RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DNL4	YOR005C	IRC13	Q08630	104 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	AI5_ALPHA	Q9ZZX1	630 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	LPD1	P09624	499 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	MRP13	P12686	339 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	KGD1	P20967	1014 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	IDH2	P28241	369 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	BMH1	P29311	267 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	NIP100	P33420	868 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.6	□□□□□ -1.99	not detected
DNL4	YOR005C	PIM1	P36775	1133 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	SAP1	P39955	897 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	BUR6	P40096	142 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	TRS85	P46944	698 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	YJR079W	P47126	109 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	RPS7B	P48164	190 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	BUL1	P48524	976 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	SHE4	P51534	789 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	DCP2	P53550	970 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	MRPL22	P53881	309 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	MFM1	Q02783	413 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	HEL2	Q05580	639 aa	Known RBP	2.6	□□□□□ -1.99
DNL4	YOR005C	YDL086W	Q07505	273 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	DCI1	Q08558	271 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	Q0010	Q9ZZX9	128 aa		2.6	□□□□□ -1.99
DNL4	YOR005C	RSF2	P46974	1380 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	CDC8	P00572	216 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	CHO2	P05374	869 aa	Known RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	MET3	P08536	511 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	RPL3	P14126	387 aa	Known RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	PRP16	P15938	1071 aa	Predicted RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	CKI1	P20485	582 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	APN1	P22936	367 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	RAD5	P32849	1169 aa	Predicted RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	SUR1	P33300	382 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	RIB7	P33312	244 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	YBR144C	P34215	104 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	HCS1	P34243	683 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	SLM4	P38247	162 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	LNP1	P38878	278 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	AFG3	P39925	761 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	PHM8	P40025	321 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	ALG5	P40350	334 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	PKP1	P40530	394 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	FMS1	P50264	508 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	ALT2	P52892	507 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	PXR1	P53335	271 aa	Predicted RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	BUD17	P53727	317 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	2.59	□□□□□ -1.99	not detected
DNL4	YOR005C	RSM28	Q03430	361 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	YDL073W	Q07454	984 aa		2.59	□□□□□ -1.99
DNL4	YOR005C	PML1	Q07930	204 aa	Predicted RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	LEU9	Q12166	604 aa	Known RBP	2.59	□□□□□ -1.99
DNL4	YOR005C	YIL177C	P40434	1758 aa		2.59	□□□□□ -2
DNL4	YOR005C	YJL225C	P40889	1758 aa		2.59	□□□□□ -2
DNL4	YOR005C	AAC1	P04710	309 aa		2.59	□□□□□ -2
DNL4	YOR005C	YPK1	P12688	680 aa	Known RBP	2.59	□□□□□ -2
DNL4	YOR005C	PMR1	P13586	950 aa		2.59	□□□□□ -2
DNL4	YOR005C	SPO11	P23179	398 aa		2.59	□□□□□ -2
DNL4	YOR005C	PUP3	P25451	205 aa	Known RBP	2.59	□□□□□ -2
DNL4	YOR005C	RPF2	P36160	344 aa	Known RBP	2.59	□□□□□ -2
DNL4	YOR005C	UIP3	P39547	235 aa		2.59	□□□□□ -2
DNL4	YOR005C	FMP52	P40008	231 aa		2.59	□□□□□ -2
DNL4	YOR005C	SEC9	P40357	651 aa		2.59	□□□□□ -2
DNL4	YOR005C	MIC19	P43594	170 aa		2.59	□□□□□ -2
DNL4	YOR005C	STB2	P46679	850 aa		2.59	□□□□□ -2
DNL4	YOR005C	YJL163C	P46996	555 aa		2.59	□□□□□ -2
DNL4	YOR005C	YIP4	P53093	235 aa		2.59	□□□□□ -2
DNL4	YOR005C	MNP1	P53163	194 aa	Predicted RBP	2.59	□□□□□ -2
DNL4	YOR005C	PDR16	P53860	351 aa	Known RBP	2.59	□□□□□ -2
DNL4	YOR005C	ADE16	P54113	591 aa	Known RBP	2.59	□□□□□ -2
DNL4	YOR005C	TIM11	P81449	96 aa	Predicted RBP	2.59	□□□□□ -2
DNL4	YOR005C	ARG7	Q04728	441 aa		2.59	□□□□□ -2
DNL4	YOR005C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected
DNL4	YOR005C	YPL216W	Q08964	1102 aa		2.59	□□□□□ -2
DNL4	YOR005C	RKI1	Q12189	258 aa		2.59	□□□□□ -2
DNL4	YOR005C	TAF3	Q12297	353 aa		2.59	□□□□□ -2
DNL4	YOR005C	HIP1	P06775	603 aa		2.58	□□□□□ -2
DNL4	YOR005C	STE4	P18851	423 aa		2.58	□□□□□ -2
DNL4	YOR005C	RRP43	P25359	394 aa	Predicted RBP	2.58	□□□□□ -2
DNL4	YOR005C	RAD51	P25454	400 aa		2.58	□□□□□ -2
DNL4	YOR005C	MCM4	P30665	933 aa	Known RBP	2.58	□□□□□ -2
DNL4	YOR005C	PPQ1	P32945	549 aa		2.58	□□□□□ -2
DNL4	YOR005C	SNU114	P36048	1008 aa	Known RBP	2.58	□□□□□ -2
DNL4	YOR005C	YKR073C	P36153	106 aa		2.58	□□□□□ -2
DNL4	YOR005C	CTM1	P38818	585 aa		2.58	□□□□□ -2
DNL4	YOR005C	SER3	P40054	469 aa		2.58	□□□□□ -2
DNL4	YOR005C	CHS6	P40955	746 aa		2.58	□□□□□ -2
DNL4	YOR005C	FAR3	P46671	204 aa		2.58	□□□□□ -2
DNL4	YOR005C	VPS73	P53142	486 aa	Known RBP	2.58	□□□□□ -2
DNL4	YOR005C	YGR151C	P53287	111 aa		2.58	□□□□□ -2
DNL4	YOR005C	DIP5	P53388	608 aa		2.58	□□□□□ -2
DNL4	YOR005C	IPI3	P53877	555 aa		2.58	□□□□□ -2
DNL4	YOR005C	UFO1	Q04511	668 aa		2.58	□□□□□ -2
DNL4	YOR005C	YDR109C	Q04585	715 aa		2.58	□□□□□ -2
DNL4	YOR005C	SFH1	Q06168	426 aa		2.58	□□□□□ -2
DNL4	YOR005C	ABP140	Q08641	628 aa	Known RBP	2.58	□□□□□ -2
DNL4	YOR005C	FRE3	Q08905	711 aa		2.58	□□□□□ -2
DNL4	YOR005C	SLM3	Q12093	417 aa		2.58	□□□□□ -2
DNL4	YOR005C	RTC5	Q12108	567 aa	Known RBP	2.58	□□□□□ -2
DNL4	YOR005C	LCB4	Q12246	624 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 20.6 ms