RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 NISCHQ9Y2I1 1504 aa20.4■□□□□ 0.86
COL3A1-202ENST00000317840 DCAF8L2P0C7V8 631 aa18.74■□□□□ 0.59
COL3A1-202ENST00000317840 SHROOM4Q9ULL8 1493 aa18.27■□□□□ 0.51
COL3A1-202ENST00000317840 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
COL3A1-202ENST00000317840 CHIC1Q5VXU3 224 aa17.31■□□□□ 0.36
COL3A1-202ENST00000317840 PCGF6Q9BYE7 350 aa17.31■□□□□ 0.36
COL3A1-202ENST00000317840 ZCCHC6Q5VYS8 1495 aaKnown RBP17.2■□□□□ 0.34
COL3A1-202ENST00000317840 HRCP23327 699 aa17.16■□□□□ 0.34
COL3A1-202ENST00000317840 ABCC9O60706 1549 aa17.09■□□□□ 0.33
COL3A1-202ENST00000317840 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
COL3A1-202ENST00000317840 MYO15BQ96JP2 1530 aa17.04■□□□□ 0.32
COL3A1-202ENST00000317840 LOC105371045A0A1W2PR82 267 aa17.02■□□□□ 0.31
COL3A1-202ENST00000317840 PPARGC1BQ86YN6 1023 aaKnown RBP16.95■□□□□ 0.3
COL3A1-202ENST00000317840 CCDC180Q9P1Z9 1646 aa16.93■□□□□ 0.3
COL3A1-202ENST00000317840 FAM9AQ8IZU1 332 aaPredicted RBP16.83■□□□□ 0.28
COL3A1-202ENST00000317840 TRIM41Q8WV44 630 aa16.73■□□□□ 0.27
COL3A1-202ENST00000317840 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.27
COL3A1-202ENST00000317840 PABPN1Q86U42 306 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL3A1-202ENST00000317840 DCAF1Q9Y4B6 1507 aa16.58■□□□□ 0.24
COL3A1-202ENST00000317840 SCRIBQ14160 1630 aa16.54■□□□□ 0.24
COL3A1-202ENST00000317840 ZEB1P37275 1124 aaPredicted RBP16.47■□□□□ 0.23
COL3A1-202ENST00000317840 TTBK1Q5TCY1 1321 aaPredicted RBP16.36■□□□□ 0.21
COL3A1-202ENST00000317840 RSF1Q96T23 1441 aaPredicted RBP16.34■□□□□ 0.21
COL3A1-202ENST00000317840 RANGAP1P46060 587 aaPredicted RBP16.27■□□□□ 0.19
COL3A1-202ENST00000317840 CCER1Q8TC90 406 aaPredicted RBP16.25■□□□□ 0.19
COL3A1-202ENST00000317840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.19■□□□□ 0.18
COL3A1-202ENST00000317840 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
COL3A1-202ENST00000317840 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
COL3A1-202ENST00000317840 UBTFP17480 764 aaKnown RBP16.08■□□□□ 0.16
COL3A1-202ENST00000317840 NACADO15069 1562 aa16.06■□□□□ 0.16
COL3A1-202ENST00000317840 SCAF1Q9H7N4 1312 aaKnown RBP15.95■□□□□ 0.14
COL3A1-202ENST00000317840 PELP1Q8IZL8 1130 aaKnown RBP15.94■□□□□ 0.14
COL3A1-202ENST00000317840 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
COL3A1-202ENST00000317840 DIEXFQ68CQ4 756 aaKnown RBP15.9■□□□□ 0.14
COL3A1-202ENST00000317840 CENPBP07199 599 aaPredicted RBP15.9■□□□□ 0.14
COL3A1-202ENST00000317840 APLP2Q06481 763 aa15.84■□□□□ 0.13
COL3A1-202ENST00000317840 YTHDC1Q96MU7 727 aaKnown RBP15.83■□□□□ 0.12
COL3A1-202ENST00000317840 WIZO95785 1651 aa15.81■□□□□ 0.12
COL3A1-202ENST00000317840 HNRNPUL2Q1KMD3 747 aaKnown RBP15.81■□□□□ 0.12
COL3A1-202ENST00000317840 ACIN1Q9UKV3 1341 aaKnown RBP15.79■□□□□ 0.12
COL3A1-202ENST00000317840 CSRNP3Q8WYN3 585 aa15.78■□□□□ 0.12
COL3A1-202ENST00000317840 NEUROD1Q13562 356 aa15.77■□□□□ 0.12
COL3A1-202ENST00000317840 GTF3C3Q9Y5Q9 886 aa15.75■□□□□ 0.11
COL3A1-202ENST00000317840 ATP1B4Q9UN42 357 aaPredicted RBP15.74■□□□□ 0.11
COL3A1-202ENST00000317840 CEP162Q5TB80 1403 aa15.71■□□□□ 0.1
COL3A1-202ENST00000317840 ABCC8Q09428 1581 aa15.69■□□□□ 0.1
COL3A1-202ENST00000317840 CCDC88BA6NC98 1476 aa15.69■□□□□ 0.1
COL3A1-202ENST00000317840 BAZ1AQ9NRL2 1556 aaPredicted RBP15.68■□□□□ 0.1
COL3A1-202ENST00000317840 SOGA1O94964 1423 aa15.67■□□□□ 0.1
COL3A1-202ENST00000317840 ZNF316A6NFI3 1004 aaPredicted RBP15.65■□□□□ 0.1
COL3A1-202ENST00000317840 TNIKQ9UKE5 1360 aa15.59■□□□□ 0.09
COL3A1-202ENST00000317840 RUSC2Q8N2Y8 1516 aa15.52■□□□□ 0.08
COL3A1-202ENST00000317840 TOP2AP11388 1531 aaKnown RBP15.51■□□□□ 0.07
COL3A1-202ENST00000317840 BAZ1BQ9UIG0 1483 aaKnown RBP15.51■□□□□ 0.07
COL3A1-202ENST00000317840 EEA1Q15075 1411 aa15.5■□□□□ 0.07
COL3A1-202ENST00000317840 WRNQ14191 1432 aaPredicted RBP eCLIP15.49■□□□□ 0.07
COL3A1-202ENST00000317840 ITGAEP38570 1179 aa15.49■□□□□ 0.07
COL3A1-202ENST00000317840 GOLGA3Q08378 1498 aa15.49■□□□□ 0.07
COL3A1-202ENST00000317840 MIER1Q8N108 512 aa15.47■□□□□ 0.07
COL3A1-202ENST00000317840 CLIP1P30622 1438 aa15.45■□□□□ 0.06
COL3A1-202ENST00000317840 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
COL3A1-202ENST00000317840 SMARCA2P51531 1590 aa15.42■□□□□ 0.06
COL3A1-202ENST00000317840 P3H3Q8IVL6 736 aa15.42■□□□□ 0.06
COL3A1-202ENST00000317840 CEP164Q9UPV0 1460 aa15.36■□□□□ 0.05
COL3A1-202ENST00000317840 ATAD2BQ9ULI0 1458 aa15.33■□□□□ 0.04
COL3A1-202ENST00000317840 EIF4G1Q04637 1599 aaKnown RBP15.31■□□□□ 0.04
COL3A1-202ENST00000317840 VPS8Q8N3P4 1428 aa15.27■□□□□ 0.03
COL3A1-202ENST00000317840 BICRAQ9NZM4 1560 aa15.25■□□□□ 0.03
COL3A1-202ENST00000317840 ARID3CA6NKF2 412 aa15.24■□□□□ 0.03
COL3A1-202ENST00000317840 RAPGEF2Q9Y4G8 1499 aa15.23■□□□□ 0.03
COL3A1-202ENST00000317840 FBLN2P98095 1184 aa15.21■□□□□ 0.03
COL3A1-202ENST00000317840 MYT1Q01538 1121 aa15.19■□□□□ 0.02
COL3A1-202ENST00000317840 KANK4Q5T7N3 995 aaPredicted RBP15.18■□□□□ 0.02
COL3A1-202ENST00000317840 UNC13AQ9UPW8 1703 aa15.18■□□□□ 0.02
COL3A1-202ENST00000317840 SYNJ1O43426 1573 aa15.15■□□□□ 0.02
COL3A1-202ENST00000317840 FAM50AQ14320 339 aaKnown RBP15.15■□□□□ 0.02
COL3A1-202ENST00000317840 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
COL3A1-202ENST00000317840 CLSPNQ9HAW4 1339 aa15.06■□□□□ 0
COL3A1-202ENST00000317840 KIF21BO75037 1637 aa15.06■□□□□ 0
COL3A1-202ENST00000317840 BCANQ96GW7 911 aa15.06■□□□□ 0
COL3A1-202ENST00000317840 DHX57Q6P158 1386 aaKnown RBP15.06■□□□□ 0
COL3A1-202ENST00000317840 KIF27Q86VH2 1401 aa15.03■□□□□ -0
COL3A1-202ENST00000317840 DDX10Q13206 875 aaKnown RBP15.01□□□□□ -0.01
COL3A1-202ENST00000317840 CCNB3Q8WWL7 1395 aa15□□□□□ -0.01
COL3A1-202ENST00000317840 CUX2O14529 1486 aa15□□□□□ -0.01
COL3A1-202ENST00000317840 CADPSQ9ULU8 1353 aa15□□□□□ -0.01
COL3A1-202ENST00000317840 SUPT16HQ9Y5B9 1047 aaKnown RBP14.99□□□□□ -0.01
COL3A1-202ENST00000317840 NEFLP07196 543 aa14.98□□□□□ -0.01
COL3A1-202ENST00000317840 HIRIP3Q9BW71 556 aaPredicted RBP14.98□□□□□ -0.01
COL3A1-202ENST00000317840 NCAPD3P42695 1498 aa14.97□□□□□ -0.01
COL3A1-202ENST00000317840 SIN3AQ96ST3 1273 aa14.95□□□□□ -0.02
COL3A1-202ENST00000317840 TDRD9Q8NDG6 1382 aaKnown RBP14.94□□□□□ -0.02
COL3A1-202ENST00000317840 ARAP1Q96P48 1450 aa14.92□□□□□ -0.02
COL3A1-202ENST00000317840 KCNH8Q96L42 1107 aa14.92□□□□□ -0.02
COL3A1-202ENST00000317840 CARMIL1Q5VZK9 1371 aa14.91□□□□□ -0.02
COL3A1-202ENST00000317840 PEG3Q9GZU2 1588 aa14.91□□□□□ -0.02
COL3A1-202ENST00000317840 RAB3GAP2Q9H2M9 1393 aa14.9□□□□□ -0.02
COL3A1-202ENST00000317840 FKBP8Q14318 412 aa14.9□□□□□ -0.02
COL3A1-202ENST00000317840 PRXQ9BXM0 1461 aa14.89□□□□□ -0.03
COL3A1-202ENST00000317840 NESP48681 1621 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms