RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 EXOC6Q8TAG9 804 aa13.73□□□□□ -0.21
LMX1A-201ENST00000294816 HMGXB3Q12766 1538 aa13.72□□□□□ -0.21
LMX1A-201ENST00000294816 PDE4AP27815 886 aa13.71□□□□□ -0.21
LMX1A-201ENST00000294816 SLC4A1APQ9BWU0 796 aaKnown RBP13.71□□□□□ -0.21
LMX1A-201ENST00000294816 RAD54L2Q9Y4B4 1467 aa13.71□□□□□ -0.21
LMX1A-201ENST00000294816 EFCAB5A4FU69 1503 aa13.7□□□□□ -0.22
LMX1A-201ENST00000294816 EIF5BO60841 1220 aaKnown RBP13.69□□□□□ -0.22
LMX1A-201ENST00000294816 TCERG1O14776 1098 aaKnown RBP13.69□□□□□ -0.22
LMX1A-201ENST00000294816 CADPSQ9ULU8 1353 aa13.68□□□□□ -0.22
LMX1A-201ENST00000294816 RNF123Q5XPI4 1314 aa13.68□□□□□ -0.22
LMX1A-201ENST00000294816 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
LMX1A-201ENST00000294816 RRP1P56182 461 aaKnown RBP13.67□□□□□ -0.22
LMX1A-201ENST00000294816 BRPF3Q9ULD4 1205 aa13.67□□□□□ -0.22
LMX1A-201ENST00000294816 DENND4BO75064 1496 aaPredicted RBP13.67□□□□□ -0.22
LMX1A-201ENST00000294816 DAXXQ9UER7 740 aaPredicted RBP13.66□□□□□ -0.22
LMX1A-201ENST00000294816 SKAP1Q86WV1 359 aa13.66□□□□□ -0.22
LMX1A-201ENST00000294816 SNAPC4Q5SXM2 1469 aa13.66□□□□□ -0.22
LMX1A-201ENST00000294816 PNISRQ8TF01 805 aaKnown RBP13.65□□□□□ -0.22
LMX1A-201ENST00000294816 RCAN3Q9UKA8 241 aa13.65□□□□□ -0.22
LMX1A-201ENST00000294816 SLC4A3P48751 1232 aa13.65□□□□□ -0.23
LMX1A-201ENST00000294816 KDM6BO15054 1643 aa13.64□□□□□ -0.23
LMX1A-201ENST00000294816 USP35Q9P2H5 1018 aa13.64□□□□□ -0.23
LMX1A-201ENST00000294816 BACH2Q9BYV9 841 aa13.63□□□□□ -0.23
LMX1A-201ENST00000294816 SUPT6HQ7KZ85 1726 aaKnown RBP13.63□□□□□ -0.23
LMX1A-201ENST00000294816 DHX29Q7Z478 1369 aaKnown RBP13.62□□□□□ -0.23
LMX1A-201ENST00000294816 PLIN1O60240 522 aa13.62□□□□□ -0.23
LMX1A-201ENST00000294816 USP47Q96K76 1375 aa13.62□□□□□ -0.23
LMX1A-201ENST00000294816 ANKRD30BQ9BXX2 1392 aa13.61□□□□□ -0.23
LMX1A-201ENST00000294816 HECW1Q76N89 1606 aa13.61□□□□□ -0.23
LMX1A-201ENST00000294816 EHBP1L1Q8N3D4 1523 aa13.6□□□□□ -0.23
LMX1A-201ENST00000294816 GSE1Q14687 1217 aa13.59□□□□□ -0.23
LMX1A-201ENST00000294816 DDRGK1Q96HY6 314 aa13.59□□□□□ -0.23
LMX1A-201ENST00000294816 SPATA31E1Q6ZUB1 1445 aa13.59□□□□□ -0.23
LMX1A-201ENST00000294816 RPRD2Q5VT52 1461 aaKnown RBP13.59□□□□□ -0.23
LMX1A-201ENST00000294816 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.23
LMX1A-201ENST00000294816 TDRD9Q8NDG6 1382 aaKnown RBP13.58□□□□□ -0.24
LMX1A-201ENST00000294816 FANCD2Q9BXW9 1451 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 UGGT2Q9NYU1 1516 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 GRIN2BQ13224 1484 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 MS4A1P11836 297 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 NFKBIBQ15653 356 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 CDCA7LQ96GN5 454 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 CARD11Q9BXL7 1154 aa13.57□□□□□ -0.24
LMX1A-201ENST00000294816 ZNF644Q9H582 1327 aaPredicted RBP13.56□□□□□ -0.24
LMX1A-201ENST00000294816 WASHC2CQ9Y4E1 1318 aa13.56□□□□□ -0.24
LMX1A-201ENST00000294816 TEX14Q8IWB6 1497 aa13.56□□□□□ -0.24
LMX1A-201ENST00000294816 FRAT1Q92837 279 aaPredicted RBP13.55□□□□□ -0.24
LMX1A-201ENST00000294816 CTTNBP2Q8WZ74 1663 aa13.55□□□□□ -0.24
LMX1A-201ENST00000294816 MAGI3Q5TCQ9 1506 aa13.55□□□□□ -0.24
LMX1A-201ENST00000294816 CRBNQ96SW2 442 aa13.54□□□□□ -0.24
LMX1A-201ENST00000294816 POLA1P09884 1462 aaPredicted RBP13.54□□□□□ -0.24
LMX1A-201ENST00000294816 GCC2Q8IWJ2 1684 aa13.54□□□□□ -0.24
LMX1A-201ENST00000294816 MYBBP1AQ9BQG0 1328 aaKnown RBP13.53□□□□□ -0.24
LMX1A-201ENST00000294816 ZNF777Q9ULD5 760 aaPredicted RBP13.53□□□□□ -0.24
LMX1A-201ENST00000294816 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
LMX1A-201ENST00000294816 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
LMX1A-201ENST00000294816 KIF15Q9NS87 1388 aa13.53□□□□□ -0.24
LMX1A-201ENST00000294816 MIA2Q96PC5 1412 aa13.52□□□□□ -0.24
LMX1A-201ENST00000294816 PKD2Q13563 968 aa13.52□□□□□ -0.25
LMX1A-201ENST00000294816 ST20-MTHFSA0A0A6YYL1 179 aa13.52□□□□□ -0.25
LMX1A-201ENST00000294816 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
LMX1A-201ENST00000294816 TCOF1Q13428 1488 aaKnown RBP13.51□□□□□ -0.25
LMX1A-201ENST00000294816 RALBP1Q15311 655 aa13.5□□□□□ -0.25
LMX1A-201ENST00000294816 CUL7Q14999 1698 aa13.5□□□□□ -0.25
LMX1A-201ENST00000294816 CDK13Q14004 1512 aaKnown RBP13.49□□□□□ -0.25
LMX1A-201ENST00000294816 BRD4O60885 1362 aaPredicted RBP13.49□□□□□ -0.25
LMX1A-201ENST00000294816 ABCA5Q8WWZ7 1642 aa13.49□□□□□ -0.25
LMX1A-201ENST00000294816 TOPBP1Q92547 1522 aa13.49□□□□□ -0.25
LMX1A-201ENST00000294816 ROCK2O75116 1388 aaKnown RBP13.48□□□□□ -0.25
LMX1A-201ENST00000294816 RGS3P49796 1198 aa13.48□□□□□ -0.25
LMX1A-201ENST00000294816 CC2D1BQ5T0F9 858 aaKnown RBP13.48□□□□□ -0.25
LMX1A-201ENST00000294816 BCORL1Q5H9F3 1711 aa13.48□□□□□ -0.25
LMX1A-201ENST00000294816 DAPK1P53355 1430 aa13.48□□□□□ -0.25
LMX1A-201ENST00000294816 NLRP13Q86W25 1043 aa13.47□□□□□ -0.25
LMX1A-201ENST00000294816 LRPPRCP42704 1394 aaKnown RBP13.47□□□□□ -0.25
LMX1A-201ENST00000294816 FRAT2O75474 233 aaPredicted RBP13.46□□□□□ -0.25
LMX1A-201ENST00000294816 PDE3BQ13370 1112 aa13.46□□□□□ -0.25
LMX1A-201ENST00000294816 DNMBPQ6XZF7 1577 aa13.46□□□□□ -0.25
LMX1A-201ENST00000294816 C20orf194Q5TEA3 1177 aa13.46□□□□□ -0.26
LMX1A-201ENST00000294816 SAMD9Q5K651 1589 aa13.45□□□□□ -0.26
LMX1A-201ENST00000294816 ARHGEF11O15085 1522 aa13.45□□□□□ -0.26
LMX1A-201ENST00000294816 ARID4BQ4LE39 1312 aaPredicted RBP13.45□□□□□ -0.26
LMX1A-201ENST00000294816 DCAF11Q8TEB1 546 aa13.45□□□□□ -0.26
LMX1A-201ENST00000294816 ABCC5O15440 1437 aa13.45□□□□□ -0.26
LMX1A-201ENST00000294816 EPRSP07814 1512 aaKnown RBP13.44□□□□□ -0.26
LMX1A-201ENST00000294816 UBE2Q2Q8WVN8 375 aa13.44□□□□□ -0.26
LMX1A-201ENST00000294816 THOC2Q8NI27 1593 aaKnown RBP13.44□□□□□ -0.26
LMX1A-201ENST00000294816 KTN1Q86UP2 1357 aaKnown RBP13.44□□□□□ -0.26
LMX1A-201ENST00000294816 ARXQ96QS3 562 aa13.44□□□□□ -0.26
LMX1A-201ENST00000294816 POLR1AO95602 1720 aaPredicted RBP13.43□□□□□ -0.26
LMX1A-201ENST00000294816 ROCK1Q13464 1354 aa13.42□□□□□ -0.26
LMX1A-201ENST00000294816 CFDP1Q9UEE9 299 aaPredicted RBP13.42□□□□□ -0.26
LMX1A-201ENST00000294816 NESP48681 1621 aa13.42□□□□□ -0.26
LMX1A-201ENST00000294816 GAPVD1Q14C86 1478 aa13.41□□□□□ -0.26
LMX1A-201ENST00000294816 FAM161AQ3B820 660 aa13.41□□□□□ -0.26
LMX1A-201ENST00000294816 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
LMX1A-201ENST00000294816 KIAA1107Q9UPP5 1409 aa13.4□□□□□ -0.26
LMX1A-201ENST00000294816 PZPP20742 1482 aa13.39□□□□□ -0.27
LMX1A-201ENST00000294816 RGL3Q3MIN7 710 aa13.38□□□□□ -0.27
LMX1A-201ENST00000294816 CENPQQ7L2Z9 268 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms