aa18.32■□□□□ 0.52
PCDH8-201ENST00000338862 GRIN2BQ13224 1484 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms