RNA–Protein interactions for RNA: ENST00000299866.12

TVP23A-201, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TVP23A, Length 3,360 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-201ENST00000299866 EFCAB5A4FU69 1503 aa17.42■□□□□ 0.38
TVP23A-201ENST00000299866 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
TVP23A-201ENST00000299866 SNAPC4Q5SXM2 1469 aa17.4■□□□□ 0.38
TVP23A-201ENST00000299866 ARID3CA6NKF2 412 aa17.39■□□□□ 0.37
TVP23A-201ENST00000299866 USP35Q9P2H5 1018 aa17.39■□□□□ 0.37
TVP23A-201ENST00000299866 BRPF3Q9ULD4 1205 aa17.39■□□□□ 0.37
TVP23A-201ENST00000299866 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
TVP23A-201ENST00000299866 PNISRQ8TF01 805 aaKnown RBP17.39■□□□□ 0.37
TVP23A-201ENST00000299866 KDM6BO15054 1643 aa17.38■□□□□ 0.37
TVP23A-201ENST00000299866 PPM1GO15355 546 aaPredicted RBP17.38■□□□□ 0.37
TVP23A-201ENST00000299866 RRP1P56182 461 aaKnown RBP17.38■□□□□ 0.37
TVP23A-201ENST00000299866 DHX29Q7Z478 1369 aaKnown RBP17.37■□□□□ 0.37
TVP23A-201ENST00000299866 BACH2Q9BYV9 841 aa17.37■□□□□ 0.37
TVP23A-201ENST00000299866 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
TVP23A-201ENST00000299866 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
TVP23A-201ENST00000299866 SPATA31E1Q6ZUB1 1445 aa17.35■□□□□ 0.37
TVP23A-201ENST00000299866 SKAP1Q86WV1 359 aa17.35■□□□□ 0.37
TVP23A-201ENST00000299866 WASHC2CQ9Y4E1 1318 aa17.34■□□□□ 0.37
TVP23A-201ENST00000299866 EIF5BO60841 1220 aaKnown RBP17.34■□□□□ 0.37
TVP23A-201ENST00000299866 RCAN3Q9UKA8 241 aa17.33■□□□□ 0.37
TVP23A-201ENST00000299866 ANKRD30BQ9BXX2 1392 aa17.33■□□□□ 0.36
TVP23A-201ENST00000299866 HECW1Q76N89 1606 aa17.33■□□□□ 0.36
TVP23A-201ENST00000299866 SLC4A3P48751 1232 aa17.32■□□□□ 0.36
TVP23A-201ENST00000299866 SUPT6HQ7KZ85 1726 aaKnown RBP17.31■□□□□ 0.36
TVP23A-201ENST00000299866 RPRD2Q5VT52 1461 aaKnown RBP17.3■□□□□ 0.36
TVP23A-201ENST00000299866 GSE1Q14687 1217 aa17.3■□□□□ 0.36
TVP23A-201ENST00000299866 USP47Q96K76 1375 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 MS4A1P11836 297 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 TEX14Q8IWB6 1497 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 EHBP1L1Q8N3D4 1523 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 UGGT2Q9NYU1 1516 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 PLIN1O60240 522 aa17.28■□□□□ 0.36
TVP23A-201ENST00000299866 GRIN2BQ13224 1484 aa17.27■□□□□ 0.36
TVP23A-201ENST00000299866 NFKBIBQ15653 356 aa17.26■□□□□ 0.35
TVP23A-201ENST00000299866 LRRIQ1Q96JM4 1722 aa17.26■□□□□ 0.35
TVP23A-201ENST00000299866 DAXXQ9UER7 740 aaPredicted RBP17.25■□□□□ 0.35
TVP23A-201ENST00000299866 MAGI3Q5TCQ9 1506 aa17.25■□□□□ 0.35
TVP23A-201ENST00000299866 FRAT1Q92837 279 aaPredicted RBP17.25■□□□□ 0.35
TVP23A-201ENST00000299866 DDRGK1Q96HY6 314 aa17.25■□□□□ 0.35
TVP23A-201ENST00000299866 GCC2Q8IWJ2 1684 aa17.25■□□□□ 0.35
TVP23A-201ENST00000299866 ABCA5Q8WWZ7 1642 aa17.23■□□□□ 0.35
TVP23A-201ENST00000299866 CDCA7LQ96GN5 454 aa17.23■□□□□ 0.35
TVP23A-201ENST00000299866 CTTNBP2Q8WZ74 1663 aa17.23■□□□□ 0.35
TVP23A-201ENST00000299866 TCOF1Q13428 1488 aaKnown RBP17.22■□□□□ 0.35
TVP23A-201ENST00000299866 MIA2Q96PC5 1412 aa17.22■□□□□ 0.35
TVP23A-201ENST00000299866 ABCA10Q8WWZ4 1543 aa17.21■□□□□ 0.35
TVP23A-201ENST00000299866 FANCD2Q9BXW9 1451 aa17.21■□□□□ 0.34
TVP23A-201ENST00000299866 PRDM2Q13029 1718 aa17.21■□□□□ 0.34
TVP23A-201ENST00000299866 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
TVP23A-201ENST00000299866 ZNF644Q9H582 1327 aaPredicted RBP17.2■□□□□ 0.34
TVP23A-201ENST00000299866 UBE2Q2Q8WVN8 375 aa17.2■□□□□ 0.34
TVP23A-201ENST00000299866 CRBNQ96SW2 442 aa17.2■□□□□ 0.34
TVP23A-201ENST00000299866 MYBBP1AQ9BQG0 1328 aaKnown RBP17.19■□□□□ 0.34
TVP23A-201ENST00000299866 TDRD9Q8NDG6 1382 aaKnown RBP17.19■□□□□ 0.34
TVP23A-201ENST00000299866 BCORL1Q5H9F3 1711 aa17.18■□□□□ 0.34
TVP23A-201ENST00000299866 KIF15Q9NS87 1388 aa17.18■□□□□ 0.34
TVP23A-201ENST00000299866 CARD11Q9BXL7 1154 aa17.18■□□□□ 0.34
TVP23A-201ENST00000299866 ARHGEF11O15085 1522 aa17.18■□□□□ 0.34
TVP23A-201ENST00000299866 LRPPRCP42704 1394 aaKnown RBP17.18■□□□□ 0.34
TVP23A-201ENST00000299866 KDM2AQ9Y2K7 1162 aa17.16■□□□□ 0.34
TVP23A-201ENST00000299866 BRD4O60885 1362 aaPredicted RBP17.16■□□□□ 0.34
TVP23A-201ENST00000299866 CUL7Q14999 1698 aa17.16■□□□□ 0.34
TVP23A-201ENST00000299866 POLR1AO95602 1720 aaPredicted RBP17.16■□□□□ 0.34
TVP23A-201ENST00000299866 CC2D2AQ9P2K1 1620 aa17.15■□□□□ 0.34
TVP23A-201ENST00000299866 ST20-MTHFSA0A0A6YYL1 179 aa17.15■□□□□ 0.34
TVP23A-201ENST00000299866 RALBP1Q15311 655 aa17.14■□□□□ 0.33
TVP23A-201ENST00000299866 SAMD9Q5K651 1589 aa17.14■□□□□ 0.33
TVP23A-201ENST00000299866 ROCK2O75116 1388 aaKnown RBP17.13■□□□□ 0.33
TVP23A-201ENST00000299866 ARID4BQ4LE39 1312 aaPredicted RBP17.13■□□□□ 0.33
TVP23A-201ENST00000299866 PKD2Q13563 968 aa17.13■□□□□ 0.33
TVP23A-201ENST00000299866 DAPK1P53355 1430 aa17.12■□□□□ 0.33
TVP23A-201ENST00000299866 TOPBP1Q92547 1522 aa17.12■□□□□ 0.33
TVP23A-201ENST00000299866 FRAT2O75474 233 aaPredicted RBP17.12■□□□□ 0.33
TVP23A-201ENST00000299866 PDE3BQ13370 1112 aa17.12■□□□□ 0.33
TVP23A-201ENST00000299866 THOC2Q8NI27 1593 aaKnown RBP17.12■□□□□ 0.33
TVP23A-201ENST00000299866 CDK13Q14004 1512 aaKnown RBP17.11■□□□□ 0.33
TVP23A-201ENST00000299866 C20orf194Q5TEA3 1177 aa17.11■□□□□ 0.33
TVP23A-201ENST00000299866 ABCC5O15440 1437 aa17.1■□□□□ 0.33
TVP23A-201ENST00000299866 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
TVP23A-201ENST00000299866 NLRP13Q86W25 1043 aa17.09■□□□□ 0.33
TVP23A-201ENST00000299866 ROCK1Q13464 1354 aa17.08■□□□□ 0.33
TVP23A-201ENST00000299866 EPRSP07814 1512 aaKnown RBP17.08■□□□□ 0.32
TVP23A-201ENST00000299866 RGS3P49796 1198 aa17.06■□□□□ 0.32
TVP23A-201ENST00000299866 ZNF777Q9ULD5 760 aaPredicted RBP17.06■□□□□ 0.32
TVP23A-201ENST00000299866 CC2D1BQ5T0F9 858 aaKnown RBP17.06■□□□□ 0.32
TVP23A-201ENST00000299866 PZPP20742 1482 aa17.05■□□□□ 0.32
TVP23A-201ENST00000299866 DCAF11Q8TEB1 546 aa17.05■□□□□ 0.32
TVP23A-201ENST00000299866 MBD5Q9P267 1494 aa17.04■□□□□ 0.32
TVP23A-201ENST00000299866 KDM5CP41229 1560 aa17.04■□□□□ 0.32
TVP23A-201ENST00000299866 KTN1Q86UP2 1357 aaKnown RBP17.04■□□□□ 0.32
TVP23A-201ENST00000299866 FAM161AQ3B820 660 aa17.04■□□□□ 0.32
TVP23A-201ENST00000299866 KIAA1107Q9UPP5 1409 aa17.03■□□□□ 0.32
TVP23A-201ENST00000299866 C8orf34Q49A92 452 aa17.02■□□□□ 0.31
TVP23A-201ENST00000299866 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
TVP23A-201ENST00000299866 RSPH6AQ9H0K4 717 aa17.01■□□□□ 0.31
TVP23A-201ENST00000299866 NESP48681 1621 aa17.01■□□□□ 0.31
TVP23A-201ENST00000299866 FAM43AQ8N2R8 423 aa17■□□□□ 0.31
TVP23A-201ENST00000299866 CENPQQ7L2Z9 268 aaPredicted RBP17■□□□□ 0.31
TVP23A-201ENST00000299866 KDM2BQ8NHM5 1336 aa16.99■□□□□ 0.31
TVP23A-201ENST00000299866 KIF14Q15058 1648 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms