RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	CTK3	P46963	296 aa	Predicted RBP	4	□□□□□ -1.77
RET3	YPL010W	SET2	P46995	733 aa	Known RBP	4	□□□□□ -1.77
RET3	YPL010W	BIR1	P47134	954 aa		4	□□□□□ -1.77
RET3	YPL010W	YGL108C	P53139	140 aa		4	□□□□□ -1.77
RET3	YPL010W	SWC4	P53201	476 aa		4	□□□□□ -1.77
RET3	YPL010W	BET4	Q00618	327 aa		4	□□□□□ -1.77
RET3	YPL010W	VID22	Q05934	901 aa		4	□□□□□ -1.77
RET3	YPL010W	MCP2	Q06567	569 aa		4	□□□□□ -1.77
RET3	YPL010W	CMS1	Q07897	291 aa	Known RBP	4	□□□□□ -1.77
RET3	YPL010W	YOL024W	Q08172	172 aa		4	□□□□□ -1.77
RET3	YPL010W	VPS68	Q12016	184 aa		4	□□□□□ -1.77
RET3	YPL010W	CWC2	Q12046	339 aa	Predicted RBP	4	□□□□□ -1.77
RET3	YPL010W	USV1	Q12132	391 aa		4	□□□□□ -1.77
RET3	YPL010W	YPR089W	O13585	888 aa		3.99	□□□□□ -1.77
RET3	YPL010W	SCL1	P21243	252 aa	Known RBP	3.99	□□□□□ -1.77
RET3	YPL010W	UBA1	P22515	1024 aa	Known RBP	3.99	□□□□□ -1.77
RET3	YPL010W	TAF14	P35189	244 aa		3.99	□□□□□ -1.77
RET3	YPL010W	PIM1	P36775	1133 aa		3.99	□□□□□ -1.77
RET3	YPL010W	AIM18	P38884	321 aa		3.99	□□□□□ -1.77
RET3	YPL010W	IST3	P40565	148 aa	Predicted RBP	3.99	□□□□□ -1.77
RET3	YPL010W	TRF5	P48561	642 aa	Known RBP	3.99	□□□□□ -1.77
RET3	YPL010W	YGR111W	P53265	400 aa		3.99	□□□□□ -1.77
RET3	YPL010W	YNL040W	P53960	456 aa	Predicted RBP	3.99	□□□□□ -1.77
RET3	YPL010W	VPS9	P54787	451 aa		3.99	□□□□□ -1.77
RET3	YPL010W	ARP4	P80428	489 aa		3.99	□□□□□ -1.77
RET3	YPL010W	UGO1	Q03327	502 aa		3.99	□□□□□ -1.77
RET3	YPL010W	ENT5	Q03769	411 aa	Known RBP	3.99	□□□□□ -1.77
RET3	YPL010W	LDB18	Q07887	179 aa		3.99	□□□□□ -1.77
RET3	YPL010W	PLB3	Q08108	686 aa		3.99	□□□□□ -1.77
RET3	YPL010W	BSC6	Q08280	497 aa		3.99	□□□□□ -1.77
RET3	YPL010W	AAD15	Q08361	143 aa		3.99	□□□□□ -1.77
RET3	YPL010W	OSW1	Q08692	278 aa		3.99	□□□□□ -1.77
RET3	YPL010W	FRE7	Q12333	620 aa		3.99	□□□□□ -1.77
RET3	YPL010W	CPA1	P07258	411 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	APA1	P16550	321 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	EPT1	P22140	391 aa		3.98	□□□□□ -1.77
RET3	YPL010W	AAT2	P23542	418 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	PHO84	P25297	587 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	MSH1	P25846	959 aa		3.98	□□□□□ -1.77
RET3	YPL010W	PLC1	P32383	869 aa		3.98	□□□□□ -1.77
RET3	YPL010W	SPS19	P32573	292 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	MRS6	P32864	603 aa	Known RBP	3.98	□□□□□ -1.77
RET3	YPL010W	ALY1	P36117	915 aa		3.98	□□□□□ -1.77
RET3	YPL010W	JNM1	P36224	373 aa		3.98	□□□□□ -1.77
RET3	YPL010W	PIG2	P40187	538 aa		3.98	□□□□□ -1.77
RET3	YPL010W	CFD1	P40558	293 aa		3.98	□□□□□ -1.77
RET3	YPL010W	PMT3	P47190	753 aa		3.98	□□□□□ -1.77
RET3	YPL010W	RFX1	P48743	811 aa		3.98	□□□□□ -1.77
RET3	YPL010W	YGR151C	P53287	111 aa		3.98	□□□□□ -1.77
RET3	YPL010W	CCE1	Q03702	353 aa		3.98	□□□□□ -1.77
RET3	YPL010W	YMR160W	Q03823	816 aa		3.98	□□□□□ -1.77
RET3	YPL010W	YDR222W	Q04925	415 aa		3.98	□□□□□ -1.77
RET3	YPL010W	CIA1	Q05583	330 aa		3.98	□□□□□ -1.77
RET3	YPL010W	TRM8	Q12009	286 aa		3.98	□□□□□ -1.77
RET3	YPL010W	YDR262W	Q12331	272 aa		3.98	□□□□□ -1.77
RET3	YPL010W	AIM44	Q99299	758 aa		3.98	□□□□□ -1.77
RET3	YPL010W	IZH4	Q99393	312 aa		3.98	□□□□□ -1.77
RET3	YPL010W	UTP20	P35194	2493 aa	Known RBP	3.97	□□□□□ -1.77
RET3	YPL010W	SEM1	O94742	89 aa		3.97	□□□□□ -1.77
RET3	YPL010W	PCT1	P13259	424 aa		3.97	□□□□□ -1.77
RET3	YPL010W	CLC1	P17891	233 aa		3.97	□□□□□ -1.77
RET3	YPL010W	MEF1	P25039	761 aa		3.97	□□□□□ -1.77
RET3	YPL010W	RBK1	P25332	333 aa		3.97	□□□□□ -1.77
RET3	YPL010W	YPT7	P32939	208 aa		3.97	□□□□□ -1.77
RET3	YPL010W	SSZ1	P38788	538 aa	Known RBP	3.97	□□□□□ -1.77
RET3	YPL010W	TFG2	P41896	400 aa	Predicted RBP	3.97	□□□□□ -1.77
RET3	YPL010W	RRT5	P43607	289 aa		3.97	□□□□□ -1.77
RET3	YPL010W	BUD13	P46947	266 aa	Predicted RBP	3.97	□□□□□ -1.77
RET3	YPL010W	ASK10	P48361	1146 aa		3.97	□□□□□ -1.77
RET3	YPL010W	GLO1	P50107	326 aa		3.97	□□□□□ -1.77
RET3	YPL010W	YGR127W	P53275	312 aa		3.97	□□□□□ -1.77
RET3	YPL010W	VAC7	P53950	1165 aa		3.97	□□□□□ -1.77
RET3	YPL010W	CDC14	Q00684	551 aa		3.97	□□□□□ -1.77
RET3	YPL010W	REG1	Q00816	1014 aa		3.97	□□□□□ -1.77
RET3	YPL010W	EMI1	Q04406	187 aa		3.97	□□□□□ -1.77
RET3	YPL010W	UFO1	Q04511	668 aa		3.97	□□□□□ -1.77
RET3	YPL010W	YLR287C	Q05881	355 aa		3.97	□□□□□ -1.77
RET3	YPL010W	STP3	Q05937	343 aa		3.97	□□□□□ -1.77
RET3	YPL010W	CHS5	Q12114	671 aa	Known RBP	3.97	□□□□□ -1.77
RET3	YPL010W	LSP1	Q12230	341 aa	Known RBP	3.97	□□□□□ -1.77
RET3	YPL010W	TRA1	P38811	3744 aa		3.96	□□□□□ -1.78
RET3	YPL010W	MDM35	O60200	86 aa		3.96	□□□□□ -1.78
RET3	YPL010W	RPL43A	P0CX25	92 aa	Known RBP	3.96	□□□□□ -1.78
RET3	YPL010W	RPL43B	P0CX26	92 aa		3.96	□□□□□ -1.78
RET3	YPL010W	GLN4	P13188	809 aa	Known RBP	3.96	□□□□□ -1.78
RET3	YPL010W	DCC1	P25559	380 aa		3.96	□□□□□ -1.78
RET3	YPL010W	LDB16	P25587	256 aa		3.96	□□□□□ -1.78
RET3	YPL010W	MEI4	P29467	408 aa		3.96	□□□□□ -1.78
RET3	YPL010W	NTH1	P32356	751 aa		3.96	□□□□□ -1.78
RET3	YPL010W	PET309	P32522	965 aa	Predicted RBP	3.96	□□□□□ -1.78
RET3	YPL010W	CDC13	P32797	924 aa	Known RBP	3.96	□□□□□ -1.78
RET3	YPL010W	ARA1	P38115	344 aa		3.96	□□□□□ -1.78
RET3	YPL010W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.96	□□□□□ -1.78	not detected
RET3	YPL010W	CTP1	P38152	299 aa		3.96	□□□□□ -1.78
RET3	YPL010W	IML3	P38265	245 aa		3.96	□□□□□ -1.78
RET3	YPL010W	MTG2	P38860	518 aa		3.96	□□□□□ -1.78
RET3	YPL010W	SPC72	P39723	622 aa		3.96	□□□□□ -1.78
RET3	YPL010W	KHA1	P40309	873 aa		3.96	□□□□□ -1.78
RET3	YPL010W	SSU1	P41930	458 aa		3.96	□□□□□ -1.78
RET3	YPL010W	ALK1	P43633	760 aa	Known RBP	3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 28.6 ms