RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 GRIN2BQ13224 1484 aa14.25□□□□□ -0.13
COL3A1-202ENST00000317840 NPM1P06748 294 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL3A1-202ENST00000317840 HNRNPMP52272 730 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL3A1-202ENST00000317840 PTPN23Q9H3S7 1636 aa14.24□□□□□ -0.13
COL3A1-202ENST00000317840 CARMIL2Q6F5E8 1435 aa14.23□□□□□ -0.13
COL3A1-202ENST00000317840 NBPF8Q3BBV2 869 aa14.23□□□□□ -0.13
COL3A1-202ENST00000317840 CCDC7Q96M83 1385 aa14.23□□□□□ -0.13
COL3A1-202ENST00000317840 SNAPC4Q5SXM2 1469 aa14.22□□□□□ -0.13
COL3A1-202ENST00000317840 CNTLNQ9NXG0 1405 aa14.21□□□□□ -0.13
COL3A1-202ENST00000317840 NBR1Q14596 966 aa14.21□□□□□ -0.13
COL3A1-202ENST00000317840 MSH5O43196 834 aa14.21□□□□□ -0.14
COL3A1-202ENST00000317840 KIF7Q2M1P5 1343 aa14.2□□□□□ -0.14
COL3A1-202ENST00000317840 ERICH6BQ5W0A0 696 aa14.2□□□□□ -0.14
COL3A1-202ENST00000317840 CHGAP10645 457 aaKnown RBP14.19□□□□□ -0.14
COL3A1-202ENST00000317840 PKD2Q13563 968 aa14.19□□□□□ -0.14
COL3A1-202ENST00000317840 ZBED9Q6R2W3 1325 aa14.19□□□□□ -0.14
COL3A1-202ENST00000317840 EHBP1L1Q8N3D4 1523 aa14.19□□□□□ -0.14
COL3A1-202ENST00000317840 CUL7Q14999 1698 aa14.18□□□□□ -0.14
COL3A1-202ENST00000317840 SUPT6HQ7KZ85 1726 aaKnown RBP14.18□□□□□ -0.14
COL3A1-202ENST00000317840 CARD11Q9BXL7 1154 aa14.17□□□□□ -0.14
COL3A1-202ENST00000317840 ANP32AP39687 249 aaKnown RBP14.17□□□□□ -0.14
COL3A1-202ENST00000317840 IFT140Q96RY7 1462 aa14.17□□□□□ -0.14
COL3A1-202ENST00000317840 FANCIQ9NVI1 1328 aa14.17□□□□□ -0.14
COL3A1-202ENST00000317840 NPM2Q86SE8 214 aaKnown RBP14.16□□□□□ -0.14
COL3A1-202ENST00000317840 PRDM2Q13029 1718 aa14.16□□□□□ -0.14
COL3A1-202ENST00000317840 CDK13Q14004 1512 aaKnown RBP14.15□□□□□ -0.15
COL3A1-202ENST00000317840 PTPRGP23470 1445 aa14.14□□□□□ -0.15
COL3A1-202ENST00000317840 RTL5Q5HYW3 569 aaPredicted RBP14.14□□□□□ -0.15
COL3A1-202ENST00000317840 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
COL3A1-202ENST00000317840 CTTNBP2Q8WZ74 1663 aa14.12□□□□□ -0.15
COL3A1-202ENST00000317840 EPRSP07814 1512 aaKnown RBP14.12□□□□□ -0.15
COL3A1-202ENST00000317840 DCAF11Q8TEB1 546 aa14.11□□□□□ -0.15
COL3A1-202ENST00000317840 NUDCQ9Y266 331 aa14.11□□□□□ -0.15
COL3A1-202ENST00000317840 PLPPR3Q6T4P5 718 aa14.1□□□□□ -0.15
COL3A1-202ENST00000317840 PRG4Q92954 1404 aaPredicted RBP14.1□□□□□ -0.15
COL3A1-202ENST00000317840 USP47Q96K76 1375 aa14.1□□□□□ -0.15
COL3A1-202ENST00000317840 MIA2Q96PC5 1412 aa14.1□□□□□ -0.15
COL3A1-202ENST00000317840 NOP58Q9Y2X3 529 aaKnown RBP14.1□□□□□ -0.15
COL3A1-202ENST00000317840 UGGT2Q9NYU1 1516 aa14.09□□□□□ -0.15
COL3A1-202ENST00000317840 ANKRD30BQ9BXX2 1392 aa14.09□□□□□ -0.15
COL3A1-202ENST00000317840 NCOA1Q15788 1441 aa14.08□□□□□ -0.15
COL3A1-202ENST00000317840 ZBTB47Q9UFB7 747 aaPredicted RBP14.08□□□□□ -0.16
COL3A1-202ENST00000317840 NUP155O75694 1391 aa14.07□□□□□ -0.16
COL3A1-202ENST00000317840 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
COL3A1-202ENST00000317840 DAPK1P53355 1430 aa14.06□□□□□ -0.16
COL3A1-202ENST00000317840 ST20-MTHFSA0A0A6YYL1 179 aa14.06□□□□□ -0.16
COL3A1-202ENST00000317840 MAGI3Q5TCQ9 1506 aa14.05□□□□□ -0.16
COL3A1-202ENST00000317840 HECW1Q76N89 1606 aa14.05□□□□□ -0.16
COL3A1-202ENST00000317840 PLB1Q6P1J6 1458 aa14.05□□□□□ -0.16
COL3A1-202ENST00000317840 ABCC5O15440 1437 aa14.03□□□□□ -0.16
COL3A1-202ENST00000317840 ANKRD30AQ9BXX3 1397 aa14.03□□□□□ -0.16
COL3A1-202ENST00000317840 RPRD2Q5VT52 1461 aaKnown RBP14.03□□□□□ -0.16
COL3A1-202ENST00000317840 DEKP35659 375 aaKnown RBP14.03□□□□□ -0.16
COL3A1-202ENST00000317840 KIAA0586Q9BVV6 1533 aa14.03□□□□□ -0.16
COL3A1-202ENST00000317840 IQGAP2Q13576 1575 aa14.03□□□□□ -0.16
COL3A1-202ENST00000317840 GRIN2AQ12879 1464 aa14.02□□□□□ -0.17
COL3A1-202ENST00000317840 THOC2Q8NI27 1593 aaKnown RBP14.02□□□□□ -0.17
COL3A1-202ENST00000317840 SAMD9Q5K651 1589 aa14.02□□□□□ -0.17
COL3A1-202ENST00000317840 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
COL3A1-202ENST00000317840 KDM6BO15054 1643 aa14□□□□□ -0.17
COL3A1-202ENST00000317840 TCOF1Q13428 1488 aaKnown RBP14□□□□□ -0.17
COL3A1-202ENST00000317840 ROCK1Q13464 1354 aa14□□□□□ -0.17
COL3A1-202ENST00000317840 EFCAB2Q5VUJ9 269 aa13.99□□□□□ -0.17
COL3A1-202ENST00000317840 PNISRQ8TF01 805 aaKnown RBP13.98□□□□□ -0.17
COL3A1-202ENST00000317840 KDM5BQ9UGL1 1544 aa13.98□□□□□ -0.17
COL3A1-202ENST00000317840 PAK3O75914 559 aaPredicted RBP13.98□□□□□ -0.17
COL3A1-202ENST00000317840 DAXXQ9UER7 740 aaPredicted RBP13.98□□□□□ -0.17
COL3A1-202ENST00000317840 DENND4BO75064 1496 aaPredicted RBP13.97□□□□□ -0.17
COL3A1-202ENST00000317840 CYB5RLQ6IPT4 315 aa13.97□□□□□ -0.17
COL3A1-202ENST00000317840 RCAN3Q9UKA8 241 aa13.97□□□□□ -0.17
COL3A1-202ENST00000317840 ROCK2O75116 1388 aaKnown RBP13.97□□□□□ -0.17
COL3A1-202ENST00000317840 GGT6Q6P531 493 aa13.96□□□□□ -0.17
COL3A1-202ENST00000317840 ANKRD50Q9ULJ7 1429 aa13.96□□□□□ -0.17
COL3A1-202ENST00000317840 SYNJ2O15056 1496 aa13.96□□□□□ -0.18
COL3A1-202ENST00000317840 KIF15Q9NS87 1388 aa13.96□□□□□ -0.18
COL3A1-202ENST00000317840 RALBP1Q15311 655 aa13.95□□□□□ -0.18
COL3A1-202ENST00000317840 EXOC6Q8TAG9 804 aa13.95□□□□□ -0.18
COL3A1-202ENST00000317840 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
COL3A1-202ENST00000317840 KIAA1107Q9UPP5 1409 aa13.95□□□□□ -0.18
COL3A1-202ENST00000317840 IPO9Q96P70 1041 aaKnown RBP13.95□□□□□ -0.18
COL3A1-202ENST00000317840 SMG6Q86US8 1419 aaKnown RBP13.95□□□□□ -0.18
COL3A1-202ENST00000317840 OSCARQ8IYS5 282 aa13.94□□□□□ -0.18
COL3A1-202ENST00000317840 MYBBP1AQ9BQG0 1328 aaKnown RBP13.94□□□□□ -0.18
COL3A1-202ENST00000317840 AFAP1Q8N556 730 aa13.94□□□□□ -0.18
COL3A1-202ENST00000317840 LAS1LQ9Y4W2 734 aaKnown RBP13.93□□□□□ -0.18
COL3A1-202ENST00000317840 KIF3BO15066 747 aa13.93□□□□□ -0.18
COL3A1-202ENST00000317840 NLRP13Q86W25 1043 aa13.92□□□□□ -0.18
COL3A1-202ENST00000317840 TEX14Q8IWB6 1497 aa13.92□□□□□ -0.18
COL3A1-202ENST00000317840 TROQ12816 1431 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-202ENST00000317840 KTN1Q86UP2 1357 aaKnown RBP13.92□□□□□ -0.18
COL3A1-202ENST00000317840 RRP1P56182 461 aaKnown RBP13.91□□□□□ -0.18
COL3A1-202ENST00000317840 ARHGEF11O15085 1522 aa13.91□□□□□ -0.18
COL3A1-202ENST00000317840 LRRIQ1Q96JM4 1722 aa13.91□□□□□ -0.18
COL3A1-202ENST00000317840 PLIN1O60240 522 aa13.91□□□□□ -0.18
COL3A1-202ENST00000317840 STAG3Q9UJ98 1225 aa13.9□□□□□ -0.18
COL3A1-202ENST00000317840 ARID4BQ4LE39 1312 aaPredicted RBP13.9□□□□□ -0.18
COL3A1-202ENST00000317840 SPATA31E1Q6ZUB1 1445 aa13.9□□□□□ -0.18
COL3A1-202ENST00000317840 MLECQ14165 292 aa13.9□□□□□ -0.18
COL3A1-202ENST00000317840 SPAG9O60271 1321 aaKnown RBP13.9□□□□□ -0.18
COL3A1-202ENST00000317840 GCC2Q8IWJ2 1684 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms